Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53005 * 109.47037 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47275 * 179.97438 * 4 3 2 6 6 C 1.34611 * 125.80299 * 124.99548 * 5 4 3 7 7 C 1.37906 * 107.39353 * 179.97438 * 6 5 4 8 8 C 1.47904 * 126.37885 * 179.97438 * 7 6 5 9 9 C 1.39966 * 119.45847 * 179.97438 * 8 7 6 10 10 C 1.36541 * 119.46446 * 179.74439 * 9 8 7 11 11 C 1.41327 * 118.42834 * 0.25617 * 10 9 8 12 12 C 1.41063 * 120.54939 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00221 * 203.71677 * 12 11 10 14 14 C 1.39956 * 120.00027 * 23.72416 * 12 11 10 15 15 N 1.30835 * 120.00141 * 17.64835 * 14 12 11 16 16 Si 1.86804 * 119.99931 * 197.65182 * 14 12 11 17 17 H 1.48501 * 109.46917 * 89.99606 * 16 14 12 18 18 H 1.48496 * 109.46931 * 209.99826 * 16 14 12 19 19 H 1.48497 * 109.46876 * 329.99615 * 16 14 12 20 20 C 1.40907 * 118.90262 * 359.97438 * 11 10 9 21 21 N 1.31298 * 120.40378 * 359.97438 * 20 11 10 22 22 C 1.41135 * 107.24855 * 0.22748 * 7 6 5 23 23 N 1.30531 * 108.09591 * 359.61686 * 22 7 6 24 24 H 1.09003 * 109.47249 * 60.00133 * 1 2 3 25 25 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47544 * 300.00171 * 1 2 3 27 27 H 1.08997 * 109.47787 * 59.99799 * 3 2 1 28 28 H 1.09005 * 109.47009 * 299.99435 * 3 2 1 29 29 H 1.09004 * 109.47475 * 59.99793 * 4 3 2 30 30 H 1.09003 * 109.47122 * 299.99922 * 4 3 2 31 31 H 1.08000 * 126.30389 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.26120 * 0.03112 * 9 8 7 33 33 H 1.08003 * 120.78383 * 180.27760 * 10 9 8 34 34 H 0.96990 * 120.00241 * 180.02562 * 15 14 12 35 35 H 1.08006 * 119.79729 * 179.97438 * 20 11 10 36 36 H 1.07995 * 125.95071 * 179.73882 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0240 2.9879 0.8926 7 6 5.3283 4.2845 0.5350 8 6 6.2668 5.1898 1.2331 9 6 6.4683 6.4847 0.7414 10 6 7.3307 7.3223 1.3889 11 6 7.9976 6.8433 2.5391 12 6 8.8984 7.6704 3.2422 13 1 9.6721 7.2294 3.8533 14 6 8.7896 9.0625 3.1479 15 7 7.6818 9.6040 2.7105 16 14 10.2262 10.1475 3.6465 17 1 11.0993 10.3847 2.4689 18 1 9.7135 11.4461 4.1522 19 1 11.0077 9.4741 4.7146 20 6 7.7478 5.5258 2.9721 21 7 6.9084 4.7586 2.3159 22 6 4.5732 4.5890 -0.6178 23 7 3.8696 3.5352 -0.9316 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8901 29 1 3.8567 0.6438 -0.8908 30 1 3.8574 0.6435 0.8891 31 1 5.4276 2.4453 1.7347 32 1 5.9425 6.8200 -0.1403 33 1 7.4988 8.3272 1.0306 34 1 7.6065 10.5687 2.6448 35 1 8.2500 5.1448 3.8492 36 1 4.5782 5.5292 -1.1491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240623321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = 34.696950 kcal Electronic energy + Delta-G solvation = -19360.432178 eV Core-core repulsion = 16231.234117 eV Total energy + Delta-G solvation = -3129.198061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02499 -39.96817 -38.96299 -36.03700 -34.81590 -32.62639 -32.38453 -30.93189 -29.75740 -27.43876 -26.70011 -24.63701 -23.65512 -23.41831 -21.30274 -21.12712 -19.25290 -18.41422 -17.42323 -17.27443 -17.04368 -16.39154 -16.24331 -16.01763 -15.62319 -15.41036 -14.89509 -14.49453 -14.19973 -14.10420 -13.59843 -13.51589 -13.37609 -13.09682 -12.96200 -12.73929 -12.56366 -12.32437 -12.21481 -11.76155 -11.51662 -11.22631 -10.77201 -10.36891 -10.24567 -10.12733 -9.89196 -8.84606 -8.61038 -6.33031 0.51913 1.01115 1.13616 1.40775 1.44033 1.47495 1.54631 2.06399 2.19917 2.78224 2.85077 3.60490 3.83192 3.88538 3.94312 3.99075 4.16525 4.22798 4.42163 4.46862 4.54044 4.54612 4.65390 4.72353 4.81844 4.83778 4.84591 5.06812 5.22384 5.24160 5.42895 5.59358 5.89129 5.95401 6.02199 6.08602 6.14946 6.53296 6.73772 6.77376 6.83997 7.76090 8.24190 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.053993 B = 0.002977 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.458506 B = 9404.707626 C = 9591.926334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.060 3.940 4 C 0.136 3.864 5 N -0.369 5.369 6 C 0.072 3.928 7 C -0.177 4.177 8 C 0.052 3.948 9 C -0.136 4.136 10 C -0.156 4.156 11 C 0.034 3.966 12 C -0.475 4.475 13 H 0.087 0.913 14 C 0.034 3.966 15 N -0.816 5.816 16 Si 0.988 3.012 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.256 1.256 20 C -0.036 4.036 21 N -0.471 5.471 22 C 0.057 3.943 23 N -0.319 5.319 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.191 0.809 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.293 0.707 35 H 0.137 0.863 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 -10.419 -4.338 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.018 4.018 4 C 0.015 3.985 5 N -0.152 5.152 6 C -0.076 4.076 7 C -0.189 4.189 8 C -0.086 4.086 9 C -0.156 4.156 10 C -0.181 4.181 11 C 0.030 3.970 12 C -0.504 4.504 13 H 0.105 0.895 14 C -0.182 4.182 15 N -0.440 5.440 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.179 1.179 20 C -0.198 4.198 21 N -0.179 5.179 22 C -0.130 4.130 23 N -0.140 5.140 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.208 0.792 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.778 -11.869 -4.908 16.142 hybrid contribution 1.072 2.222 0.595 2.538 sum -8.706 -9.648 -4.312 13.692 Atomic orbital electron populations 1.22978 0.78756 1.04335 1.00867 1.87744 1.22003 1.26905 1.95659 1.22529 0.92755 0.85146 1.01338 1.21578 0.92353 0.78030 1.06524 1.48277 1.33879 1.12199 1.20871 1.23017 0.93645 0.95063 0.95829 1.18991 1.05104 0.94543 1.00291 1.18581 1.01503 0.92208 0.96292 1.21464 0.99461 0.94130 1.00530 1.21372 1.00632 1.00033 0.96083 1.18865 0.92473 0.93682 0.91984 1.19826 1.13312 0.91694 1.25564 0.89536 1.26873 0.98716 0.99948 0.92694 1.69840 1.26024 1.14366 1.33807 0.85103 0.77590 0.76888 0.79599 1.18634 1.19262 1.17904 1.22594 1.02351 0.93171 1.01663 1.66984 1.06744 1.37294 1.06855 1.24151 0.94670 0.98284 0.95847 1.76940 1.25196 0.97238 1.14621 0.93287 0.87490 0.93352 0.93058 0.92496 0.88158 0.85719 0.79210 0.85698 0.86575 0.89632 0.84579 0.78461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.89 10.70 -148.98 -1.59 -9.48 16 3 C 0.06 1.23 6.12 71.98 0.44 1.67 16 4 C 0.14 2.83 6.86 86.38 0.59 3.42 16 5 N -0.37 -10.71 3.66 -346.12 -1.27 -11.98 16 6 C 0.07 2.38 11.22 84.19 0.94 3.32 16 7 C -0.18 -6.87 6.10 -20.08 -0.12 -6.99 16 8 C 0.05 2.39 6.76 41.94 0.28 2.67 16 9 C -0.14 -6.30 9.54 22.29 0.21 -6.09 16 10 C -0.16 -8.03 8.74 22.63 0.20 -7.84 16 11 C 0.03 1.83 5.59 -21.17 -0.12 1.71 16 12 C -0.47 -24.47 9.06 23.38 0.21 -24.26 16 13 H 0.09 4.23 7.91 -2.91 -0.02 4.21 16 14 C 0.03 1.64 5.17 85.26 0.44 2.08 16 15 N -0.82 -40.70 10.92 21.83 0.24 -40.46 16 16 Si 0.99 36.10 29.60 68.60 2.03 38.13 16 17 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 18 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 20 C -0.04 -1.82 10.97 85.43 0.94 -0.88 16 21 N -0.47 -22.86 10.04 -182.70 -1.83 -24.69 16 22 C 0.06 1.93 11.40 85.60 0.98 2.91 16 23 N -0.32 -10.34 12.34 -56.34 -0.70 -11.04 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.12 2.06 8.06 -2.39 -0.02 2.04 16 31 H 0.19 5.64 8.06 -2.91 -0.02 5.62 16 32 H 0.13 4.95 7.00 -2.91 -0.02 4.93 16 33 H 0.12 6.12 6.19 -2.91 -0.02 6.10 16 34 H 0.29 13.10 8.30 -92.72 -0.77 12.33 16 35 H 0.14 6.35 8.06 -2.91 -0.02 6.33 16 36 H 0.20 5.73 7.31 -2.91 -0.02 5.71 16 Total: -1.00 -62.35 316.85 4.21 -58.14 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 1.09 Total: 28.04 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 6.24 Total: -26.66 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.56 Total: -88.17 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.59 Total: -9.48 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -62.35 4.21 -58.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240623321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.838 kcal (2) G-P(sol) polarization free energy of solvation -62.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds