Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99989 * 2 1 4 4 C 1.53000 * 109.47007 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47239 * 180.02562 * 4 3 2 6 6 C 1.34653 * 125.80026 * 125.26657 * 5 4 3 7 7 C 1.38008 * 107.37373 * 180.14627 * 6 5 4 8 8 C 1.47800 * 126.38531 * 179.86949 * 7 6 5 9 9 C 1.39712 * 120.65707 * 309.97340 * 8 7 6 10 10 C 1.38347 * 118.47981 * 180.26570 * 9 8 7 11 11 C 1.39079 * 119.73210 * 359.47581 * 10 9 8 12 12 N 1.31275 * 121.34725 * 0.26330 * 11 10 9 13 13 C 1.33719 * 121.63229 * 0.02562 * 12 11 10 14 14 C 1.40768 * 119.94354 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99716 * 180.02562 * 14 13 12 16 16 C 1.40107 * 119.99498 * 0.02562 * 14 13 12 17 17 N 1.30722 * 120.00383 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99287 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47346 * 90.00223 * 18 16 14 20 20 H 1.48505 * 109.46865 * 209.99588 * 18 16 14 21 21 H 1.48496 * 109.47736 * 329.99658 * 18 16 14 22 22 C 1.41179 * 107.22341 * 359.61636 * 7 6 5 23 23 N 1.30519 * 108.10810 * 0.23621 * 22 7 6 24 24 H 1.09002 * 109.47034 * 59.99822 * 1 2 3 25 25 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47343 * 299.99977 * 1 2 3 27 27 H 1.09004 * 109.46659 * 60.00272 * 3 2 1 28 28 H 1.08996 * 109.47175 * 299.99978 * 3 2 1 29 29 H 1.09004 * 109.46819 * 60.00823 * 4 3 2 30 30 H 1.08996 * 109.47505 * 300.00229 * 4 3 2 31 31 H 1.08003 * 126.31164 * 0.03694 * 6 5 4 32 32 H 1.08000 * 120.75912 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.13659 * 179.76087 * 10 9 8 34 34 H 1.08002 * 119.32528 * 180.28349 * 11 10 9 35 35 H 0.97001 * 119.99597 * 179.97438 * 17 16 14 36 36 H 1.08000 * 125.93895 * 180.24103 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0274 2.9858 0.8935 7 6 5.3276 4.2856 0.5397 8 6 6.2649 5.1901 1.2381 9 6 6.1804 5.3746 2.6204 10 6 7.0770 6.2360 3.2270 11 6 8.0388 6.8835 2.4590 12 7 8.1139 6.6997 1.1614 13 6 7.2714 5.8841 0.5187 14 6 7.3837 5.7136 -0.8741 15 1 6.7035 5.0554 -1.3941 16 6 8.3779 6.3979 -1.5856 17 7 9.2009 7.1950 -0.9562 18 14 8.5273 6.1711 -3.4338 19 1 7.6862 7.1803 -4.1260 20 1 9.9449 6.3452 -3.8408 21 1 8.0700 4.8077 -3.8039 22 6 4.5768 4.5880 -0.6170 23 7 3.8702 3.5358 -0.9286 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6437 -0.8892 30 1 3.8568 0.6439 0.8908 31 1 5.4347 2.4410 1.7324 32 1 5.4297 4.8596 3.2014 33 1 7.0333 6.4013 4.2934 34 1 8.7384 7.5510 2.9401 35 1 9.8895 7.6684 -1.4489 36 1 4.5857 5.5267 -1.1510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240631208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = 47.288959 kcal Electronic energy + Delta-G solvation = -19991.780054 eV Core-core repulsion = 16863.128024 eV Total energy + Delta-G solvation = -3128.652030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.93567 -39.75237 -38.93970 -35.48409 -34.90094 -32.99783 -31.99037 -30.79343 -29.14192 -27.44677 -27.04560 -24.52967 -23.64501 -23.12291 -21.30623 -20.96350 -19.29332 -18.23838 -17.37688 -17.26540 -16.94460 -16.34546 -16.10354 -15.97926 -15.57377 -15.15505 -14.91224 -14.35050 -14.23156 -14.06318 -13.52707 -13.47156 -13.03806 -12.85478 -12.77041 -12.68623 -12.59239 -12.31182 -12.14786 -11.80251 -11.41354 -11.19536 -10.76286 -10.26368 -10.16730 -9.68951 -9.40766 -8.73937 -8.23277 -6.37137 0.75819 1.06286 1.22018 1.40290 1.51747 1.52085 1.56179 2.12749 2.23484 2.81503 2.90978 3.66847 3.90558 3.99029 4.09017 4.16634 4.24881 4.37283 4.46058 4.47583 4.47990 4.59288 4.67017 4.79086 4.81775 4.89900 4.98986 5.01462 5.21274 5.31557 5.57836 5.72861 5.84775 6.01098 6.04866 6.23878 6.28043 6.40463 6.80791 6.85138 7.09419 8.27755 8.48977 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.004895 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.721676 B = 5719.228254 C = 6995.796458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.137 3.863 5 N -0.370 5.370 6 C 0.051 3.949 7 C -0.160 4.160 8 C -0.188 4.188 9 C -0.050 4.050 10 C -0.309 4.309 11 C 0.099 3.901 12 N -0.522 5.522 13 C 0.235 3.765 14 C -0.450 4.450 15 H 0.091 0.909 16 C 0.028 3.972 17 N -0.754 5.754 18 Si 0.973 3.027 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.263 1.263 22 C 0.056 3.944 23 N -0.326 5.326 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.200 0.800 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.277 0.723 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 -10.972 1.959 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.016 4.016 4 C 0.017 3.983 5 N -0.154 5.154 6 C -0.095 4.095 7 C -0.172 4.172 8 C -0.194 4.194 9 C -0.074 4.074 10 C -0.332 4.332 11 C -0.066 4.066 12 N -0.235 5.235 13 C 0.110 3.890 14 C -0.481 4.481 15 H 0.109 0.891 16 C -0.194 4.194 17 N -0.376 5.376 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.129 4.129 23 N -0.148 5.148 24 H 0.065 0.935 25 H 0.125 0.875 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.147 0.853 31 H 0.217 0.783 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.088 0.912 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.569 -11.228 0.595 16.132 hybrid contribution 0.152 0.537 0.391 0.681 sum -11.417 -10.691 0.985 15.672 Atomic orbital electron populations 1.22973 0.78801 1.04290 1.00848 1.87747 1.21967 1.26937 1.95658 1.22519 0.92771 0.85069 1.01291 1.21536 0.92336 0.78139 1.06322 1.48218 1.34116 1.12021 1.21035 1.23170 0.94862 0.94544 0.96931 1.19052 1.03852 0.94482 0.99817 1.18962 1.01047 1.05914 0.93482 1.21230 0.97029 0.96072 0.93084 1.21546 1.03395 1.08006 1.00263 1.22975 0.95950 0.96483 0.91174 1.68687 1.26744 1.19592 1.08497 1.18967 0.87632 0.88179 0.94218 1.19898 1.13493 1.22798 0.91894 0.89104 1.26913 0.94243 0.93429 1.04808 1.70229 1.11335 1.17465 1.38559 0.85346 0.78586 0.79774 0.76908 1.18504 1.19238 1.18672 1.24010 0.94784 0.97586 0.96492 1.76914 1.25759 0.97483 1.14660 0.93533 0.87518 0.93147 0.92676 0.92970 0.88902 0.85334 0.78348 0.85643 0.85718 0.84953 0.91196 0.80743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.16 10.70 -148.98 -1.59 -9.75 16 3 C 0.06 1.31 6.12 71.98 0.44 1.75 16 4 C 0.14 3.05 6.86 86.38 0.59 3.64 16 5 N -0.37 -11.48 3.66 -346.01 -1.27 -12.74 16 6 C 0.05 1.68 11.41 84.21 0.96 2.64 16 7 C -0.16 -6.63 5.08 -20.08 -0.10 -6.73 16 8 C -0.19 -8.90 5.83 -19.50 -0.11 -9.01 16 9 C -0.05 -2.10 9.86 22.65 0.22 -1.88 16 10 C -0.31 -13.13 10.10 22.50 0.23 -12.91 16 11 C 0.10 4.80 11.17 84.98 0.95 5.75 16 12 N -0.52 -29.23 7.85 -188.41 -1.48 -30.71 16 13 C 0.23 12.83 6.57 40.37 0.27 13.09 16 14 C -0.45 -24.25 8.47 23.34 0.20 -24.05 16 15 H 0.09 4.70 5.37 -2.91 -0.02 4.69 16 16 C 0.03 1.44 5.50 85.31 0.47 1.91 16 17 N -0.75 -41.05 11.46 21.85 0.25 -40.80 16 18 Si 0.97 39.24 29.56 68.60 2.03 41.26 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C 0.06 2.30 9.92 85.61 0.85 3.14 16 23 N -0.33 -12.11 12.34 -56.31 -0.69 -12.80 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.13 2.12 8.06 -2.39 -0.02 2.10 16 31 H 0.20 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 33 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.13 5.67 8.06 -2.91 -0.02 5.65 16 35 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 36 H 0.18 7.15 7.85 -2.91 -0.02 7.13 16 Total: -1.00 -66.89 315.44 4.53 -62.36 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 1.08 Total: 24.21 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 6.21 Total: -21.03 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.19 Total: -97.05 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.59 Total: -9.75 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.26 kcal Total: -66.89 4.53 -62.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240631208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.648 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds