Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99989 * 2 1 4 4 C 1.53000 * 109.47007 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47239 * 180.02562 * 4 3 2 6 6 C 1.34653 * 125.80026 * 125.26657 * 5 4 3 7 7 C 1.38008 * 107.37373 * 180.14627 * 6 5 4 8 8 C 1.47800 * 126.38531 * 179.86949 * 7 6 5 9 9 C 1.39712 * 120.65707 * 309.97340 * 8 7 6 10 10 C 1.38347 * 118.47981 * 180.26570 * 9 8 7 11 11 C 1.39079 * 119.73210 * 359.47581 * 10 9 8 12 12 N 1.31275 * 121.34725 * 0.26330 * 11 10 9 13 13 C 1.33719 * 121.63229 * 0.02562 * 12 11 10 14 14 C 1.40768 * 119.94354 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99716 * 180.02562 * 14 13 12 16 16 C 1.40107 * 119.99498 * 0.02562 * 14 13 12 17 17 N 1.30722 * 120.00383 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99287 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47346 * 90.00223 * 18 16 14 20 20 H 1.48505 * 109.46865 * 209.99588 * 18 16 14 21 21 H 1.48496 * 109.47736 * 329.99658 * 18 16 14 22 22 C 1.41179 * 107.22341 * 359.61636 * 7 6 5 23 23 N 1.30519 * 108.10810 * 0.23621 * 22 7 6 24 24 H 1.09002 * 109.47034 * 59.99822 * 1 2 3 25 25 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47343 * 299.99977 * 1 2 3 27 27 H 1.09004 * 109.46659 * 60.00272 * 3 2 1 28 28 H 1.08996 * 109.47175 * 299.99978 * 3 2 1 29 29 H 1.09004 * 109.46819 * 60.00823 * 4 3 2 30 30 H 1.08996 * 109.47505 * 300.00229 * 4 3 2 31 31 H 1.08003 * 126.31164 * 0.03694 * 6 5 4 32 32 H 1.08000 * 120.75912 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.13659 * 179.76087 * 10 9 8 34 34 H 1.08002 * 119.32528 * 180.28349 * 11 10 9 35 35 H 0.97001 * 119.99597 * 179.97438 * 17 16 14 36 36 H 1.08000 * 125.93895 * 180.24103 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0274 2.9858 0.8935 7 6 5.3276 4.2856 0.5397 8 6 6.2649 5.1901 1.2381 9 6 6.1804 5.3746 2.6204 10 6 7.0770 6.2360 3.2270 11 6 8.0388 6.8835 2.4590 12 7 8.1139 6.6997 1.1614 13 6 7.2714 5.8841 0.5187 14 6 7.3837 5.7136 -0.8741 15 1 6.7035 5.0554 -1.3941 16 6 8.3779 6.3979 -1.5856 17 7 9.2009 7.1950 -0.9562 18 14 8.5273 6.1711 -3.4338 19 1 7.6862 7.1803 -4.1260 20 1 9.9449 6.3452 -3.8408 21 1 8.0700 4.8077 -3.8039 22 6 4.5768 4.5880 -0.6170 23 7 3.8702 3.5358 -0.9286 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8892 30 1 3.8568 0.6439 0.8908 31 1 5.4347 2.4410 1.7324 32 1 5.4297 4.8596 3.2014 33 1 7.0333 6.4013 4.2934 34 1 8.7384 7.5510 2.9401 35 1 9.8895 7.6684 -1.4489 36 1 4.5857 5.5267 -1.1510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240631208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 65.864941 kcal Electronic energy + Delta-G solvation = -19990.974539 eV Core-core repulsion = 16863.128024 eV Total energy + Delta-G solvation = -3127.846515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49246 -38.17269 -37.86098 -33.72851 -33.56510 -31.34075 -30.18241 -29.51424 -27.73368 -26.28375 -25.52404 -23.38290 -22.03177 -21.32405 -19.92823 -19.41445 -17.45369 -17.07573 -16.35363 -15.92868 -15.52370 -15.35616 -14.51006 -14.33066 -14.15709 -13.72660 -13.50657 -13.20551 -12.62866 -12.40174 -12.03897 -11.89869 -11.84257 -11.60069 -11.49922 -11.19480 -11.07524 -10.94047 -10.45760 -10.18775 -9.92357 -9.78169 -9.38659 -8.83843 -8.45338 -7.91452 -7.55656 -7.07304 -6.40680 -4.47792 2.30726 2.71307 2.73730 2.93826 3.09619 3.13809 3.24255 3.72427 3.74490 3.94885 4.67056 4.75861 4.81729 5.07607 5.11922 5.16597 5.37312 5.40031 5.43066 5.61099 5.74101 5.91295 6.11151 6.13386 6.31361 6.45889 6.64022 6.65284 6.82128 6.93749 7.12006 7.27060 7.38927 7.51203 7.68230 7.79923 8.08264 8.26990 8.32626 8.65794 8.96425 10.11691 10.29811 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.004895 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.721676 B = 5719.228254 C = 6995.796458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.146 3.854 5 N -0.382 5.382 6 C 0.026 3.974 7 C -0.119 4.119 8 C -0.190 4.190 9 C -0.042 4.042 10 C -0.321 4.321 11 C 0.126 3.874 12 N -0.483 5.483 13 C 0.267 3.733 14 C -0.419 4.419 15 H 0.090 0.910 16 C 0.069 3.931 17 N -0.711 5.711 18 Si 0.902 3.098 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.261 1.261 22 C 0.069 3.931 23 N -0.316 5.316 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.166 0.834 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.273 0.727 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 -8.963 1.282 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.023 3.977 5 N -0.167 5.167 6 C -0.117 4.117 7 C -0.131 4.131 8 C -0.196 4.196 9 C -0.067 4.067 10 C -0.344 4.344 11 C -0.041 4.041 12 N -0.195 5.195 13 C 0.143 3.857 14 C -0.450 4.450 15 H 0.108 0.892 16 C -0.157 4.157 17 N -0.332 5.332 18 Si 0.726 3.274 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.117 4.117 23 N -0.137 5.137 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.184 0.816 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.084 0.916 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.227 -9.213 -0.099 13.765 hybrid contribution -0.104 0.054 0.443 0.458 sum -10.332 -9.159 0.344 13.811 Atomic orbital electron populations 1.22743 0.80438 1.02754 1.00265 1.87771 1.20203 1.27567 1.95597 1.22727 0.93288 0.84705 1.01855 1.21164 0.91834 0.80199 1.04481 1.47895 1.35093 1.11351 1.22327 1.22796 0.96344 0.95660 0.96939 1.19052 1.02455 0.93015 0.98551 1.18703 1.01813 1.06479 0.92589 1.20847 0.96416 0.96012 0.93378 1.21186 1.04851 1.09616 0.98788 1.22564 0.94580 0.95429 0.91550 1.68771 1.25404 1.18397 1.06934 1.18537 0.86515 0.87238 0.93396 1.19687 1.12372 1.21563 0.91373 0.89160 1.26124 0.94963 0.94099 1.00486 1.70135 1.10317 1.16044 1.36718 0.86403 0.78348 0.80118 0.82541 1.19223 1.20102 1.18464 1.24094 0.94079 0.97219 0.96310 1.76953 1.25693 0.97249 1.13855 0.93850 0.89456 0.93973 0.92812 0.91627 0.89519 0.88365 0.81633 0.88924 0.88973 0.86602 0.91577 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.48 10.70 -35.23 -0.38 -4.86 16 3 C 0.05 0.62 6.12 37.16 0.23 0.84 16 4 C 0.15 1.84 6.86 -4.04 -0.03 1.81 16 5 N -0.38 -6.38 3.66 -60.72 -0.22 -6.60 16 6 C 0.03 0.47 11.41 -16.40 -0.19 0.28 16 7 C -0.12 -2.51 5.08 -104.96 -0.53 -3.04 16 8 C -0.19 -4.50 5.83 -104.06 -0.61 -5.11 16 9 C -0.04 -0.93 9.86 -38.99 -0.38 -1.31 16 10 C -0.32 -7.09 10.10 -39.23 -0.40 -7.48 16 11 C 0.13 3.03 11.17 -17.48 -0.20 2.84 16 12 N -0.48 -13.15 7.85 -10.90 -0.09 -13.23 16 13 C 0.27 7.11 6.57 -84.71 -0.56 6.55 16 14 C -0.42 -10.93 8.47 -37.93 -0.32 -11.26 16 15 H 0.09 2.26 5.37 -52.49 -0.28 1.97 16 16 C 0.07 1.74 5.50 -17.32 -0.10 1.64 16 17 N -0.71 -18.69 11.46 55.56 0.64 -18.05 16 18 Si 0.90 18.64 29.56 -169.99 -5.02 13.61 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 22 C 0.07 1.40 9.92 -16.99 -0.17 1.23 16 23 N -0.32 -6.01 12.34 30.85 0.38 -5.63 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.03 8.06 -51.93 -0.42 0.61 16 31 H 0.17 2.49 8.06 -52.48 -0.42 2.07 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 36 H 0.18 3.57 7.85 -52.49 -0.41 3.16 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -30.30 315.44 -6.55 -36.84 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.47 Total: 4.76 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.13 Total: -11.59 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.71 Total: -43.52 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.38 Total: -4.86 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.30 -6.55 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240631208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.708 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds