Wall clock time and date at job start Mon Mar 30 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00490 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00595 * 3 2 1 5 5 H 1.48498 * 109.46713 * 30.00082 * 3 2 1 6 6 H 1.48497 * 109.47209 * 150.00091 * 3 2 1 7 7 C 1.37883 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99394 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00211 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46908 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00063 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47290 * 324.99998 * 12 11 10 14 14 C 1.50701 * 109.46811 * 85.00489 * 12 11 10 15 15 N 1.33237 * 125.53061 * 44.69241 * 14 12 11 16 16 C 1.30834 * 109.82884 * 179.85818 * 15 14 12 17 17 N 1.34432 * 108.07770 * 0.39935 * 16 15 14 18 18 H 0.96998 * 126.81986 * 179.79346 * 17 16 15 19 19 N 1.30715 * 125.52407 * 224.99801 * 14 12 11 20 20 C 1.50704 * 109.47130 * 204.99951 * 12 11 10 21 21 C 1.38675 * 120.41697 * 140.00079 * 20 12 11 22 22 C 1.38628 * 118.42013 * 180.02562 * 21 20 12 23 23 C 1.38220 * 119.16326 * 359.97438 * 22 21 20 24 24 N 1.31857 * 120.76198 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.72627 * 359.97438 * 24 23 22 26 26 H 0.97005 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46712 * 60.00463 * 9 7 2 28 28 H 1.08998 * 109.47336 * 299.99880 * 9 7 2 29 29 H 1.09004 * 109.47200 * 60.00246 * 10 9 7 30 30 H 1.08998 * 109.47321 * 300.00253 * 10 9 7 31 31 H 1.00905 * 110.99736 * 56.05099 * 11 10 9 32 32 H 1.08004 * 125.95677 * 180.19556 * 16 15 14 33 33 H 1.07998 * 120.78542 * 359.75048 * 21 20 12 34 34 H 1.07996 * 120.41751 * 179.97438 * 22 21 20 35 35 H 1.07997 * 119.62169 * 180.02562 * 23 22 21 36 36 H 1.08007 * 119.61759 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 7 5.4903 -2.6367 -0.0009 12 6 6.0167 -4.0082 -0.0014 13 1 5.3610 -4.6492 0.5877 14 6 6.0812 -4.5209 -1.4171 15 7 6.5423 -3.8415 -2.4664 16 6 6.4593 -4.5790 -3.5439 17 7 5.9253 -5.7634 -3.1986 18 1 5.7407 -6.5116 -3.7876 19 7 5.6887 -5.7023 -1.8156 20 6 7.3989 -4.0159 0.5991 21 6 7.7907 -5.0417 1.4461 22 6 9.0714 -5.0073 1.9756 23 6 9.9095 -3.9595 1.6438 24 7 9.5030 -3.0009 0.8348 25 6 8.2919 -3.0011 0.3127 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6806 0.8889 28 1 3.8745 -0.6802 -0.8911 29 1 3.6577 -3.1507 -0.8908 30 1 3.6583 -3.1503 0.8892 31 1 5.8519 -2.1106 0.7805 32 1 6.7635 -4.2859 -4.5379 33 1 7.1126 -5.8459 1.6908 34 1 9.4099 -5.7893 2.6391 35 1 10.9088 -3.9255 2.0518 36 1 7.9946 -2.1988 -0.3464 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324239853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:49 Heat of formation + Delta-G solvation = 126.548248 kcal Electronic energy + Delta-G solvation = -20121.367173 eV Core-core repulsion = 17028.444835 eV Total energy + Delta-G solvation = -3092.922339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.05746 -40.22954 -36.73608 -33.66991 -32.44205 -32.25694 -31.59391 -31.03986 -29.41892 -26.24639 -23.95748 -23.27646 -22.89709 -22.44016 -20.36892 -19.86465 -18.27394 -17.19300 -16.78123 -16.37153 -16.01947 -15.35221 -14.92636 -14.54089 -14.39798 -14.01978 -13.72198 -13.44982 -13.12811 -13.11970 -12.59162 -12.39454 -12.06482 -11.73740 -11.32639 -11.00838 -10.27414 -10.07770 -9.95501 -9.89790 -9.78669 -9.77239 -9.66719 -9.39915 -9.20894 -9.05789 -8.51024 -8.09247 -6.01900 -4.00289 0.99581 1.21018 1.65200 2.65759 2.99655 3.36575 3.43134 3.48543 3.73356 4.11948 4.28663 4.42689 4.49369 4.76542 4.77610 4.92647 4.94424 5.08614 5.12995 5.33049 5.38159 5.50656 5.78619 5.99527 6.11042 6.18715 6.23682 6.27242 6.38585 6.66394 6.77103 6.99460 7.09378 7.38812 7.52470 7.69937 7.86781 7.95486 8.19049 8.55095 9.01855 9.60464 11.11408 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.005003 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.202042 B = 5594.919079 C = 6597.141665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.008 4.008 10 C 0.077 3.923 11 N -0.672 5.672 12 C 0.226 3.774 13 H 0.075 0.925 14 C 0.252 3.748 15 N -0.507 5.507 16 C 0.252 3.748 17 N -0.489 5.489 18 H 0.438 0.562 19 N -0.318 5.318 20 C -0.140 4.140 21 C -0.063 4.063 22 C -0.180 4.180 23 C 0.096 3.904 24 N -0.488 5.488 25 C 0.137 3.863 26 H 0.263 0.737 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.347 0.653 32 H 0.220 0.780 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.647 -12.775 -2.121 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.046 4.046 10 C -0.051 4.051 11 N -0.305 5.305 12 C 0.112 3.888 13 H 0.093 0.907 14 C -0.032 4.032 15 N -0.234 5.234 16 C -0.048 4.048 17 N -0.207 5.207 18 H 0.283 0.717 19 N -0.148 5.148 20 C -0.143 4.143 21 C -0.089 4.089 22 C -0.200 4.200 23 C -0.061 4.061 24 N -0.196 5.196 25 C -0.020 4.020 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.167 0.833 32 H 0.236 0.764 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 18.927 -12.040 -2.474 22.568 hybrid contribution -0.635 -0.658 0.276 0.955 sum 18.292 -12.698 -2.198 22.376 Atomic orbital electron populations 1.69915 1.06355 1.26909 1.51184 1.24995 0.94716 0.99217 0.94434 0.86733 0.80329 0.83344 0.78626 1.20220 1.21557 1.18832 1.21048 0.89339 0.94483 1.51047 0.91219 1.19526 0.96627 0.91465 0.96951 1.22025 0.83090 1.00505 0.99486 1.60388 1.10431 1.09571 1.50075 1.18270 0.91861 0.92620 0.86024 0.90683 1.23913 0.95132 0.87725 0.96442 1.70424 1.23748 1.31980 0.97234 1.26211 0.95017 0.82975 1.00565 1.48098 1.49482 1.15735 1.07402 0.71670 1.77943 1.25769 1.21561 0.89537 1.20745 0.96963 0.97221 0.99391 1.21523 0.96168 0.97124 0.94134 1.22067 0.94892 1.00661 1.02377 1.22819 0.99655 0.89829 0.93761 1.67827 1.16842 1.25886 1.09059 1.22910 0.87434 0.96888 0.94808 0.92750 0.96666 0.95830 0.92006 0.95563 0.83319 0.76382 0.84807 0.84873 0.82979 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.19 4.30 -27.89 -0.12 -0.31 16 10 C 0.08 1.57 5.42 -3.83 -0.02 1.55 16 11 N -0.67 -11.44 5.69 -109.19 -0.62 -12.06 16 12 C 0.23 3.39 2.78 -70.01 -0.19 3.20 16 13 H 0.08 1.11 7.69 -51.93 -0.40 0.71 16 14 C 0.25 3.96 6.72 -156.85 -1.05 2.90 16 15 N -0.51 -7.74 11.18 -11.97 -0.13 -7.87 16 16 C 0.25 2.74 13.13 -90.65 -1.19 1.55 16 17 N -0.49 -5.21 7.45 29.53 0.22 -4.99 16 18 H 0.44 2.84 8.96 -182.34 -1.63 1.21 16 19 N -0.32 -4.72 12.80 32.42 0.41 -4.31 16 20 C -0.14 -1.86 4.71 -104.48 -0.49 -2.35 16 21 C -0.06 -0.71 9.82 -39.28 -0.39 -1.09 16 22 C -0.18 -1.77 10.11 -39.44 -0.40 -2.16 16 23 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 24 N -0.49 -6.66 10.36 -13.25 -0.14 -6.80 16 25 C 0.14 1.91 10.18 -17.55 -0.18 1.73 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 28 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 29 H 0.06 1.36 8.00 -51.93 -0.42 0.95 16 30 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.35 5.53 8.00 -39.29 -0.31 5.21 16 32 H 0.22 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.17 2.51 7.73 -52.48 -0.41 2.10 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -35.97 314.86 -9.70 -45.67 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.63 Total: 3.23 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -4.66 Total: -7.64 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.52 Total: -63.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.97 -9.70 -45.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324239853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.215 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds