Wall clock time and date at job start Mon Mar 30 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00490 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00595 * 3 2 1 5 5 H 1.48498 * 109.46713 * 30.00082 * 3 2 1 6 6 H 1.48497 * 109.47209 * 150.00091 * 3 2 1 7 7 C 1.37883 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99394 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00211 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46908 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.46900 * 111.00063 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47290 * 324.99998 * 12 11 10 14 14 C 1.50701 * 109.46811 * 85.00489 * 12 11 10 15 15 N 1.33237 * 125.53061 * 44.69241 * 14 12 11 16 16 C 1.30834 * 109.82884 * 179.85818 * 15 14 12 17 17 N 1.34432 * 108.07770 * 0.39935 * 16 15 14 18 18 H 0.96998 * 126.81986 * 179.79346 * 17 16 15 19 19 N 1.30715 * 125.52407 * 224.99801 * 14 12 11 20 20 C 1.50704 * 109.47130 * 204.99951 * 12 11 10 21 21 C 1.38675 * 120.41697 * 140.00079 * 20 12 11 22 22 C 1.38628 * 118.42013 * 180.02562 * 21 20 12 23 23 C 1.38220 * 119.16326 * 359.97438 * 22 21 20 24 24 N 1.31857 * 120.76198 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.72627 * 359.97438 * 24 23 22 26 26 H 0.97005 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46712 * 60.00463 * 9 7 2 28 28 H 1.08998 * 109.47336 * 299.99880 * 9 7 2 29 29 H 1.09004 * 109.47200 * 60.00246 * 10 9 7 30 30 H 1.08998 * 109.47321 * 300.00253 * 10 9 7 31 31 H 1.00905 * 110.99736 * 56.05099 * 11 10 9 32 32 H 1.08004 * 125.95677 * 180.19556 * 16 15 14 33 33 H 1.07998 * 120.78542 * 359.75048 * 21 20 12 34 34 H 1.07996 * 120.41751 * 179.97438 * 22 21 20 35 35 H 1.07997 * 119.62169 * 180.02562 * 23 22 21 36 36 H 1.08007 * 119.61759 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 7 5.4903 -2.6367 -0.0009 12 6 6.0167 -4.0082 -0.0014 13 1 5.3610 -4.6492 0.5877 14 6 6.0812 -4.5209 -1.4171 15 7 6.5423 -3.8415 -2.4664 16 6 6.4593 -4.5790 -3.5439 17 7 5.9253 -5.7634 -3.1986 18 1 5.7407 -6.5116 -3.7876 19 7 5.6887 -5.7023 -1.8156 20 6 7.3989 -4.0159 0.5991 21 6 7.7907 -5.0417 1.4461 22 6 9.0714 -5.0073 1.9756 23 6 9.9095 -3.9595 1.6438 24 7 9.5030 -3.0009 0.8348 25 6 8.2919 -3.0011 0.3127 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6806 0.8889 28 1 3.8745 -0.6802 -0.8911 29 1 3.6577 -3.1507 -0.8908 30 1 3.6583 -3.1503 0.8892 31 1 5.8519 -2.1106 0.7805 32 1 6.7635 -4.2859 -4.5379 33 1 7.1126 -5.8459 1.6908 34 1 9.4099 -5.7893 2.6391 35 1 10.9088 -3.9255 2.0518 36 1 7.9946 -2.1988 -0.3464 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324239853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:49 Heat of formation + Delta-G solvation = 100.216638 kcal Electronic energy + Delta-G solvation = -20122.508998 eV Core-core repulsion = 17028.444835 eV Total energy + Delta-G solvation = -3094.064163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.04078 -41.14925 -38.05963 -35.44636 -33.94787 -33.30052 -32.72880 -32.03304 -31.03969 -27.62455 -25.46023 -24.45287 -23.84743 -23.37320 -22.22706 -20.93648 -19.22755 -18.89776 -18.12578 -17.43834 -17.09229 -16.49354 -16.25599 -15.86885 -15.61250 -15.36753 -15.12591 -14.63436 -14.62193 -14.26270 -13.98283 -13.80739 -13.27035 -13.05800 -12.89213 -12.70648 -12.07678 -11.84925 -11.68547 -11.43240 -11.01831 -10.95442 -10.79470 -10.76913 -10.69449 -10.35596 -9.97503 -9.49678 -8.29979 -6.34648 0.09867 0.33276 0.70205 1.39073 1.39645 1.52897 1.83058 1.98544 2.37450 2.83070 2.97668 3.05990 3.32011 3.49725 3.80552 3.92558 3.99141 4.08478 4.14478 4.27240 4.38983 4.39603 4.53865 4.62843 4.90156 4.93499 5.16329 5.21019 5.28082 5.32134 5.33885 5.46946 5.61812 5.77527 5.96086 6.22827 6.31819 6.40712 6.72820 7.04892 7.21246 7.30228 8.86759 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.005003 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.202042 B = 5594.919079 C = 6597.141665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.029 0.971 9 C 0.000 4.000 10 C 0.096 3.904 11 N -0.669 5.669 12 C 0.229 3.771 13 H 0.073 0.927 14 C 0.235 3.765 15 N -0.551 5.551 16 C 0.263 3.737 17 N -0.476 5.476 18 H 0.456 0.544 19 N -0.346 5.346 20 C -0.148 4.148 21 C -0.068 4.068 22 C -0.167 4.167 23 C 0.092 3.908 24 N -0.512 5.512 25 C 0.124 3.876 26 H 0.267 0.733 27 H 0.025 0.975 28 H 0.020 0.980 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.353 0.647 32 H 0.269 0.731 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.259 -13.073 -2.013 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.038 4.038 10 C -0.033 4.033 11 N -0.302 5.302 12 C 0.116 3.884 13 H 0.091 0.909 14 C -0.049 4.049 15 N -0.278 5.278 16 C -0.035 4.035 17 N -0.196 5.196 18 H 0.305 0.695 19 N -0.177 5.177 20 C -0.151 4.151 21 C -0.094 4.094 22 C -0.187 4.187 23 C -0.065 4.065 24 N -0.221 5.221 25 C -0.033 4.033 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.174 0.826 32 H 0.284 0.716 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.201 0.799 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 21.551 -12.379 -2.386 24.968 hybrid contribution -1.433 -0.721 0.193 1.616 sum 20.118 -13.101 -2.193 24.107 Atomic orbital electron populations 1.70062 1.08315 1.28244 1.52516 1.25970 0.95592 1.03483 0.93871 0.85611 0.79529 0.78025 0.79188 1.19411 1.20855 1.16811 1.21364 0.91852 0.93136 1.50829 0.95238 1.19387 0.93517 0.93915 0.96990 1.21599 0.85451 0.97804 0.98430 1.60211 1.07861 1.11554 1.50564 1.18228 0.92844 0.90856 0.86466 0.90922 1.23968 0.95837 0.88219 0.96839 1.70376 1.25464 1.33699 0.98302 1.27110 0.92915 0.82090 1.01367 1.48018 1.48707 1.16556 1.06300 0.69488 1.77828 1.26518 1.21643 0.91747 1.20584 0.95913 0.98192 1.00440 1.21803 0.97299 0.96863 0.93483 1.22447 0.93730 1.00861 1.01620 1.23414 1.01111 0.89240 0.92739 1.67805 1.16681 1.27422 1.10209 1.22653 0.88099 0.97030 0.95492 0.92412 0.95676 0.96113 0.94083 0.95726 0.82599 0.71559 0.83233 0.81206 0.79889 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 2 C 0.01 0.47 5.47 84.66 0.46 0.93 16 3 Si 0.95 45.52 27.47 68.60 1.88 47.40 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.24 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.53 -31.71 9.66 25.60 0.25 -31.46 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C 0.00 -0.01 4.30 29.85 0.13 0.12 16 10 C 0.10 4.01 5.42 86.30 0.47 4.48 16 11 N -0.67 -22.96 5.69 -499.36 -2.84 -25.80 16 12 C 0.23 6.93 2.78 43.42 0.12 7.05 16 13 H 0.07 2.18 7.69 -2.39 -0.02 2.16 16 14 C 0.24 7.39 6.72 138.63 0.93 8.32 16 15 N -0.55 -16.51 11.18 -191.80 -2.14 -18.66 16 16 C 0.26 5.26 13.13 180.36 2.37 7.62 16 17 N -0.48 -9.45 7.45 -60.48 -0.45 -9.90 16 18 H 0.46 5.07 8.96 -213.10 -1.91 3.16 16 19 N -0.35 -10.15 12.80 -51.33 -0.66 -10.81 16 20 C -0.15 -3.86 4.71 -19.77 -0.09 -3.95 16 21 C -0.07 -1.40 9.82 22.47 0.22 -1.18 16 22 C -0.17 -2.75 10.11 22.36 0.23 -2.52 16 23 C 0.09 1.75 11.18 84.68 0.95 2.70 16 24 N -0.51 -13.41 10.36 -195.85 -2.03 -15.44 16 25 C 0.12 3.44 10.18 84.67 0.86 4.30 16 26 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 27 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 28 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 29 H 0.04 1.87 8.00 -2.39 -0.02 1.85 16 30 H 0.02 1.02 8.06 -2.39 -0.02 1.00 16 31 H 0.35 11.24 8.00 -89.69 -0.72 10.52 16 32 H 0.27 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.15 4.65 7.73 -2.91 -0.02 4.62 16 Total: -1.00 -80.24 314.86 -0.61 -80.85 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -1.57 Total: 16.36 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 6.89 Total: -3.59 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -7.82 Total: -141.02 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -80.24 -0.61 -80.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324239853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.069 kcal (2) G-P(sol) polarization free energy of solvation -80.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds