Wall clock time and date at job start Mon Mar 30 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47122 * 269.99535 * 3 2 1 5 5 H 1.48496 * 109.47453 * 29.99818 * 3 2 1 6 6 H 1.48507 * 109.46935 * 149.99787 * 3 2 1 7 7 C 1.37878 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47006 * 180.53447 * 9 7 2 11 11 C 1.46896 * 110.99973 * 195.26271 * 10 9 7 12 12 C 1.50702 * 109.46899 * 75.79366 * 11 10 9 13 13 C 1.35344 * 126.91493 * 264.39768 * 12 11 10 14 14 N 1.33774 * 106.50075 * 179.90934 * 13 12 11 15 15 N 1.28635 * 108.87908 * 0.36846 * 14 13 12 16 16 N 1.28712 * 110.18455 * 359.76665 * 15 14 13 17 17 H 0.96994 * 125.87599 * 180.02562 * 16 15 14 18 18 C 1.46901 * 110.99874 * 71.30874 * 10 9 7 19 19 C 1.50697 * 109.47148 * 189.99877 * 18 10 9 20 20 C 1.38668 * 120.42159 * 269.72229 * 19 18 10 21 21 C 1.38626 * 118.42363 * 179.78119 * 20 19 18 22 22 C 1.38230 * 119.15830 * 0.51668 * 21 20 19 23 23 N 1.31848 * 120.76458 * 359.72089 * 22 21 20 24 24 C 1.31886 * 121.72469 * 0.02562 * 23 22 21 25 25 H 0.96990 * 119.99978 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46903 * 60.53925 * 9 7 2 27 27 H 1.08992 * 109.47080 * 300.53678 * 9 7 2 28 28 H 1.09004 * 109.46968 * 195.79380 * 11 10 9 29 29 H 1.08994 * 109.47152 * 315.79507 * 11 10 9 30 30 H 1.08001 * 126.75017 * 0.04623 * 13 12 11 31 31 H 1.09002 * 109.47385 * 310.00111 * 18 10 9 32 32 H 1.08997 * 109.46803 * 69.99499 * 18 10 9 33 33 H 1.08008 * 120.78962 * 0.02562 * 20 19 18 34 34 H 1.08002 * 120.42151 * 180.21898 * 21 20 19 35 35 H 1.07999 * 119.61661 * 179.74581 * 22 21 20 36 36 H 1.08009 * 119.61576 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0141 11 6 1.5452 -4.8774 -0.3464 12 6 1.3034 -4.9107 -1.8335 13 6 0.1666 -4.5623 -2.4802 14 7 0.4000 -4.7461 -3.7846 15 7 1.5991 -5.1870 -3.9348 16 7 2.1771 -5.3007 -2.7904 17 1 3.0832 -5.6120 -2.6397 18 6 2.8708 -3.7238 1.3194 19 6 4.0072 -4.7089 1.2241 20 6 3.7954 -6.0532 1.4902 21 6 4.8691 -6.9238 1.3855 22 6 6.1089 -6.4247 1.0324 23 7 6.2746 -5.1391 0.7912 24 6 5.2750 -4.2830 0.8763 25 1 -0.4849 0.8400 -0.0004 26 1 0.6321 -2.5613 -0.8945 27 1 0.6169 -2.5526 0.8854 28 1 2.1826 -5.7150 -0.0630 29 1 0.5928 -4.9517 0.1784 30 1 -0.7481 -4.2040 -2.0316 31 1 3.2592 -2.7481 1.6113 32 1 2.1538 -4.0672 2.0651 33 1 2.8162 -6.4141 1.7686 34 1 4.7397 -7.9779 1.5821 35 1 6.9514 -7.0957 0.9527 36 1 5.4492 -3.2369 0.6718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203199147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:57 Heat of formation + Delta-G solvation = 113.646584 kcal Electronic energy + Delta-G solvation = -20621.168448 eV Core-core repulsion = 17527.686652 eV Total energy + Delta-G solvation = -3093.481797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.22485 -41.13315 -38.51762 -34.86905 -34.33675 -33.70327 -32.88291 -32.00905 -29.27719 -27.84821 -25.85295 -24.42969 -24.07907 -23.38455 -22.82690 -21.76082 -19.12083 -18.54564 -17.89645 -17.24335 -17.18509 -16.81868 -16.29747 -15.92927 -15.70002 -15.30433 -14.93755 -14.53707 -14.26346 -14.01068 -13.98828 -13.52197 -13.31290 -13.13838 -12.70983 -12.64494 -12.54720 -12.15338 -12.00318 -11.73552 -11.55382 -11.31059 -10.69764 -10.58196 -10.32994 -10.15848 -9.86314 -9.09229 -8.17790 -6.25011 0.22640 0.39219 0.61741 1.40176 1.42424 1.50997 1.54844 1.91423 2.40820 2.87137 3.16574 3.40333 3.56161 3.62458 3.85674 3.93777 4.01932 4.06222 4.16543 4.17927 4.39810 4.50468 4.57232 4.73965 4.78695 4.92705 4.98830 5.17288 5.21282 5.25510 5.27979 5.44875 5.67341 5.86440 5.99358 6.08186 6.27578 6.53704 6.89824 7.11030 7.43705 7.45212 8.92247 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.007243 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.453811 B = 3864.828996 C = 5519.099166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.283 1.283 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.207 3.793 10 N -0.534 5.534 11 C 0.116 3.884 12 C 0.027 3.973 13 C -0.057 4.057 14 N -0.299 5.299 15 N -0.108 5.108 16 N -0.366 5.366 17 H 0.457 0.543 18 C 0.108 3.892 19 C -0.124 4.124 20 C -0.078 4.078 21 C -0.161 4.161 22 C 0.082 3.918 23 N -0.513 5.513 24 C 0.098 3.902 25 H 0.262 0.738 26 H 0.016 0.984 27 H -0.021 1.021 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.193 0.807 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 -15.985 5.237 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.081 3.919 10 N -0.259 5.259 11 C -0.013 4.013 12 C -0.109 4.109 13 C -0.215 4.215 14 N -0.166 5.166 15 N -0.089 5.089 16 N -0.089 5.089 17 H 0.305 0.695 18 C -0.020 4.020 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.181 4.181 22 C -0.076 4.076 23 N -0.222 5.222 24 C -0.058 4.058 25 H 0.071 0.929 26 H 0.034 0.966 27 H -0.004 1.004 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.210 0.790 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.173 0.827 34 H 0.186 0.814 35 H 0.195 0.805 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.437 -15.581 3.083 17.985 hybrid contribution -0.918 1.030 1.816 2.281 sum 7.519 -14.551 4.899 17.096 Atomic orbital electron populations 1.70036 1.07307 1.27602 1.51910 1.25705 0.95580 1.02474 0.95268 0.85626 0.78951 0.79571 0.77948 1.20931 1.20886 1.18764 1.21436 0.93509 0.91232 1.49528 0.92235 1.19456 0.89831 0.87839 0.94761 1.61971 1.31759 1.02907 1.29267 1.20704 1.00426 0.94418 0.85780 1.22286 0.90279 1.03579 0.94772 1.23637 1.01419 1.06587 0.89859 1.74983 1.07691 1.15282 1.18618 1.78101 1.03465 1.20077 1.07214 1.44910 1.15736 1.43909 1.04297 0.69500 1.20812 0.93227 0.98185 0.89791 1.20816 0.95697 0.95656 1.00513 1.21841 1.00825 0.91766 0.95965 1.22452 0.92936 1.02401 1.00275 1.23293 0.98221 0.91412 0.94636 1.67712 1.34703 1.05001 1.14789 1.22614 0.88639 0.99474 0.95072 0.92876 0.96556 1.00370 0.87090 0.90912 0.79028 0.90699 0.93161 0.82731 0.81368 0.80475 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.29 21.45 0.28 -53.28 16 2 C 0.01 0.45 5.46 84.65 0.46 0.92 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.52 -27.35 8.43 25.60 0.22 -27.13 16 8 H 0.06 3.11 7.55 -2.92 -0.02 3.09 16 9 C 0.21 9.66 4.55 85.56 0.39 10.05 16 10 N -0.53 -18.79 4.37 -909.95 -3.97 -22.76 16 11 C 0.12 3.18 5.41 85.56 0.46 3.64 16 12 C 0.03 0.82 6.35 41.35 0.26 1.08 16 13 C -0.06 -2.00 10.98 83.73 0.92 -1.08 16 14 N -0.30 -11.49 12.41 -58.26 -0.72 -12.21 16 15 N -0.11 -3.80 13.38 37.02 0.50 -3.31 16 16 N -0.37 -10.61 6.98 -47.79 -0.33 -10.94 16 17 H 0.46 10.05 8.96 -219.97 -1.97 8.08 16 18 C 0.11 3.29 4.99 85.56 0.43 3.72 16 19 C -0.12 -3.10 4.95 -19.78 -0.10 -3.19 16 20 C -0.08 -1.38 8.03 22.47 0.18 -1.20 16 21 C -0.16 -2.35 10.11 22.36 0.23 -2.13 16 22 C 0.08 1.50 11.18 84.69 0.95 2.45 16 23 N -0.51 -13.36 10.36 -195.84 -2.03 -15.39 16 24 C 0.10 2.73 10.86 84.67 0.92 3.65 16 25 H 0.26 14.46 8.31 -92.72 -0.77 13.69 16 26 H 0.02 0.84 6.54 -2.39 -0.02 0.82 16 27 H -0.02 -1.07 8.06 -2.39 -0.02 -1.09 16 28 H 0.11 2.29 5.01 -2.38 -0.01 2.27 16 29 H 0.07 1.89 8.00 -2.39 -0.02 1.87 16 30 H 0.19 6.29 8.06 -2.91 -0.02 6.27 16 31 H 0.07 2.69 7.02 -2.39 -0.02 2.67 16 32 H 0.05 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.16 2.02 7.68 -2.91 -0.02 1.99 16 34 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -68.25 310.38 0.20 -68.05 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.86 Total: 13.55 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.31 Total: -9.22 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -6.28 Total: -117.89 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.25 0.20 -68.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203199147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.699 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds