Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47445 * 310.16259 * 3 2 1 5 5 C 1.36935 * 119.99858 * 96.35807 * 4 3 2 6 6 H 1.08005 * 119.99998 * 160.32657 * 5 4 3 7 7 C 1.38806 * 120.00223 * 340.33806 * 5 4 3 8 8 N 1.31624 * 119.99922 * 346.66474 * 7 5 4 9 9 Si 1.86801 * 120.00193 * 166.67344 * 7 5 4 10 10 H 1.48499 * 109.47071 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47045 * 119.99773 * 9 7 5 12 12 H 1.48502 * 109.47036 * 239.99523 * 9 7 5 13 13 C 1.46505 * 120.00187 * 276.36703 * 4 3 2 14 14 Si 1.86293 * 109.46904 * 264.75078 * 13 4 3 15 15 C 1.86304 * 109.47388 * 52.88744 * 14 13 4 16 16 C 1.86295 * 109.47284 * 292.88567 * 14 13 4 17 17 C 1.86807 * 109.47061 * 172.88706 * 14 13 4 18 18 C 1.38228 * 119.99799 * 90.00107 * 17 14 13 19 19 C 1.38240 * 119.99970 * 179.97438 * 18 17 14 20 20 C 1.38239 * 119.99799 * 359.97438 * 19 18 17 21 21 C 1.38239 * 119.99722 * 0.27162 * 20 19 18 22 22 C 1.38233 * 119.99752 * 269.97409 * 17 14 13 23 23 H 4.40644 * 5.51362 * 179.97438 * 4 1 2 24 24 H 1.09007 * 109.46869 * 190.16559 * 3 2 1 25 25 H 1.09001 * 109.47572 * 70.16912 * 3 2 1 26 26 H 0.96996 * 119.99853 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47147 * 144.75026 * 13 4 3 28 28 H 1.09000 * 109.46991 * 24.74832 * 13 4 3 29 29 H 1.08998 * 109.47568 * 176.86119 * 15 14 13 30 30 H 1.09000 * 109.46994 * 296.86977 * 15 14 13 31 31 H 1.09006 * 109.46867 * 56.86447 * 15 14 13 32 32 H 1.08997 * 109.47290 * 300.00389 * 16 14 13 33 33 H 1.09000 * 109.47301 * 60.00214 * 16 14 13 34 34 H 1.08999 * 109.47330 * 179.97438 * 16 14 13 35 35 H 1.08001 * 120.00400 * 359.97438 * 18 17 14 36 36 H 1.07997 * 120.00307 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.00154 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.99322 * 179.72388 * 21 20 19 39 39 H 1.08002 * 120.00184 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8899 1.0555 5 6 3.4874 -2.1785 0.7552 6 1 4.1299 -2.7324 1.4237 7 6 3.0194 -2.7729 -0.4086 8 7 2.0407 -2.2117 -1.0866 9 14 3.7783 -4.3694 -1.0125 10 1 4.8534 -4.7908 -0.0787 11 1 2.7332 -5.4227 -1.0725 12 1 4.3520 -4.1637 -2.3666 13 6 3.2461 -0.4019 2.4324 14 14 4.9868 0.1839 2.7447 15 6 5.4756 1.4083 1.4283 16 6 6.1490 -1.2714 2.7015 17 6 5.0767 1.0030 4.4212 18 6 5.3751 0.2516 5.5424 19 6 5.4422 0.8578 6.7829 20 6 5.2115 2.2156 6.9021 21 6 4.9081 2.9660 5.7815 22 6 4.8455 2.3606 4.5403 23 1 -1.0499 0.0000 0.0003 24 1 3.0088 1.0124 0.1814 25 1 3.0095 -0.3478 -0.9667 26 1 1.7135 -2.6273 -1.8997 27 1 3.0046 -1.2087 3.1244 28 1 2.5521 0.4251 2.5820 29 1 6.4728 1.7929 1.6420 30 1 5.4768 0.9154 0.4561 31 1 4.7629 2.2330 1.4165 32 1 5.8630 -1.9878 3.4716 33 1 6.0966 -1.7494 1.7232 34 1 7.1675 -0.9286 2.8837 35 1 5.5557 -0.8091 5.4492 36 1 5.6757 0.2708 7.6589 37 1 5.2643 2.6893 7.8712 38 1 4.7235 4.0260 5.8753 39 1 4.6125 2.9477 3.6643 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344553274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = 60.842343 kcal Electronic energy + Delta-G solvation = -18347.877681 eV Core-core repulsion = 15686.560161 eV Total energy + Delta-G solvation = -2661.317521 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54053 -37.70953 -33.41162 -32.84593 -31.65601 -31.44208 -28.85893 -28.52837 -27.77667 -27.29516 -23.19178 -23.10365 -22.74048 -19.23901 -18.13042 -17.86749 -16.84976 -15.84661 -15.53361 -15.42074 -15.19342 -15.06980 -14.15913 -14.14457 -13.80611 -13.71440 -13.43508 -13.35882 -13.16339 -13.02700 -12.96006 -12.77605 -12.63457 -12.48772 -12.04158 -11.89317 -11.79368 -11.47286 -10.78063 -10.68838 -10.59967 -10.56015 -10.16669 -9.65085 -9.63795 -8.40492 -7.71396 -5.14969 0.51309 0.67061 1.48755 1.52239 1.60363 2.04180 2.17051 2.18370 2.43516 2.56102 2.64730 2.94714 3.12979 3.43047 4.00847 4.17974 4.22525 4.31130 4.39856 4.74323 4.78959 4.84082 4.95984 4.98685 4.99712 5.03630 5.07465 5.19016 5.32018 5.34206 5.46838 5.66833 5.69051 5.72611 5.73987 5.77055 5.80872 5.86337 6.31374 6.40461 7.21019 7.38529 7.93049 8.36707 9.28161 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.005451 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.280955 B = 5135.569845 C = 5811.506463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.125 4.125 3 C 0.264 3.736 4 N -0.581 5.581 5 C -0.250 4.250 6 H 0.087 0.913 7 C -0.056 4.056 8 N -0.925 5.925 9 Si 0.954 3.046 10 H -0.264 1.264 11 H -0.304 1.304 12 H -0.292 1.292 13 C -0.149 4.149 14 Si 1.080 2.920 15 C -0.436 4.436 16 C -0.443 4.443 17 C -0.369 4.369 18 C -0.107 4.107 19 C -0.145 4.145 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.104 4.104 23 H 0.218 0.782 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.243 0.757 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 9.387 12.012 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 C -0.128 4.128 3 C 0.139 3.861 4 N -0.303 5.303 5 C -0.380 4.380 6 H 0.104 0.896 7 C -0.250 4.250 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.188 1.188 11 H -0.232 1.232 12 H -0.219 1.219 13 C -0.317 4.317 14 Si 1.266 2.734 15 C -0.544 4.544 16 C -0.550 4.550 17 C -0.411 4.411 18 C -0.124 4.124 19 C -0.163 4.163 20 C -0.142 4.142 21 C -0.162 4.162 22 C -0.122 4.122 23 H 0.235 0.765 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.282 9.320 11.972 17.285 hybrid contribution -0.660 -1.305 -0.597 1.580 sum 7.622 8.015 11.375 15.865 Atomic orbital electron populations 1.25001 0.96479 1.07091 1.04803 1.25087 0.96574 0.94683 0.96454 1.17987 0.82189 0.92089 0.93837 1.43935 1.74162 1.09678 1.02513 1.19697 1.22475 0.90495 1.05337 0.89567 1.25633 0.97842 1.00871 1.00695 1.70222 1.27638 1.41051 1.18351 0.85376 0.77755 0.80272 0.78171 1.18800 1.23172 1.21895 1.26525 1.17001 1.00970 0.87236 0.78089 0.67005 0.65968 0.62298 1.25985 1.05405 1.10819 1.12208 1.26106 1.10449 1.14323 1.04147 1.27409 1.01602 0.99160 1.12951 1.21346 0.97827 1.00277 0.92996 1.21517 1.01148 0.95669 0.97970 1.21473 0.99038 0.94359 0.99330 1.21535 1.00819 1.00788 0.93086 1.21365 0.97728 0.95065 0.98065 0.76545 0.91721 0.90322 0.94699 0.95154 0.94313 0.90452 0.91806 0.91036 0.91737 0.91842 0.90754 0.85683 0.84802 0.84364 0.84615 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.73 19.25 74.32 1.43 -13.30 16 2 C -0.12 -6.26 11.60 31.13 0.36 -5.89 16 3 C 0.26 12.50 5.32 84.57 0.45 12.95 16 4 N -0.58 -27.29 2.01 -516.16 -1.04 -28.33 16 5 C -0.25 -12.87 9.05 84.03 0.76 -12.11 16 6 H 0.09 4.25 7.00 -2.91 -0.02 4.23 16 7 C -0.06 -3.01 5.06 84.86 0.43 -2.58 16 8 N -0.93 -53.25 9.12 21.65 0.20 -53.05 16 9 Si 0.95 44.23 29.57 68.60 2.03 46.26 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 C -0.15 -5.79 4.91 127.77 0.63 -5.16 16 14 Si 1.08 30.48 11.05 68.60 0.76 31.24 16 15 C -0.44 -11.70 8.04 113.37 0.91 -10.79 16 16 C -0.44 -12.92 8.24 113.37 0.93 -11.99 16 17 C -0.37 -9.48 4.59 22.27 0.10 -9.38 16 18 C -0.11 -2.63 9.29 22.27 0.21 -2.42 16 19 C -0.15 -3.17 10.05 22.27 0.22 -2.94 16 20 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 21 C -0.14 -3.08 10.05 22.27 0.22 -2.86 16 22 C -0.10 -2.49 9.29 22.27 0.21 -2.29 16 23 H 0.22 8.34 7.80 -4.42 -0.03 8.30 16 24 H 0.07 2.60 7.64 -2.38 -0.02 2.58 16 25 H 0.08 4.12 6.30 -2.39 -0.02 4.10 16 26 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.03 1.23 7.90 -2.39 -0.02 1.21 16 28 H 0.04 1.48 7.85 -2.39 -0.02 1.46 16 29 H 0.08 1.76 7.96 -2.39 -0.02 1.74 16 30 H 0.06 1.94 7.96 -2.39 -0.02 1.93 16 31 H 0.07 1.77 7.83 -2.38 -0.02 1.76 16 32 H 0.06 1.81 7.69 -2.39 -0.02 1.79 16 33 H 0.06 2.14 7.16 -2.39 -0.02 2.13 16 34 H 0.07 1.84 7.96 -2.39 -0.02 1.83 16 35 H 0.13 2.81 7.43 -2.91 -0.02 2.79 16 36 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.13 2.70 7.55 -2.91 -0.02 2.68 16 Total: -1.00 -64.27 336.38 10.04 -54.23 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 1.00 Total: 20.72 kcal Atomic # 6 Polarization: -78.16 SS G_CDS: 7.09 Total: -71.06 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -0.84 Total: -81.38 kcal Atomic # 14 Polarization: 74.71 SS G_CDS: 2.79 Total: 77.50 kcal Total: -64.27 10.04 -54.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344553274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.076 kcal (2) G-P(sol) polarization free energy of solvation -64.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds