Wall clock time and date at job start Mon Mar 30 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.49307 * 6.47988 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31730 * 122.04005 * 0.02562 * 5 4 3 7 7 C 1.39603 * 120.87540 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.48845 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00015 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00244 * 0.03031 * 8 7 6 11 11 C 1.46509 * 120.00235 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46863 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.46901 * 65.00476 * 12 11 10 14 14 C 1.53005 * 109.46677 * 184.99894 * 12 11 10 15 15 N 1.46497 * 109.47548 * 304.99983 * 12 11 10 16 16 C 1.36930 * 119.99838 * 155.00141 * 15 12 11 17 17 H 1.07999 * 120.00772 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99994 * 180.02562 * 16 15 12 19 19 N 1.31623 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47388 * 120.00006 * 20 18 16 23 23 H 1.48507 * 109.46635 * 239.99765 * 20 18 16 24 24 C 1.39678 * 120.48564 * 186.45700 * 3 2 1 25 25 H 4.52733 * 13.92957 * 0.02562 * 4 2 1 26 26 H 1.08001 * 119.55985 * 359.95471 * 4 3 2 27 27 H 1.07996 * 119.56446 * 179.97438 * 6 5 4 28 28 H 0.97003 * 120.00220 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.46909 * 299.99672 * 11 10 8 30 30 H 1.09001 * 109.46872 * 59.99670 * 11 10 8 31 31 H 1.09000 * 109.46738 * 180.02562 * 14 12 11 32 32 H 1.09004 * 109.47153 * 300.00323 * 14 12 11 33 33 H 1.09000 * 109.47359 * 60.00340 * 14 12 11 34 34 H 0.96996 * 119.99567 * 335.00021 * 15 12 11 35 35 H 0.96994 * 120.00235 * 179.97438 * 19 18 16 36 36 H 1.07999 * 120.92008 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 -1.1945 -0.1358 5 7 4.6326 -1.2028 -0.1373 6 6 5.3385 -0.0977 -0.0118 7 6 4.7108 1.1412 0.1289 8 6 5.5116 2.3762 0.2697 9 8 4.9559 3.4503 0.3921 10 7 6.8578 2.3111 0.2621 11 6 7.6512 3.5348 0.4010 12 6 9.1401 3.1844 0.3617 13 1 9.3937 2.7863 -0.6207 14 6 9.9674 4.4430 0.6311 15 7 9.4325 2.1792 1.3864 16 6 10.5081 1.3446 1.2395 17 1 11.1411 1.4276 0.3684 18 6 10.7849 0.3917 2.2102 19 7 10.0138 0.2908 3.2721 20 14 12.2526 -0.7464 2.0102 21 1 12.9539 -0.4311 0.7398 22 1 13.1846 -0.5575 3.1508 23 1 11.7856 -2.1558 1.9808 24 6 3.3141 1.1970 0.1354 25 1 -1.0500 -0.0011 -0.0006 26 1 2.7763 -2.1247 -0.2407 27 1 6.4172 -0.1509 -0.0179 28 1 7.3014 1.4539 0.1647 29 1 7.4160 4.2152 -0.4174 30 1 7.4161 4.0144 1.3512 31 1 11.0281 4.1935 0.6026 32 1 9.7498 5.1910 -0.1314 33 1 9.7137 4.8412 1.6135 34 1 8.8642 2.1049 2.1689 35 1 10.2070 -0.3753 3.9503 36 1 2.7968 2.1390 0.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317263408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:39 Heat of formation + Delta-G solvation = 61.704565 kcal Electronic energy + Delta-G solvation = -19744.755834 eV Core-core repulsion = 16616.728911 eV Total energy + Delta-G solvation = -3128.026923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65933 -38.96336 -36.38488 -34.61398 -33.65588 -32.51860 -31.83605 -30.67143 -28.76391 -26.31669 -24.57288 -23.96714 -23.41521 -20.97058 -20.25253 -19.03569 -17.62651 -17.26491 -16.93994 -16.48828 -15.40969 -15.29859 -15.10354 -14.70892 -14.13646 -13.79792 -13.66991 -13.32902 -13.04184 -12.68725 -12.30835 -12.14732 -12.04648 -11.85007 -11.42120 -11.05512 -10.91397 -10.79739 -10.39669 -10.21036 -10.02204 -9.90651 -9.76224 -9.48477 -9.04024 -9.02312 -8.73443 -7.09098 -5.85226 -3.16164 0.37452 0.79827 2.40981 2.60693 3.14715 3.33946 3.38955 3.44970 3.47066 3.85589 3.90191 4.21461 4.51693 4.59743 4.69385 4.84899 5.04705 5.25036 5.39932 5.43319 5.52744 5.65239 5.82855 5.86457 5.88212 6.03426 6.13299 6.25513 6.32878 6.51071 6.66656 6.74283 6.98103 7.19886 7.63350 7.66586 7.76353 8.31656 8.36425 9.44124 9.97843 10.33470 11.36499 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018750 B = 0.004419 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.005434 B = 6335.126588 C = 7529.639211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C -0.055 4.055 4 C 0.145 3.855 5 N -0.480 5.480 6 C 0.150 3.850 7 C -0.179 4.179 8 C 0.560 3.440 9 O -0.547 6.547 10 N -0.703 5.703 11 C 0.114 3.886 12 C 0.158 3.842 13 H 0.055 0.945 14 C -0.162 4.162 15 N -0.725 5.725 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.928 5.928 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.004 3.996 25 H 0.227 0.773 26 H 0.164 0.836 27 H 0.170 0.830 28 H 0.410 0.590 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 0.612 -7.900 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C -0.057 4.057 4 C -0.013 4.013 5 N -0.187 5.187 6 C -0.007 4.007 7 C -0.184 4.184 8 C 0.345 3.655 9 O -0.426 6.426 10 N -0.354 5.354 11 C -0.010 4.010 12 C 0.048 3.952 13 H 0.073 0.927 14 C -0.223 4.223 15 N -0.367 5.367 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.022 4.022 25 H 0.243 0.757 26 H 0.181 0.819 27 H 0.187 0.813 28 H 0.248 0.752 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.986 0.487 -7.958 16.099 hybrid contribution 0.329 -0.274 0.434 0.610 sum -13.658 0.213 -7.523 15.594 Atomic orbital electron populations 1.24886 0.95681 0.98541 0.99164 1.19615 0.91462 1.01998 1.01602 1.16845 0.88106 0.94734 1.06040 1.23163 0.89803 0.96959 0.91398 1.67772 1.07408 1.30455 1.13032 1.23319 1.01075 0.86551 0.89793 1.21004 0.94643 0.95565 1.07163 1.17915 0.82511 0.87834 0.77223 1.90752 1.71549 1.29609 1.50713 1.45912 1.05136 1.12297 1.72072 1.21775 0.91662 0.85851 1.01692 1.20525 0.89809 0.90565 0.94269 0.92718 1.22361 1.01586 0.97965 1.00404 1.42497 1.33379 1.37807 1.23064 1.19254 1.03957 1.09861 1.04516 0.91008 1.24751 0.99105 0.99812 0.96890 1.69669 1.39626 1.37384 1.10931 0.86152 0.82254 0.80710 0.77236 1.20545 1.21909 1.21787 1.21772 0.92440 0.98264 0.89756 0.75663 0.81865 0.81285 0.75188 0.91459 0.91475 0.92243 0.94152 0.93163 0.78075 0.93443 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 19.25 29.55 0.57 -0.81 16 2 C -0.15 -1.58 13.27 -38.83 -0.52 -2.09 16 3 C -0.06 -0.66 5.73 -106.91 -0.61 -1.28 16 4 C 0.14 1.71 10.91 -17.07 -0.19 1.52 16 5 N -0.48 -6.67 10.33 -12.60 -0.13 -6.80 16 6 C 0.15 2.11 10.71 -17.09 -0.18 1.92 16 7 C -0.18 -2.57 5.88 -104.87 -0.62 -3.19 16 8 C 0.56 9.20 7.78 -12.32 -0.10 9.10 16 9 O -0.55 -10.34 16.41 5.32 0.09 -10.25 16 10 N -0.70 -11.32 5.34 -61.24 -0.33 -11.65 16 11 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 12 C 0.16 2.85 3.05 -67.93 -0.21 2.64 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 C -0.16 -2.72 9.49 37.16 0.35 -2.36 16 15 N -0.72 -16.46 4.56 -53.43 -0.24 -16.70 16 16 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 20 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.00 0.05 9.44 -38.46 -0.36 -0.31 16 25 H 0.23 0.92 7.80 -54.09 -0.42 0.50 16 26 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.17 2.27 6.41 -52.49 -0.34 1.93 16 28 H 0.41 6.57 6.19 -40.82 -0.25 6.32 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.39 9.53 7.80 -40.82 -0.32 9.21 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.15 1.92 7.73 -52.49 -0.41 1.51 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -30.81 325.67 -6.37 -37.17 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -4.24 Total: 12.59 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.13 Total: 0.25 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.02 Total: -61.09 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.81 -6.37 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317263408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.878 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds