Wall clock time and date at job start Mon Mar 30 2020 01:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39724 * 119.58985 * 321.01268 * 3 2 1 5 5 C 1.37973 * 119.20018 * 179.97438 * 4 3 2 6 6 C 1.40242 * 118.40317 * 0.02562 * 5 4 3 7 7 C 1.47670 * 120.44454 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99525 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00383 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00182 * 179.72145 * 9 7 6 11 11 C 1.53004 * 109.46783 * 180.27473 * 10 9 7 12 12 N 1.46498 * 109.46783 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00428 * 270.00096 * 12 11 10 14 14 C 1.36939 * 120.00039 * 89.99655 * 12 11 10 15 15 H 1.08003 * 119.99791 * 22.35212 * 14 12 11 16 16 C 1.38813 * 120.00289 * 202.34307 * 14 12 11 17 17 N 1.31619 * 119.99877 * 11.35090 * 16 14 12 18 18 Si 1.86801 * 120.00043 * 191.35070 * 16 14 12 19 19 H 1.48493 * 109.47311 * 60.00035 * 18 16 14 20 20 H 1.48502 * 109.47119 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46852 * 300.00208 * 18 16 14 22 22 C 1.39656 * 119.11367 * 0.27022 * 6 5 4 23 23 N 1.31487 * 120.71135 * 359.43209 * 22 6 5 24 24 H 4.51258 * 14.17552 * 359.97438 * 4 2 1 25 25 H 1.07997 * 120.39946 * 359.95889 * 4 3 2 26 26 H 1.08005 * 120.80156 * 179.97438 * 5 4 3 27 27 H 0.97004 * 119.99149 * 359.97438 * 9 7 6 28 28 H 1.08993 * 109.47192 * 300.27522 * 10 9 7 29 29 H 1.08998 * 109.47074 * 60.27602 * 10 9 7 30 30 H 1.09002 * 109.47155 * 299.99752 * 11 10 9 31 31 H 1.08998 * 109.47210 * 60.00212 * 11 10 9 32 32 H 1.09003 * 109.47414 * 94.20505 * 13 12 11 33 33 H 1.08994 * 109.47135 * 214.21405 * 13 12 11 34 34 H 1.09006 * 109.46763 * 334.21159 * 13 12 11 35 35 H 0.96997 * 119.99755 * 179.97438 * 17 16 14 36 36 H 1.07999 * 119.64396 * 179.70732 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -0.9435 0.7644 5 6 4.6761 -0.9359 0.7581 6 6 5.3343 0.0268 -0.0208 7 6 6.8097 0.0754 -0.0611 8 8 7.4620 -0.7223 0.5842 9 7 7.4331 1.0040 -0.8131 10 6 8.8967 1.0561 -0.8483 11 6 9.3445 2.1966 -1.7646 12 7 10.8082 2.2483 -1.8002 13 6 11.5360 3.0697 -0.8298 14 6 11.4960 1.5288 -2.7406 15 1 11.0050 1.2241 -3.6530 16 6 12.8245 1.1911 -2.5213 17 7 13.3588 1.3613 -1.3306 18 14 13.8538 0.4951 -3.9161 19 1 13.9125 1.4790 -5.0268 20 1 15.2281 0.2180 -3.4266 21 1 13.2389 -0.7656 -4.4037 22 6 4.5759 0.9421 -0.7539 23 7 3.2620 0.8997 -0.7269 24 1 -1.0500 -0.0003 0.0009 25 1 2.7565 -1.6702 1.3533 26 1 5.2357 -1.6535 1.3397 27 1 6.9125 1.6401 -1.3282 28 1 9.2785 1.2274 0.1582 29 1 9.2849 0.1111 -1.2282 30 1 8.9628 2.0253 -2.7711 31 1 8.9564 3.1416 -1.3847 32 1 11.8257 2.4546 0.0222 33 1 12.4284 3.4826 -1.3001 34 1 10.8953 3.8832 -0.4894 35 1 14.2869 1.1250 -1.1772 36 1 5.0740 1.6901 -1.3529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266350735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:05 Heat of formation + Delta-G solvation = 83.477347 kcal Electronic energy + Delta-G solvation = -19321.537701 eV Core-core repulsion = 16194.454917 eV Total energy + Delta-G solvation = -3127.082784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79504 -38.99865 -36.10404 -34.42578 -34.14343 -32.81205 -31.61641 -30.87211 -28.16794 -25.91771 -25.29633 -23.94001 -23.07061 -20.85802 -20.58675 -19.68646 -17.91365 -17.03491 -16.73778 -16.24669 -15.35194 -15.27560 -14.97308 -14.71178 -14.42235 -13.86566 -13.64787 -13.44528 -13.26780 -12.82843 -12.43714 -12.31115 -11.61505 -11.26243 -11.23440 -10.90281 -10.86305 -10.63122 -10.35547 -10.26140 -10.21386 -10.03590 -9.90522 -9.65157 -9.21122 -8.72635 -8.57772 -6.85149 -5.76506 -3.24049 0.05430 0.88119 2.23563 2.27174 3.12944 3.23931 3.38682 3.43485 3.44445 3.51205 3.74013 4.23661 4.46231 4.49587 4.61665 4.76388 4.80348 5.17309 5.34527 5.39458 5.59842 5.71741 5.73542 5.83427 5.93884 6.15950 6.23827 6.57520 6.66918 6.70541 6.90950 7.02839 7.34815 7.43275 7.64509 7.70033 7.78093 8.30031 8.36197 9.18715 9.80563 10.28446 11.28492 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038533 B = 0.002961 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.467269 B = 9454.741374 C = 9510.965776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.149 4.149 3 C 0.240 3.760 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.172 4.172 7 C 0.553 3.447 8 O -0.533 6.533 9 N -0.715 5.715 10 C 0.093 3.907 11 C 0.143 3.857 12 N -0.596 5.596 13 C 0.162 3.838 14 C -0.262 4.262 15 H 0.070 0.930 16 C 0.004 3.996 17 N -0.906 5.906 18 Si 0.908 3.092 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.140 3.860 23 N -0.472 5.472 24 H 0.231 0.769 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.395 0.605 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.047 0.953 34 H -0.002 1.002 35 H 0.254 0.746 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.289 -1.091 3.305 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.105 3.895 4 C -0.172 4.172 5 C -0.043 4.043 6 C -0.177 4.177 7 C 0.338 3.662 8 O -0.411 6.411 9 N -0.366 5.366 10 C -0.032 4.032 11 C 0.014 3.986 12 N -0.318 5.318 13 C 0.017 3.983 14 C -0.391 4.391 15 H 0.088 0.912 16 C -0.195 4.195 17 N -0.550 5.550 18 Si 0.738 3.262 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.020 4.020 23 N -0.180 5.180 24 H 0.247 0.753 25 H 0.164 0.836 26 H 0.172 0.828 27 H 0.229 0.771 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.065 0.935 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.982 -1.054 3.321 22.257 hybrid contribution 0.729 -0.802 -0.383 1.149 sum -21.254 -1.856 2.939 21.536 Atomic orbital electron populations 1.24961 0.95636 0.97573 0.97244 1.19293 0.91038 1.02252 1.02428 1.16731 0.88166 0.91657 0.92942 1.22029 0.94417 0.99999 1.00710 1.21720 0.93494 0.95358 0.93688 1.21314 0.95341 0.99438 1.01653 1.17980 0.86230 0.81717 0.80289 1.90813 1.66703 1.40061 1.43495 1.46149 1.09467 1.33603 1.47415 1.22640 0.75560 1.02959 1.02039 1.21014 0.86504 0.94265 0.96782 1.43923 0.99053 1.52219 1.36625 1.20859 0.93798 0.90864 0.92750 1.19177 0.94096 1.29550 0.96294 0.91227 1.25077 0.98520 0.99491 0.96407 1.70056 1.13588 1.51633 1.19735 0.86287 0.79462 0.79015 0.81472 1.20979 1.21566 1.20861 1.22986 0.88641 0.95804 0.94594 1.67737 1.09750 1.21948 1.18565 0.75274 0.83613 0.82754 0.77097 0.91848 0.90968 0.93196 0.93850 0.95187 0.93385 0.98339 0.93532 0.81582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 19.25 29.55 0.57 -0.37 16 2 C -0.15 -1.48 13.43 -38.83 -0.52 -2.00 16 3 C 0.24 2.67 6.59 -84.91 -0.56 2.11 16 4 C -0.15 -1.44 9.77 -39.12 -0.38 -1.83 16 5 C -0.02 -0.18 9.70 -38.93 -0.38 -0.56 16 6 C -0.17 -2.11 5.89 -104.76 -0.62 -2.73 16 7 C 0.55 8.57 7.77 -12.41 -0.10 8.48 16 8 O -0.53 -10.46 16.41 5.29 0.09 -10.37 16 9 N -0.72 -10.38 5.51 -61.31 -0.34 -10.72 16 10 C 0.09 1.76 6.00 -4.04 -0.02 1.73 16 11 C 0.14 2.74 5.82 -4.04 -0.02 2.71 16 12 N -0.60 -14.66 2.93 -181.12 -0.53 -15.19 16 13 C 0.16 3.93 9.01 59.85 0.54 4.47 16 14 C -0.26 -7.08 9.67 -15.06 -0.15 -7.23 16 15 H 0.07 1.83 7.84 -52.48 -0.41 1.41 16 16 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 17 N -0.91 -26.33 10.59 55.49 0.59 -25.74 16 18 Si 0.91 21.77 29.57 -169.99 -5.03 16.75 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.14 1.52 10.70 -17.17 -0.18 1.34 16 23 N -0.47 -5.69 10.26 -10.78 -0.11 -5.80 16 24 H 0.23 0.58 7.80 -54.09 -0.42 0.16 16 25 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 26 H 0.15 1.59 7.73 -52.48 -0.41 1.19 16 27 H 0.39 4.29 6.52 -40.82 -0.27 4.02 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 31 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 32 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 33 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 34 H 0.00 -0.04 7.85 -51.93 -0.41 -0.45 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.17 1.35 6.40 -52.49 -0.34 1.01 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -33.74 322.63 -6.62 -40.36 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.24 Total: -0.29 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.91 Total: 6.15 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.39 Total: -57.46 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.74 -6.62 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266350735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.839 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds