Wall clock time and date at job start Mon Mar 30 2020 02:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35594 * 116.99719 * 2 1 4 4 C 1.39103 * 120.52364 * 359.97438 * 3 2 1 5 5 C 1.38387 * 118.61158 * 179.76656 * 4 3 2 6 6 C 1.39727 * 119.59985 * 0.49850 * 5 4 3 7 7 N 1.39706 * 119.47735 * 179.76630 * 6 5 4 8 8 C 1.36658 * 125.67744 * 4.75061 * 7 6 5 9 9 C 1.34801 * 108.19051 * 180.26403 * 8 7 6 10 10 C 1.40991 * 107.48968 * 359.58808 * 9 8 7 11 11 C 1.50694 * 126.26083 * 180.12910 * 10 9 8 12 12 N 1.46897 * 109.47522 * 270.33589 * 11 10 9 13 13 C 1.34807 * 107.48453 * 0.41315 * 10 9 8 14 14 N 1.31783 * 121.04661 * 359.49006 * 6 5 4 15 15 C 1.33748 * 121.49593 * 0.25003 * 14 6 5 16 16 C 1.40961 * 119.85996 * 180.02562 * 15 14 6 17 17 H 1.08002 * 120.00566 * 180.02562 * 16 15 14 18 18 C 1.40037 * 119.99844 * 0.02562 * 16 15 14 19 19 N 1.30781 * 120.00004 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47165 * 90.00396 * 20 18 16 22 22 H 1.48508 * 109.47135 * 210.00228 * 20 18 16 23 23 H 1.48499 * 109.46953 * 330.00413 * 20 18 16 24 24 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47098 * 299.99400 * 1 2 3 26 26 H 1.08998 * 109.47482 * 59.99883 * 1 2 3 27 27 H 1.08001 * 120.69078 * 0.03830 * 4 3 2 28 28 H 1.07993 * 120.19865 * 180.25879 * 5 4 3 29 29 H 1.08002 * 125.90189 * 359.97438 * 8 7 6 30 30 H 1.08002 * 126.25604 * 179.71754 * 9 8 7 31 31 H 1.08998 * 109.47321 * 30.33595 * 11 10 9 32 32 H 1.09003 * 109.47634 * 150.33473 * 11 10 9 33 33 H 1.00900 * 111.00707 * 179.97438 * 12 11 10 34 34 H 1.00902 * 110.99955 * 303.95691 * 12 11 10 35 35 H 1.08001 * 125.90836 * 179.74912 * 13 10 9 36 36 H 0.97001 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2976 2.3816 -0.0005 5 6 1.9666 3.5931 0.0044 6 6 3.3637 3.6099 -0.0007 7 7 4.0364 4.8344 -0.0007 8 6 3.4510 6.0654 0.0961 9 6 4.4233 6.9982 0.0550 10 6 5.6548 6.3217 -0.0620 11 6 7.0180 6.9592 -0.1402 12 7 7.3546 7.2247 -1.5453 13 6 5.3894 5.0005 -0.0973 14 7 4.0570 2.4892 -0.0003 15 6 3.4547 1.2950 0.0002 16 6 4.2301 0.1179 0.0013 17 1 3.7462 -0.8477 0.0012 18 6 5.6280 0.2003 0.0024 19 7 6.2141 1.3695 0.0029 20 14 6.6557 -1.3595 0.0045 21 1 6.9293 -1.7740 -1.3950 22 1 7.9400 -1.1052 0.7055 23 1 5.9149 -2.4394 0.7047 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2181 2.3479 -0.0003 28 1 1.4121 4.5198 0.0084 29 1 2.3920 6.2578 0.1849 30 1 4.2845 8.0681 0.1048 31 1 7.0131 7.8968 0.4156 32 1 7.7594 6.2858 0.2899 33 1 8.2647 7.6529 -1.6245 34 1 7.3027 6.3803 -2.0953 35 1 6.1197 4.2099 -0.1866 36 1 7.1824 1.4266 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169726537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:02 Heat of formation + Delta-G solvation = 36.425223 kcal Electronic energy + Delta-G solvation = -20485.842897 eV Core-core repulsion = 17356.719780 eV Total energy + Delta-G solvation = -3129.123117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32849 -40.61714 -38.47735 -36.05819 -35.39138 -32.94092 -32.52228 -30.34498 -29.68501 -28.11571 -27.45849 -25.34263 -23.69295 -23.11600 -21.08878 -20.33458 -19.42119 -18.68091 -18.44534 -17.20500 -16.60836 -16.51513 -16.37880 -15.79234 -15.36934 -15.26176 -15.07820 -14.53288 -14.32471 -14.17596 -13.76461 -13.61853 -13.54344 -13.01689 -12.89155 -12.65931 -12.60623 -12.38138 -12.14786 -12.01475 -11.73942 -11.35311 -10.21789 -10.04856 -9.89330 -9.54728 -8.98632 -8.65479 -8.43124 -6.50012 0.39853 0.84613 1.38628 1.44026 1.52870 1.78323 2.06159 2.07685 2.19076 2.78199 2.81385 3.72419 3.94416 4.01780 4.12557 4.23798 4.30278 4.33382 4.47781 4.50232 4.55403 4.65478 4.74481 4.78029 4.82432 4.97227 5.16357 5.22841 5.28289 5.47853 5.58517 5.74703 6.08013 6.16627 6.23446 6.27958 6.44249 6.68729 6.69722 6.72193 7.04161 7.90791 8.33154 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.006844 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.496496 B = 4089.985970 C = 5930.656019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C -0.048 4.048 4 C -0.125 4.125 5 C -0.292 4.292 6 C 0.304 3.696 7 N -0.386 5.386 8 C -0.029 4.029 9 C -0.178 4.178 10 C -0.181 4.181 11 C 0.144 3.856 12 N -0.849 5.849 13 C 0.003 3.997 14 N -0.507 5.507 15 C 0.234 3.766 16 C -0.436 4.436 17 H 0.094 0.906 18 C 0.023 3.977 19 N -0.744 5.744 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.256 1.256 24 H 0.115 0.885 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.150 0.850 28 H 0.133 0.867 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.350 0.650 34 H 0.338 0.662 35 H 0.144 0.856 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 4.335 -0.063 4.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C -0.097 4.097 4 C -0.149 4.149 5 C -0.317 4.317 6 C 0.074 3.926 7 N -0.058 5.058 8 C -0.156 4.156 9 C -0.202 4.202 10 C -0.188 4.188 11 C 0.014 3.986 12 N -0.380 5.380 13 C -0.127 4.127 14 N -0.226 5.226 15 C 0.106 3.894 16 C -0.468 4.468 17 H 0.112 0.888 18 C -0.200 4.200 19 N -0.366 5.366 20 Si 0.808 3.192 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.179 1.179 24 H 0.133 0.867 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.198 0.802 30 H 0.179 0.821 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.837 4.485 -0.041 4.847 hybrid contribution 0.050 -1.228 0.151 1.238 sum -1.787 3.257 0.110 3.717 Atomic orbital electron populations 1.23159 0.78231 1.04631 1.01146 1.85896 1.21797 1.26625 1.90067 1.20218 0.93115 0.84995 1.11344 1.21144 0.99823 0.90807 1.03128 1.20815 0.91415 0.98830 1.20655 1.18923 0.88970 0.85989 0.98765 1.41568 1.06580 1.04062 1.53590 1.22262 1.00240 0.81800 1.11271 1.20999 0.90949 0.99194 1.09099 1.19656 0.96634 0.91356 1.11176 1.19942 0.90166 0.98721 0.89789 1.58723 1.36259 1.33264 1.09743 1.21936 0.84632 0.97693 1.08414 1.68128 1.36358 0.95701 1.22379 1.18259 0.87099 0.91135 0.92869 1.19839 0.91892 0.92952 1.42105 0.88822 1.26998 0.99345 1.00938 0.92695 1.70194 1.11265 1.26839 1.28289 0.85106 0.77223 0.77297 0.79540 1.18654 1.19119 1.17931 0.86657 0.92807 0.92822 0.83265 0.84874 0.80171 0.82059 0.89255 0.95563 0.83644 0.85010 0.83834 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.83 113.37 1.11 1.80 16 2 O -0.33 -14.34 9.61 -89.04 -0.86 -15.20 16 3 C -0.05 -2.34 6.74 23.23 0.16 -2.18 16 4 C -0.12 -5.29 9.12 22.51 0.21 -5.09 16 5 C -0.29 -12.83 9.49 22.67 0.22 -12.62 16 6 C 0.30 15.28 7.48 133.15 1.00 16.28 16 7 N -0.39 -17.44 2.96 -351.91 -1.04 -18.48 16 8 C -0.03 -1.06 10.71 83.15 0.89 -0.17 16 9 C -0.18 -6.03 10.81 22.16 0.24 -5.79 16 10 C -0.18 -6.63 5.65 -19.98 -0.11 -6.74 16 11 C 0.14 4.18 7.28 85.56 0.62 4.81 16 12 N -0.85 -22.31 9.61 -190.02 -1.83 -24.14 16 13 C 0.00 0.15 10.91 83.15 0.91 1.06 16 14 N -0.51 -28.37 7.31 -185.75 -1.36 -29.73 16 15 C 0.23 13.03 6.56 40.27 0.26 13.29 16 16 C -0.44 -23.70 8.94 23.37 0.21 -23.49 16 17 H 0.09 4.91 7.31 -2.91 -0.02 4.89 16 18 C 0.02 1.15 5.50 85.29 0.47 1.62 16 19 N -0.74 -39.15 11.46 21.84 0.25 -38.90 16 20 Si 0.99 37.87 29.56 68.60 2.03 39.90 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.05 1.44 7.69 -2.39 -0.02 1.42 16 26 H 0.05 1.43 7.69 -2.39 -0.02 1.41 16 27 H 0.15 5.02 6.44 -2.91 -0.02 5.00 16 28 H 0.13 4.91 6.67 -2.91 -0.02 4.89 16 29 H 0.18 5.49 6.99 -2.91 -0.02 5.47 16 30 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.35 7.03 9.08 -89.69 -0.81 6.21 16 34 H 0.34 9.47 8.99 -89.69 -0.81 8.67 16 35 H 0.14 7.02 8.04 -2.91 -0.02 7.00 16 36 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -66.02 310.50 2.88 -63.14 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.49 Total: 40.66 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 6.18 Total: -17.24 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -3.98 Total: -111.25 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.86 Total: -15.20 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -66.02 2.88 -63.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169726537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.564 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds