Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47122 * 269.99535 * 3 2 1 5 5 H 1.48496 * 109.47453 * 29.99818 * 3 2 1 6 6 H 1.48507 * 109.46935 * 149.99787 * 3 2 1 7 7 C 1.37878 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47006 * 180.53447 * 9 7 2 11 11 C 1.46896 * 110.99973 * 195.26271 * 10 9 7 12 12 C 1.50702 * 109.46899 * 75.79366 * 11 10 9 13 13 C 1.35344 * 126.91493 * 264.39768 * 12 11 10 14 14 N 1.33774 * 106.50075 * 179.90934 * 13 12 11 15 15 N 1.28635 * 108.87908 * 0.36846 * 14 13 12 16 16 N 1.28712 * 110.18455 * 359.76665 * 15 14 13 17 17 H 0.96994 * 125.87599 * 180.02562 * 16 15 14 18 18 C 1.46901 * 110.99874 * 71.30874 * 10 9 7 19 19 C 1.50697 * 109.47148 * 189.99877 * 18 10 9 20 20 C 1.38668 * 120.42159 * 269.72229 * 19 18 10 21 21 C 1.38626 * 118.42363 * 179.78119 * 20 19 18 22 22 C 1.38230 * 119.15830 * 0.51668 * 21 20 19 23 23 N 1.31848 * 120.76458 * 359.72089 * 22 21 20 24 24 C 1.31886 * 121.72469 * 0.02562 * 23 22 21 25 25 H 0.96990 * 119.99978 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46903 * 60.53925 * 9 7 2 27 27 H 1.08992 * 109.47080 * 300.53678 * 9 7 2 28 28 H 1.09004 * 109.46968 * 195.79380 * 11 10 9 29 29 H 1.08994 * 109.47152 * 315.79507 * 11 10 9 30 30 H 1.08001 * 126.75017 * 0.04623 * 13 12 11 31 31 H 1.09002 * 109.47385 * 310.00111 * 18 10 9 32 32 H 1.08997 * 109.46803 * 69.99499 * 18 10 9 33 33 H 1.08008 * 120.78962 * 0.02562 * 20 19 18 34 34 H 1.08002 * 120.42151 * 180.21898 * 21 20 19 35 35 H 1.07999 * 119.61661 * 179.74581 * 22 21 20 36 36 H 1.08009 * 119.61576 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0141 11 6 1.5452 -4.8774 -0.3464 12 6 1.3034 -4.9107 -1.8335 13 6 0.1666 -4.5623 -2.4802 14 7 0.4000 -4.7461 -3.7846 15 7 1.5991 -5.1870 -3.9348 16 7 2.1771 -5.3007 -2.7904 17 1 3.0832 -5.6120 -2.6397 18 6 2.8708 -3.7238 1.3194 19 6 4.0072 -4.7089 1.2241 20 6 3.7954 -6.0532 1.4902 21 6 4.8691 -6.9238 1.3855 22 6 6.1089 -6.4247 1.0324 23 7 6.2746 -5.1391 0.7912 24 6 5.2750 -4.2830 0.8763 25 1 -0.4849 0.8400 -0.0004 26 1 0.6321 -2.5613 -0.8945 27 1 0.6169 -2.5526 0.8854 28 1 2.1826 -5.7150 -0.0630 29 1 0.5928 -4.9517 0.1784 30 1 -0.7481 -4.2040 -2.0316 31 1 3.2592 -2.7481 1.6113 32 1 2.1538 -4.0672 2.0651 33 1 2.8162 -6.4141 1.7686 34 1 4.7397 -7.9779 1.5821 35 1 6.9514 -7.0957 0.9527 36 1 5.4492 -3.2369 0.6718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203199147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = 136.026954 kcal Electronic energy + Delta-G solvation = -20620.197963 eV Core-core repulsion = 17527.686652 eV Total energy + Delta-G solvation = -3092.511311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.88335 -40.17711 -37.14280 -33.07748 -33.00421 -32.43424 -31.87083 -30.71375 -27.54549 -26.65086 -24.27842 -23.49392 -22.68133 -22.02747 -21.56504 -20.40433 -17.80900 -17.01042 -16.65107 -16.17993 -15.86607 -15.32624 -15.00498 -14.41030 -14.30157 -14.06125 -13.76439 -13.39984 -13.09397 -12.92475 -12.41827 -12.08445 -12.05461 -11.43799 -11.34278 -11.00913 -10.74056 -10.71741 -10.48798 -10.18919 -10.07024 -9.80776 -9.42388 -9.35462 -8.95937 -8.75399 -8.51712 -7.61899 -6.11980 -4.14065 1.14923 1.27781 1.93407 2.93819 3.11656 3.27653 3.34647 3.36255 3.82952 4.35083 4.49067 4.72258 4.79062 4.85236 4.93895 5.03319 5.10212 5.21960 5.25424 5.29308 5.46720 5.66067 5.71995 5.77233 5.92523 6.03758 6.09422 6.24639 6.36782 6.52740 6.75684 6.98724 7.09912 7.17961 7.62337 7.83565 7.97091 8.02593 8.32146 8.81651 8.91864 9.50900 10.98551 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.007243 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.453811 B = 3864.828996 C = 5519.099166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.191 3.809 10 N -0.528 5.528 11 C 0.112 3.888 12 C 0.022 3.978 13 C -0.041 4.041 14 N -0.270 5.270 15 N -0.096 5.096 16 N -0.383 5.383 17 H 0.443 0.557 18 C 0.101 3.899 19 C -0.116 4.116 20 C -0.081 4.081 21 C -0.177 4.177 22 C 0.085 3.915 23 N -0.487 5.487 24 C 0.118 3.882 25 H 0.263 0.737 26 H 0.040 0.960 27 H -0.002 1.002 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.187 0.813 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -13.780 4.298 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.253 5.253 11 C -0.019 4.019 12 C -0.113 4.113 13 C -0.198 4.198 14 N -0.137 5.137 15 N -0.076 5.076 16 N -0.103 5.103 17 H 0.287 0.713 18 C -0.027 4.027 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.197 4.197 22 C -0.072 4.072 23 N -0.195 5.195 24 C -0.039 4.039 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.015 0.985 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.204 0.796 31 H 0.121 0.879 32 H 0.056 0.944 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.136 -13.359 2.144 15.296 hybrid contribution -0.610 0.469 2.072 2.210 sum 6.526 -12.891 4.215 15.051 Atomic orbital electron populations 1.69930 1.06014 1.26990 1.50404 1.24950 0.94853 0.99271 0.95212 0.86532 0.79711 0.83159 0.78233 1.20624 1.21256 1.19810 1.21063 0.93434 0.89712 1.50835 0.91907 1.19873 0.89814 0.86779 0.96889 1.62187 1.32830 1.02719 1.27521 1.20604 0.99306 0.95128 0.86821 1.22122 0.90737 1.04374 0.94096 1.23368 1.00322 1.06165 0.89972 1.75014 1.06905 1.14124 1.17644 1.78172 1.03570 1.19586 1.06282 1.44921 1.15270 1.45042 1.05081 0.71257 1.20958 0.92422 0.98501 0.90826 1.21128 0.97162 0.94927 0.98617 1.21564 0.99136 0.93011 0.97056 1.22073 0.94259 1.00768 1.02612 1.22698 0.96437 0.92156 0.95898 1.67732 1.34565 1.03572 1.13667 1.22797 0.87808 0.99774 0.93536 0.92772 0.94245 0.98458 0.90455 0.92022 0.79569 0.87944 0.94360 0.85186 0.85238 0.83303 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.51 -13.26 8.43 -34.44 -0.29 -13.55 16 8 H 0.06 1.61 7.55 -52.49 -0.40 1.21 16 9 C 0.19 4.38 4.55 -4.97 -0.02 4.36 16 10 N -0.53 -9.43 4.37 -238.96 -1.04 -10.47 16 11 C 0.11 1.64 5.41 -4.98 -0.03 1.61 16 12 C 0.02 0.35 6.35 -82.09 -0.52 -0.18 16 13 C -0.04 -0.71 10.98 -17.74 -0.19 -0.91 16 14 N -0.27 -5.18 12.41 30.23 0.38 -4.81 16 15 N -0.10 -1.71 13.38 60.35 0.81 -0.91 16 16 N -0.38 -5.83 6.98 33.54 0.23 -5.60 16 17 H 0.44 5.35 8.96 -190.41 -1.71 3.64 16 18 C 0.10 1.58 4.99 -4.98 -0.02 1.55 16 19 C -0.12 -1.54 4.95 -104.49 -0.52 -2.06 16 20 C -0.08 -0.89 8.03 -39.28 -0.32 -1.20 16 21 C -0.18 -1.72 10.11 -39.44 -0.40 -2.12 16 22 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 23 N -0.49 -6.74 10.36 -13.25 -0.14 -6.87 16 24 C 0.12 1.67 10.86 -17.55 -0.19 1.48 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 26 H 0.04 0.99 6.54 -51.93 -0.34 0.65 16 27 H 0.00 -0.06 8.06 -51.93 -0.42 -0.48 16 28 H 0.08 0.94 5.01 -51.93 -0.26 0.68 16 29 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 30 H 0.19 3.01 8.06 -52.49 -0.42 2.58 16 31 H 0.10 1.79 7.02 -51.93 -0.36 1.43 16 32 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.13 1.19 7.68 -52.48 -0.40 0.79 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.16 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -31.00 310.38 -7.72 -38.72 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.55 Total: 2.67 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.80 Total: -8.78 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.97 Total: -53.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.00 -7.72 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203199147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.749 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds