Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47445 * 310.16259 * 3 2 1 5 5 C 1.36935 * 119.99858 * 96.35807 * 4 3 2 6 6 H 1.08005 * 119.99998 * 160.32657 * 5 4 3 7 7 C 1.38806 * 120.00223 * 340.33806 * 5 4 3 8 8 N 1.31624 * 119.99922 * 346.66474 * 7 5 4 9 9 Si 1.86801 * 120.00193 * 166.67344 * 7 5 4 10 10 H 1.48499 * 109.47071 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47045 * 119.99773 * 9 7 5 12 12 H 1.48502 * 109.47036 * 239.99523 * 9 7 5 13 13 C 1.46505 * 120.00187 * 276.36703 * 4 3 2 14 14 Si 1.86293 * 109.46904 * 264.75078 * 13 4 3 15 15 C 1.86304 * 109.47388 * 52.88744 * 14 13 4 16 16 C 1.86295 * 109.47284 * 292.88567 * 14 13 4 17 17 C 1.86807 * 109.47061 * 172.88706 * 14 13 4 18 18 C 1.38228 * 119.99799 * 90.00107 * 17 14 13 19 19 C 1.38240 * 119.99970 * 179.97438 * 18 17 14 20 20 C 1.38239 * 119.99799 * 359.97438 * 19 18 17 21 21 C 1.38239 * 119.99722 * 0.27162 * 20 19 18 22 22 C 1.38233 * 119.99752 * 269.97409 * 17 14 13 23 23 H 4.40644 * 5.51362 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.46869 * 190.16559 * 3 2 1 25 25 H 1.09001 * 109.47572 * 70.16912 * 3 2 1 26 26 H 0.96996 * 119.99853 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47147 * 144.75026 * 13 4 3 28 28 H 1.09000 * 109.46991 * 24.74832 * 13 4 3 29 29 H 1.08998 * 109.47568 * 176.86119 * 15 14 13 30 30 H 1.09000 * 109.46994 * 296.86977 * 15 14 13 31 31 H 1.09006 * 109.46867 * 56.86447 * 15 14 13 32 32 H 1.08997 * 109.47290 * 300.00389 * 16 14 13 33 33 H 1.09000 * 109.47301 * 60.00214 * 16 14 13 34 34 H 1.08999 * 109.47330 * 179.97438 * 16 14 13 35 35 H 1.08001 * 120.00400 * 359.97438 * 18 17 14 36 36 H 1.07997 * 120.00307 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.00154 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.99322 * 179.72388 * 21 20 19 39 39 H 1.08002 * 120.00184 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8899 1.0555 5 6 3.4874 -2.1785 0.7552 6 1 4.1299 -2.7324 1.4237 7 6 3.0194 -2.7729 -0.4086 8 7 2.0407 -2.2117 -1.0866 9 14 3.7783 -4.3694 -1.0125 10 1 4.8534 -4.7908 -0.0787 11 1 2.7332 -5.4227 -1.0725 12 1 4.3520 -4.1637 -2.3666 13 6 3.2461 -0.4019 2.4324 14 14 4.9868 0.1839 2.7447 15 6 5.4756 1.4083 1.4283 16 6 6.1490 -1.2714 2.7015 17 6 5.0767 1.0030 4.4212 18 6 5.3751 0.2516 5.5424 19 6 5.4422 0.8578 6.7829 20 6 5.2115 2.2156 6.9021 21 6 4.9081 2.9660 5.7815 22 6 4.8455 2.3606 4.5403 23 1 -1.0499 0.0000 0.0003 24 1 3.0088 1.0124 0.1814 25 1 3.0095 -0.3478 -0.9667 26 1 1.7135 -2.6273 -1.8997 27 1 3.0046 -1.2087 3.1244 28 1 2.5521 0.4251 2.5820 29 1 6.4728 1.7929 1.6420 30 1 5.4768 0.9154 0.4561 31 1 4.7629 2.2330 1.4165 32 1 5.8630 -1.9878 3.4716 33 1 6.0966 -1.7494 1.7232 34 1 7.1675 -0.9286 2.8837 35 1 5.5557 -0.8091 5.4492 36 1 5.6757 0.2708 7.6589 37 1 5.2643 2.6893 7.8712 38 1 4.7235 4.0260 5.8753 39 1 4.6125 2.9477 3.6643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344553274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = 71.778872 kcal Electronic energy + Delta-G solvation = -18347.403438 eV Core-core repulsion = 15686.560161 eV Total energy + Delta-G solvation = -2660.843277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.60465 -35.90636 -31.50272 -31.00081 -30.71734 -30.48302 -27.66390 -27.18537 -26.15955 -25.46458 -22.16028 -21.94006 -21.21523 -17.37155 -16.93700 -16.28110 -15.07421 -14.81709 -14.52696 -13.62044 -13.45770 -13.42164 -13.22023 -13.05680 -12.67777 -12.42718 -12.20152 -12.06591 -11.78466 -11.54075 -11.36445 -11.32327 -10.97724 -10.87244 -10.71914 -10.17225 -10.10440 -9.92829 -9.55025 -9.39217 -8.87534 -8.79935 -8.70396 -8.59385 -8.23752 -6.59078 -5.74175 -3.17563 1.50125 1.62022 3.19661 3.34483 3.36472 3.43817 3.46054 3.46472 4.10923 4.20840 4.28378 4.45085 4.56017 5.11916 5.13685 5.26490 5.43049 5.64178 5.75039 5.77056 5.92265 6.08581 6.11691 6.14912 6.18762 6.23581 6.28197 6.41508 6.61883 6.65528 6.72597 6.79172 6.91922 6.96055 7.02361 7.24773 7.34756 7.51744 7.77791 8.33343 9.15364 9.25363 9.79563 10.26447 11.27572 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.005451 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.280955 B = 5135.569845 C = 5811.506463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.089 4.089 3 C 0.262 3.738 4 N -0.565 5.565 5 C -0.259 4.259 6 H 0.082 0.918 7 C 0.000 4.000 8 N -0.895 5.895 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.289 1.289 13 C -0.112 4.112 14 Si 0.999 3.001 15 C -0.430 4.430 16 C -0.432 4.432 17 C -0.355 4.355 18 C -0.091 4.091 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.091 4.091 23 H 0.188 0.812 24 H 0.037 0.963 25 H 0.104 0.896 26 H 0.254 0.746 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 8.091 10.003 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.092 4.092 3 C 0.137 3.863 4 N -0.287 5.287 5 C -0.388 4.388 6 H 0.100 0.900 7 C -0.199 4.199 8 N -0.540 5.540 9 Si 0.731 3.269 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.216 1.216 13 C -0.286 4.286 14 Si 1.187 2.813 15 C -0.538 4.538 16 C -0.540 4.540 17 C -0.396 4.396 18 C -0.109 4.109 19 C -0.154 4.154 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.109 4.109 23 H 0.205 0.795 24 H 0.055 0.945 25 H 0.122 0.878 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.803 8.036 9.934 14.476 hybrid contribution -0.128 -0.973 -0.171 0.996 sum 6.675 7.063 9.764 13.776 Atomic orbital electron populations 1.24180 0.95382 1.07899 1.05768 1.24454 0.95443 0.93812 0.95500 1.18012 0.82625 0.90843 0.94795 1.43815 1.73527 1.10175 1.01152 1.19386 1.23868 0.89649 1.05890 0.90036 1.25017 0.96874 0.98144 0.99817 1.70048 1.25886 1.39883 1.18177 0.86239 0.78599 0.83420 0.78675 1.20181 1.21883 1.21575 1.25592 1.11764 1.01710 0.89520 0.79532 0.73495 0.66692 0.61586 1.25966 1.03811 1.10618 1.13449 1.25998 1.08735 1.13948 1.05311 1.27671 0.99749 0.98568 1.13591 1.21124 0.97551 0.99726 0.92474 1.21204 1.01545 0.95011 0.97660 1.21077 1.00389 0.94419 0.98163 1.21200 1.01383 0.99446 0.93409 1.21114 0.97780 0.95161 0.96892 0.79451 0.94538 0.87794 0.93561 0.93458 0.93879 0.92542 0.90229 0.91973 0.92064 0.89663 0.92839 0.86330 0.86864 0.86915 0.86864 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.29 19.25 29.55 0.57 -6.72 16 2 C -0.09 -2.19 11.60 -37.12 -0.43 -2.62 16 3 C 0.26 6.07 5.32 -6.83 -0.04 6.03 16 4 N -0.56 -13.04 2.01 -114.50 -0.23 -13.27 16 5 C -0.26 -6.54 9.05 -15.06 -0.14 -6.68 16 6 H 0.08 1.99 7.00 -52.48 -0.37 1.62 16 7 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 8 N -0.90 -24.94 9.12 55.49 0.51 -24.43 16 9 Si 0.90 21.04 29.57 -169.99 -5.03 16.02 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.11 -2.16 4.91 59.85 0.29 -1.86 16 14 Si 1.00 14.79 11.05 -169.99 -1.88 12.92 16 15 C -0.43 -6.22 8.04 101.05 0.81 -5.41 16 16 C -0.43 -6.62 8.24 101.05 0.83 -5.79 16 17 C -0.35 -4.96 4.59 -39.59 -0.18 -5.15 16 18 C -0.09 -1.23 9.29 -39.58 -0.37 -1.59 16 19 C -0.14 -1.69 10.05 -39.58 -0.40 -2.09 16 20 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 21 C -0.14 -1.68 10.05 -39.58 -0.40 -2.08 16 22 C -0.09 -1.22 9.29 -39.58 -0.37 -1.59 16 23 H 0.19 3.69 7.80 -54.10 -0.42 3.27 16 24 H 0.04 0.73 7.64 -51.93 -0.40 0.34 16 25 H 0.10 2.62 6.30 -51.93 -0.33 2.29 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 28 H 0.04 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 30 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 31 H 0.06 0.84 7.83 -51.93 -0.41 0.44 16 32 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 33 H 0.08 1.47 7.16 -51.93 -0.37 1.10 16 34 H 0.05 0.73 7.96 -51.93 -0.41 0.31 16 35 H 0.12 1.45 7.43 -52.49 -0.39 1.06 16 36 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.12 1.40 7.55 -52.49 -0.40 1.01 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -29.51 336.38 -7.79 -37.30 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.94 Total: 3.88 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: -0.29 Total: -37.49 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.28 Total: -37.70 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: -6.91 Total: 28.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.51 -7.79 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344553274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.083 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds