Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35594 * 116.99719 * 2 1 4 4 C 1.39103 * 120.52364 * 359.97438 * 3 2 1 5 5 C 1.38387 * 118.61158 * 179.76656 * 4 3 2 6 6 C 1.39727 * 119.59985 * 0.49850 * 5 4 3 7 7 N 1.39706 * 119.47735 * 179.76630 * 6 5 4 8 8 C 1.36658 * 125.67744 * 4.75061 * 7 6 5 9 9 C 1.34801 * 108.19051 * 180.26403 * 8 7 6 10 10 C 1.40991 * 107.48968 * 359.58808 * 9 8 7 11 11 C 1.50694 * 126.26083 * 180.12910 * 10 9 8 12 12 N 1.46897 * 109.47522 * 270.33589 * 11 10 9 13 13 C 1.34807 * 107.48453 * 0.41315 * 10 9 8 14 14 N 1.31783 * 121.04661 * 359.49006 * 6 5 4 15 15 C 1.33748 * 121.49593 * 0.25003 * 14 6 5 16 16 C 1.40961 * 119.85996 * 180.02562 * 15 14 6 17 17 H 1.08002 * 120.00566 * 180.02562 * 16 15 14 18 18 C 1.40037 * 119.99844 * 0.02562 * 16 15 14 19 19 N 1.30781 * 120.00004 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47165 * 90.00396 * 20 18 16 22 22 H 1.48508 * 109.47135 * 210.00228 * 20 18 16 23 23 H 1.48499 * 109.46953 * 330.00413 * 20 18 16 24 24 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47098 * 299.99400 * 1 2 3 26 26 H 1.08998 * 109.47482 * 59.99883 * 1 2 3 27 27 H 1.08001 * 120.69078 * 0.03830 * 4 3 2 28 28 H 1.07993 * 120.19865 * 180.25879 * 5 4 3 29 29 H 1.08002 * 125.90189 * 359.97438 * 8 7 6 30 30 H 1.08002 * 126.25604 * 179.71754 * 9 8 7 31 31 H 1.08998 * 109.47321 * 30.33595 * 11 10 9 32 32 H 1.09003 * 109.47634 * 150.33473 * 11 10 9 33 33 H 1.00900 * 111.00707 * 179.97438 * 12 11 10 34 34 H 1.00902 * 110.99955 * 303.95691 * 12 11 10 35 35 H 1.08001 * 125.90836 * 179.74912 * 13 10 9 36 36 H 0.97001 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2976 2.3816 -0.0005 5 6 1.9666 3.5931 0.0044 6 6 3.3637 3.6099 -0.0007 7 7 4.0364 4.8344 -0.0007 8 6 3.4510 6.0654 0.0961 9 6 4.4233 6.9982 0.0550 10 6 5.6548 6.3217 -0.0620 11 6 7.0180 6.9592 -0.1402 12 7 7.3546 7.2247 -1.5453 13 6 5.3894 5.0005 -0.0973 14 7 4.0570 2.4892 -0.0003 15 6 3.4547 1.2950 0.0002 16 6 4.2301 0.1179 0.0013 17 1 3.7462 -0.8477 0.0012 18 6 5.6280 0.2003 0.0024 19 7 6.2141 1.3695 0.0029 20 14 6.6557 -1.3595 0.0045 21 1 6.9293 -1.7740 -1.3950 22 1 7.9400 -1.1052 0.7055 23 1 5.9149 -2.4394 0.7047 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2181 2.3479 -0.0003 28 1 1.4121 4.5198 0.0084 29 1 2.3920 6.2578 0.1849 30 1 4.2845 8.0681 0.1048 31 1 7.0131 7.8968 0.4156 32 1 7.7594 6.2858 0.2899 33 1 8.2647 7.6529 -1.6245 34 1 7.3027 6.3803 -2.0953 35 1 6.1197 4.2099 -0.1866 36 1 7.1824 1.4266 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169726537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = 54.310582 kcal Electronic energy + Delta-G solvation = -20485.067330 eV Core-core repulsion = 17356.719780 eV Total energy + Delta-G solvation = -3128.347550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75426 -38.92809 -36.81530 -34.60394 -33.77068 -31.36704 -30.73502 -28.72834 -28.16593 -26.64538 -25.81356 -23.90434 -21.95723 -21.48289 -19.49809 -18.77490 -17.77840 -16.97779 -16.77246 -15.66175 -15.15287 -14.90731 -14.87605 -14.36787 -13.90246 -13.72975 -13.57678 -12.99300 -12.76912 -12.59662 -12.22260 -12.07899 -12.00215 -11.42555 -11.31080 -11.22918 -10.98990 -10.83547 -10.63640 -10.51988 -10.08114 -9.61343 -8.55736 -8.40808 -8.29521 -8.07802 -7.45785 -6.92838 -6.65377 -4.62351 2.12929 2.61368 3.00706 3.01758 3.05789 3.43918 3.51263 3.67031 3.83039 4.31508 4.58388 5.11945 5.50489 5.55250 5.59274 5.61759 5.69369 5.70809 5.77348 5.88904 5.97740 6.06970 6.18420 6.22827 6.38390 6.51837 6.72716 6.95163 6.98011 7.12409 7.23992 7.39460 7.45116 7.63793 7.71867 7.86611 7.99008 8.16214 8.33410 8.50666 8.79785 9.72535 10.08816 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.006844 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.496496 B = 4089.985970 C = 5930.656019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.036 4.036 4 C -0.128 4.128 5 C -0.297 4.297 6 C 0.331 3.669 7 N -0.372 5.372 8 C -0.021 4.021 9 C -0.180 4.180 10 C -0.198 4.198 11 C 0.143 3.857 12 N -0.848 5.848 13 C 0.044 3.956 14 N -0.479 5.479 15 C 0.271 3.729 16 C -0.400 4.400 17 H 0.097 0.903 18 C 0.065 3.935 19 N -0.710 5.710 20 Si 0.914 3.086 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.259 1.259 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.130 0.870 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.331 0.669 34 H 0.342 0.658 35 H 0.170 0.830 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 3.298 -0.082 3.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C -0.084 4.084 4 C -0.152 4.152 5 C -0.322 4.322 6 C 0.100 3.900 7 N -0.042 5.042 8 C -0.150 4.150 9 C -0.205 4.205 10 C -0.204 4.204 11 C 0.013 3.987 12 N -0.378 5.378 13 C -0.087 4.087 14 N -0.197 5.197 15 C 0.144 3.856 16 C -0.432 4.432 17 H 0.115 0.885 18 C -0.161 4.161 19 N -0.332 5.332 20 Si 0.738 3.262 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.183 1.183 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.188 0.812 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.911 3.408 -0.056 3.528 hybrid contribution -0.094 -1.019 0.163 1.037 sum -1.005 2.389 0.107 2.594 Atomic orbital electron populations 1.22783 0.81418 1.02095 1.00042 1.85945 1.18520 1.27434 1.90142 1.20179 0.93468 0.83434 1.11320 1.20742 0.97993 0.91866 1.04649 1.20404 0.91992 0.97274 1.22553 1.18468 0.87713 0.85531 0.98252 1.41428 1.06292 1.03968 1.52530 1.21668 0.98618 0.82780 1.11891 1.20600 0.91815 0.97863 1.10258 1.19239 0.94679 0.92481 1.14009 1.19897 0.91993 0.98114 0.88735 1.58776 1.34783 1.33450 1.10754 1.22025 0.84719 0.96947 1.05045 1.68205 1.34976 0.94940 1.21560 1.17788 0.85187 0.90703 0.91916 1.19625 0.90644 0.93036 1.39867 0.88522 1.26131 0.98777 0.97633 0.93586 1.70097 1.10774 1.24827 1.27468 0.86202 0.78987 0.81622 0.79410 1.19228 1.20012 1.18274 0.89685 0.94064 0.94064 0.87104 0.87845 0.82714 0.85224 0.91237 0.95609 0.85709 0.84599 0.81227 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.83 101.05 0.99 1.51 16 2 O -0.31 -6.69 9.61 -18.48 -0.18 -6.87 16 3 C -0.04 -0.86 6.74 -38.11 -0.26 -1.11 16 4 C -0.13 -2.80 9.12 -39.21 -0.36 -3.15 16 5 C -0.30 -6.66 9.49 -38.97 -0.37 -7.03 16 6 C 0.33 8.16 7.48 -154.63 -1.16 7.00 16 7 N -0.37 -8.30 2.96 -62.58 -0.19 -8.49 16 8 C -0.02 -0.41 10.71 -16.62 -0.18 -0.59 16 9 C -0.18 -3.26 10.81 -39.76 -0.43 -3.69 16 10 C -0.20 -3.68 5.65 -104.80 -0.59 -4.27 16 11 C 0.14 2.18 7.28 -4.98 -0.04 2.14 16 12 N -0.85 -11.82 9.61 -11.41 -0.11 -11.93 16 13 C 0.04 0.95 10.91 -16.62 -0.18 0.77 16 14 N -0.48 -12.80 7.31 -10.06 -0.07 -12.88 16 15 C 0.27 7.24 6.56 -84.85 -0.56 6.68 16 16 C -0.40 -10.38 8.94 -37.88 -0.34 -10.72 16 17 H 0.10 2.41 7.31 -52.49 -0.38 2.03 16 18 C 0.06 1.57 5.50 -17.32 -0.10 1.48 16 19 N -0.71 -17.75 11.46 55.55 0.64 -17.11 16 20 Si 0.91 17.94 29.56 -169.99 -5.02 12.91 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 26 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 27 H 0.11 2.04 6.44 -52.49 -0.34 1.70 16 28 H 0.10 2.05 6.67 -52.49 -0.35 1.70 16 29 H 0.16 2.58 6.99 -52.49 -0.37 2.21 16 30 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.33 3.66 9.08 -39.29 -0.36 3.31 16 34 H 0.34 4.88 8.99 -39.29 -0.35 4.53 16 35 H 0.17 3.85 8.04 -52.49 -0.42 3.43 16 36 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -29.02 310.50 -8.00 -37.02 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -4.19 Total: 13.66 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.56 Total: -10.99 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.27 Total: -50.41 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.18 Total: -6.87 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.02 -8.00 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169726537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.333 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds