Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99791 * 2 1 4 4 C 1.52999 * 109.47134 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47289 * 180.02562 * 4 3 2 6 6 C 1.34681 * 125.80255 * 125.00368 * 5 4 3 7 7 C 1.37975 * 107.37234 * 179.97438 * 6 5 4 8 8 C 1.47853 * 126.37766 * 179.97438 * 7 6 5 9 9 C 1.39353 * 120.78685 * 309.71640 * 8 7 6 10 10 N 1.31657 * 120.64928 * 179.72838 * 9 8 7 11 11 C 1.32228 * 122.50954 * 0.55153 * 10 9 8 12 12 C 1.36436 * 121.51845 * 359.73744 * 11 10 9 13 13 C 1.41138 * 119.10960 * 359.97438 * 12 11 10 14 14 C 1.40899 * 121.10404 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99718 * 154.98208 * 14 13 12 16 16 C 1.40122 * 120.00111 * 334.98875 * 14 13 12 17 17 N 1.30716 * 120.00051 * 344.00727 * 16 14 13 18 18 Si 1.86799 * 119.99922 * 164.00908 * 16 14 13 19 19 H 1.48503 * 109.47461 * 89.99530 * 18 16 14 20 20 H 1.48501 * 109.47430 * 209.99470 * 18 16 14 21 21 H 1.48503 * 109.47236 * 329.99702 * 18 16 14 22 22 C 1.41148 * 107.23876 * 359.97438 * 7 6 5 23 23 N 1.30541 * 108.11412 * 359.72198 * 22 7 6 24 24 H 1.09002 * 109.47559 * 59.99962 * 1 2 3 25 25 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47619 * 299.99844 * 1 2 3 27 27 H 1.09000 * 109.46863 * 60.00023 * 3 2 1 28 28 H 1.08989 * 109.47348 * 299.99982 * 3 2 1 29 29 H 1.09004 * 109.46839 * 59.99883 * 4 3 2 30 30 H 1.09006 * 109.46993 * 300.00517 * 4 3 2 31 31 H 1.07997 * 126.31723 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.67045 * 359.97438 * 9 8 7 33 33 H 1.07998 * 119.24233 * 179.72127 * 11 10 9 34 34 H 1.08002 * 120.44538 * 179.97438 * 12 11 10 35 35 H 0.97005 * 119.99851 * 180.02562 * 17 16 14 36 36 H 1.08001 * 125.94247 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0013 6 6 5.0237 2.9877 0.8965 7 6 5.3281 4.2852 0.5393 8 6 6.2656 5.1902 1.2382 9 6 6.1759 5.3851 2.6151 10 7 7.0154 6.1875 3.2354 11 6 7.9666 6.8501 2.5993 12 6 8.1368 6.7344 1.2505 13 6 7.2765 5.8867 0.5202 14 6 7.4142 5.7363 -0.8740 15 1 7.0626 4.8368 -1.3574 16 6 8.0073 6.7537 -1.6333 17 7 8.1475 7.9504 -1.1264 18 14 8.5975 6.4000 -3.3699 19 1 7.4967 6.6655 -4.3307 20 1 9.7539 7.2757 -3.6878 21 1 9.0112 4.9774 -3.4720 22 6 4.5779 4.5876 -0.6174 23 7 3.8755 3.5335 -0.9326 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 5.4268 2.4449 1.7387 32 1 5.4127 4.8699 3.1794 33 1 8.6238 7.4980 3.1602 34 1 8.9192 7.2841 0.7485 35 1 8.5578 8.6549 -1.6522 36 1 4.5874 5.5261 -1.1518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240631543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = 36.816983 kcal Electronic energy + Delta-G solvation = -19976.750203 eV Core-core repulsion = 16847.644074 eV Total energy + Delta-G solvation = -3129.106129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91998 -39.92213 -38.93743 -35.99109 -34.86675 -32.97258 -31.94222 -30.68613 -29.08918 -27.68208 -27.05295 -24.49563 -23.62748 -23.25075 -21.30453 -20.95573 -19.40505 -18.18018 -17.35969 -17.26961 -16.92722 -16.35753 -16.23910 -16.03756 -15.61879 -15.21381 -14.88765 -14.38060 -14.24811 -14.15945 -13.89476 -13.48521 -13.16571 -13.08206 -12.87693 -12.64193 -12.58840 -12.30813 -11.98463 -11.76660 -11.50586 -11.22607 -10.75513 -10.26379 -10.09412 -9.81889 -9.59870 -8.85170 -8.55161 -6.43873 0.70753 1.04726 1.11262 1.38999 1.49779 1.53246 1.57316 2.11002 2.18477 2.80818 2.83036 3.67253 3.79595 3.91713 4.06588 4.13472 4.17451 4.26509 4.46772 4.48240 4.53985 4.61071 4.68021 4.82025 4.85322 4.92862 4.97292 5.14294 5.16928 5.38504 5.56264 5.64781 5.81487 5.99018 6.05637 6.23556 6.29444 6.60576 6.85099 6.88034 6.92716 7.81161 8.26105 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.004869 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.865063 B = 5749.409183 C = 6995.689609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.060 3.940 4 C 0.138 3.862 5 N -0.370 5.370 6 C 0.054 3.946 7 C -0.162 4.162 8 C -0.186 4.186 9 C 0.112 3.888 10 N -0.590 5.590 11 C 0.074 3.926 12 C -0.232 4.232 13 C 0.115 3.885 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.044 3.956 17 N -0.809 5.809 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.264 1.264 21 H -0.263 1.263 22 C 0.063 3.937 23 N -0.328 5.328 24 H 0.046 0.954 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.202 0.798 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.292 0.708 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 -11.502 -0.480 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.017 4.017 4 C 0.017 3.983 5 N -0.154 5.154 6 C -0.092 4.092 7 C -0.174 4.174 8 C -0.192 4.192 9 C -0.045 4.045 10 N -0.304 5.304 11 C -0.075 4.075 12 C -0.254 4.254 13 C 0.107 3.893 14 C -0.489 4.489 15 H 0.096 0.904 16 C -0.174 4.174 17 N -0.434 5.434 18 Si 0.794 3.206 19 H -0.187 1.187 20 H -0.188 1.188 21 H -0.187 1.187 22 C -0.122 4.122 23 N -0.150 5.150 24 H 0.064 0.936 25 H 0.125 0.875 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.219 0.781 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.645 -11.950 -0.423 15.362 hybrid contribution 0.890 0.952 -1.153 1.740 sum -8.754 -10.998 -1.576 14.145 Atomic orbital electron populations 1.22970 0.78831 1.04284 1.00830 1.87744 1.21937 1.26936 1.95655 1.22526 0.92878 0.85063 1.01265 1.21537 0.92247 0.78128 1.06381 1.48238 1.34345 1.12094 1.20699 1.23214 0.94647 0.94515 0.96802 1.18986 1.04086 0.94444 0.99841 1.19113 0.99180 1.06891 0.94007 1.22494 0.96153 0.94877 0.90971 1.67357 1.08762 1.13499 1.40809 1.21963 0.95910 0.97334 0.92300 1.21884 1.03064 1.06061 0.94402 1.18114 0.88337 0.88982 0.93912 1.19610 1.34148 1.02971 0.92183 0.90435 1.26716 0.92644 0.93636 1.04432 1.69800 1.31324 1.02228 1.40086 0.85324 0.78891 0.79504 0.76842 1.18720 1.18821 1.18710 1.23926 0.94625 0.97274 0.96382 1.76938 1.25966 0.97527 1.14599 0.93563 0.87509 0.93170 0.92688 0.93049 0.88856 0.85227 0.78084 0.83587 0.84525 0.86967 0.89720 0.81295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.16 10.70 -148.98 -1.59 -9.76 16 3 C 0.06 1.30 6.12 71.98 0.44 1.74 16 4 C 0.14 3.01 6.86 86.38 0.59 3.60 16 5 N -0.37 -11.34 3.66 -346.02 -1.27 -12.60 16 6 C 0.05 1.76 11.41 84.19 0.96 2.72 16 7 C -0.16 -6.62 5.04 -20.08 -0.10 -6.72 16 8 C -0.19 -8.69 5.84 -19.47 -0.11 -8.80 16 9 C 0.11 4.98 10.90 84.99 0.93 5.91 16 10 N -0.59 -28.01 10.32 -196.20 -2.02 -30.03 16 11 C 0.07 3.54 11.08 84.21 0.93 4.47 16 12 C -0.23 -11.94 8.72 22.56 0.20 -11.74 16 13 C 0.11 5.94 5.61 -20.93 -0.12 5.82 16 14 C -0.46 -23.37 7.94 23.38 0.19 -23.18 16 15 H 0.08 3.95 6.76 -2.91 -0.02 3.93 16 16 C 0.04 2.09 5.21 85.32 0.44 2.53 16 17 N -0.81 -40.17 10.94 21.86 0.24 -39.93 16 18 Si 0.97 37.04 29.59 68.60 2.03 39.07 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C 0.06 2.59 10.46 85.60 0.90 3.48 16 23 N -0.33 -12.19 12.35 -56.32 -0.70 -12.89 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.13 2.09 8.06 -2.38 -0.02 2.07 16 31 H 0.20 5.02 8.06 -2.91 -0.02 4.99 16 32 H 0.15 5.53 8.06 -2.91 -0.02 5.50 16 33 H 0.14 5.76 8.06 -2.91 -0.02 5.73 16 34 H 0.11 5.94 6.25 -2.91 -0.02 5.92 16 35 H 0.29 13.07 8.29 -92.70 -0.77 12.31 16 36 H 0.17 7.17 8.00 -2.91 -0.02 7.14 16 Total: -1.00 -61.89 315.49 4.27 -57.63 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 1.08 Total: 27.05 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 6.49 Total: -18.54 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.75 Total: -95.45 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.59 Total: -9.76 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -61.89 4.27 -57.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240631543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.446 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds