Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.49307 * 6.47988 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31730 * 122.04005 * 0.02562 * 5 4 3 7 7 C 1.39603 * 120.87540 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.48845 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00015 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00244 * 0.03031 * 8 7 6 11 11 C 1.46509 * 120.00235 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46863 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.46901 * 65.00476 * 12 11 10 14 14 C 1.53005 * 109.46677 * 184.99894 * 12 11 10 15 15 N 1.46497 * 109.47548 * 304.99983 * 12 11 10 16 16 C 1.36930 * 119.99838 * 155.00141 * 15 12 11 17 17 H 1.07999 * 120.00772 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99994 * 180.02562 * 16 15 12 19 19 N 1.31623 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47388 * 120.00006 * 20 18 16 23 23 H 1.48507 * 109.46635 * 239.99765 * 20 18 16 24 24 C 1.39678 * 120.48564 * 186.45700 * 3 2 1 25 25 H 4.52733 * 13.92957 * 0.02562 * 4 2 1 26 26 H 1.08001 * 119.55985 * 359.95471 * 4 3 2 27 27 H 1.07996 * 119.56446 * 179.97438 * 6 5 4 28 28 H 0.97003 * 120.00220 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.46909 * 299.99672 * 11 10 8 30 30 H 1.09001 * 109.46872 * 59.99670 * 11 10 8 31 31 H 1.09000 * 109.46738 * 180.02562 * 14 12 11 32 32 H 1.09004 * 109.47153 * 300.00323 * 14 12 11 33 33 H 1.09000 * 109.47359 * 60.00340 * 14 12 11 34 34 H 0.96996 * 119.99567 * 335.00021 * 15 12 11 35 35 H 0.96994 * 120.00235 * 179.97438 * 19 18 16 36 36 H 1.07999 * 120.92008 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 -1.1945 -0.1358 5 7 4.6326 -1.2028 -0.1373 6 6 5.3385 -0.0977 -0.0118 7 6 4.7108 1.1412 0.1289 8 6 5.5116 2.3762 0.2697 9 8 4.9559 3.4503 0.3921 10 7 6.8578 2.3111 0.2621 11 6 7.6512 3.5348 0.4010 12 6 9.1401 3.1844 0.3617 13 1 9.3937 2.7863 -0.6207 14 6 9.9674 4.4430 0.6311 15 7 9.4325 2.1792 1.3864 16 6 10.5081 1.3446 1.2395 17 1 11.1411 1.4276 0.3684 18 6 10.7849 0.3917 2.2102 19 7 10.0138 0.2908 3.2721 20 14 12.2526 -0.7464 2.0102 21 1 12.9539 -0.4311 0.7398 22 1 13.1846 -0.5575 3.1508 23 1 11.7856 -2.1558 1.9808 24 6 3.3141 1.1970 0.1354 25 1 -1.0500 -0.0011 -0.0006 26 1 2.7763 -2.1247 -0.2407 27 1 6.4172 -0.1509 -0.0179 28 1 7.3014 1.4539 0.1647 29 1 7.4160 4.2152 -0.4174 30 1 7.4161 4.0144 1.3512 31 1 11.0281 4.1935 0.6026 32 1 9.7498 5.1910 -0.1314 33 1 9.7137 4.8412 1.6135 34 1 8.8642 2.1049 2.1689 35 1 10.2070 -0.3753 3.9503 36 1 2.7968 2.1390 0.2424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317263408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = 41.205303 kcal Electronic energy + Delta-G solvation = -19745.644748 eV Core-core repulsion = 16616.728911 eV Total energy + Delta-G solvation = -3128.915837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75972 -40.20885 -37.93032 -35.56753 -35.13819 -33.88715 -33.23312 -31.62904 -30.50809 -27.60194 -25.82636 -25.47993 -24.69346 -22.12398 -21.73531 -20.11036 -19.28899 -18.45809 -18.03897 -17.61083 -16.91592 -16.59276 -16.30210 -16.00480 -15.60443 -15.26411 -14.97826 -14.67336 -14.31639 -13.87644 -13.72608 -13.58670 -13.42693 -13.06303 -12.80614 -12.69651 -12.48764 -12.11895 -11.82785 -11.70733 -11.64907 -11.44408 -10.97714 -10.97096 -10.58243 -10.14598 -9.87791 -9.01265 -7.90139 -5.19096 -0.62888 -0.21900 1.50777 1.52603 1.57109 1.60896 1.66643 2.09214 2.15054 2.59239 2.86084 3.07956 3.27189 3.44784 3.63562 3.65691 3.72886 3.89505 3.96152 4.10066 4.33316 4.40411 4.64895 4.73640 4.78154 4.82278 4.86776 5.01848 5.08480 5.26937 5.33708 5.38974 5.58325 5.59408 6.30502 6.43052 6.49799 6.67539 7.05143 7.38375 8.10163 8.34440 9.32535 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018750 B = 0.004419 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.005434 B = 6335.126588 C = 7529.639211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.208 4.208 3 C -0.045 4.045 4 C 0.146 3.854 5 N -0.497 5.497 6 C 0.143 3.857 7 C -0.189 4.189 8 C 0.562 3.438 9 O -0.575 6.575 10 N -0.702 5.702 11 C 0.122 3.878 12 C 0.158 3.842 13 H 0.063 0.937 14 C -0.155 4.155 15 N -0.733 5.733 16 C -0.232 4.232 17 H 0.079 0.921 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.301 1.301 23 H -0.297 1.297 24 C -0.004 4.004 25 H 0.267 0.733 26 H 0.194 0.806 27 H 0.168 0.832 28 H 0.411 0.589 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.373 0.627 35 H 0.248 0.752 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 0.477 -9.245 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.209 4.209 3 C -0.047 4.047 4 C -0.011 4.011 5 N -0.204 5.204 6 C -0.014 4.014 7 C -0.194 4.194 8 C 0.348 3.652 9 O -0.457 6.457 10 N -0.352 5.352 11 C -0.002 4.002 12 C 0.050 3.950 13 H 0.081 0.919 14 C -0.216 4.216 15 N -0.374 5.374 16 C -0.363 4.363 17 H 0.097 0.903 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.229 1.229 23 H -0.224 1.224 24 C -0.030 4.030 25 H 0.283 0.717 26 H 0.211 0.789 27 H 0.185 0.815 28 H 0.249 0.751 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.351 0.379 -9.355 17.981 hybrid contribution 0.578 -0.190 0.784 0.992 sum -14.773 0.189 -8.571 17.081 Atomic orbital electron populations 1.25883 0.96353 0.95433 0.95502 1.19741 0.91697 1.04898 1.04515 1.16938 0.89277 0.94094 1.04394 1.23658 0.89187 0.98189 0.90112 1.67793 1.08562 1.30316 1.13722 1.23270 1.01146 0.86613 0.90400 1.20827 0.95003 0.94739 1.08802 1.18165 0.82479 0.88135 0.76371 1.90725 1.71976 1.30744 1.52219 1.45905 1.05218 1.12258 1.71851 1.21691 0.90459 0.86179 1.01909 1.20708 0.91089 0.90101 0.93139 0.91919 1.22238 1.00198 0.97896 1.01234 1.42634 1.32537 1.38622 1.23615 1.19594 1.03837 1.09041 1.03860 0.90278 1.25426 1.01702 1.01897 0.97192 1.69814 1.41526 1.38387 1.11927 0.85207 0.79485 0.78619 0.77224 1.18977 1.22899 1.22402 1.21865 0.92045 0.99025 0.90090 0.71654 0.78928 0.81465 0.75144 0.89430 0.92617 0.93604 0.90699 0.93886 0.79520 0.94297 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 19.25 74.32 1.43 -0.07 16 2 C -0.21 -4.07 13.27 30.02 0.40 -3.67 16 3 C -0.04 -1.05 5.73 -21.35 -0.12 -1.17 16 4 C 0.15 3.31 10.91 85.04 0.93 4.24 16 5 N -0.50 -13.72 10.33 -193.76 -2.00 -15.72 16 6 C 0.14 4.09 10.71 85.04 0.91 5.00 16 7 C -0.19 -5.54 5.88 -20.03 -0.12 -5.66 16 8 C 0.56 18.74 7.78 86.79 0.68 19.42 16 9 O -0.58 -21.97 16.41 -3.89 -0.06 -22.03 16 10 N -0.70 -22.75 5.34 -465.93 -2.49 -25.24 16 11 C 0.12 3.89 5.23 86.38 0.45 4.34 16 12 C 0.16 5.52 3.05 44.99 0.14 5.66 16 13 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 14 C -0.16 -4.94 9.49 71.98 0.68 -4.26 16 15 N -0.73 -33.29 4.56 -322.94 -1.47 -34.76 16 16 C -0.23 -11.76 9.93 84.04 0.83 -10.92 16 17 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 19 N -0.97 -56.61 13.06 21.65 0.28 -56.33 16 20 Si 0.96 44.38 29.55 68.60 2.03 46.41 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 C 0.00 -0.11 9.44 22.99 0.22 0.11 16 25 H 0.27 0.78 7.80 -4.42 -0.03 0.75 16 26 H 0.19 3.05 8.06 -2.91 -0.02 3.02 16 27 H 0.17 4.68 6.41 -2.91 -0.02 4.66 16 28 H 0.41 13.36 6.19 -92.71 -0.57 12.78 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.37 18.78 7.80 -92.71 -0.72 18.06 16 35 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.15 3.90 7.73 -2.91 -0.02 3.88 16 Total: -1.00 -66.44 325.67 2.99 -63.45 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.19 Total: 34.52 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.89 Total: 9.71 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.68 Total: -132.05 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.44 2.99 -63.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317263408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.652 kcal (2) G-P(sol) polarization free energy of solvation -66.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds