Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47153 * 324.47788 * 3 2 1 5 5 C 1.36825 * 119.99605 * 84.10336 * 4 3 2 6 6 H 1.08000 * 119.99867 * 164.90467 * 5 4 3 7 7 C 1.39073 * 120.00237 * 344.90935 * 5 4 3 8 8 N 1.31346 * 119.99846 * 358.47261 * 7 5 4 9 9 Si 1.86802 * 119.99965 * 178.47203 * 7 5 4 10 10 H 1.48503 * 109.47134 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47178 * 119.99778 * 9 7 5 12 12 H 1.48500 * 109.46797 * 239.99823 * 9 7 5 13 13 C 1.34777 * 120.00133 * 264.10464 * 4 3 2 14 14 O 1.21610 * 119.99601 * 185.10596 * 13 4 3 15 15 C 1.47577 * 119.99943 * 5.10527 * 13 4 3 16 16 N 1.32936 * 119.81068 * 77.80624 * 15 13 4 17 17 C 1.31354 * 121.70513 * 179.97438 * 16 15 13 18 18 C 1.38818 * 121.13004 * 0.02562 * 17 16 15 19 19 C 1.38249 * 119.48680 * 0.27913 * 18 17 16 20 20 C 1.39539 * 118.43128 * 359.45714 * 19 18 17 21 21 N 1.38861 * 120.56886 * 180.26967 * 20 19 18 22 22 C 1.46502 * 119.99908 * 5.35658 * 21 20 19 23 23 C 1.53001 * 109.47018 * 180.02562 * 22 21 20 24 24 H 4.40648 * 5.51370 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46635 * 204.48417 * 3 2 1 26 26 H 1.08994 * 109.47277 * 84.48240 * 3 2 1 27 27 H 0.96999 * 119.99911 * 180.02562 * 8 7 5 28 28 H 1.08002 * 119.43901 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.25774 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.78212 * 179.70669 * 19 18 17 31 31 H 0.97002 * 120.00631 * 185.35218 * 21 20 19 32 32 H 1.09002 * 109.47010 * 299.99834 * 22 21 20 33 33 H 1.08998 * 109.47484 * 60.00222 * 22 21 20 34 34 H 1.08997 * 109.47374 * 299.99552 * 23 22 21 35 35 H 1.08994 * 109.47584 * 60.00098 * 23 22 21 36 36 H 1.09007 * 109.46999 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1233 0.8025 5 6 3.2487 -2.3660 0.2415 6 1 3.8266 -3.1316 0.7377 7 6 2.6203 -2.6432 -0.9678 8 7 1.8929 -1.7215 -1.5564 9 14 2.8108 -4.3266 -1.7550 10 1 3.6747 -5.1785 -0.8988 11 1 1.4754 -4.9603 -1.8976 12 1 3.4342 -4.1787 -3.0947 13 6 3.4725 -0.9332 2.0934 14 8 3.9652 -1.8424 2.7332 15 6 3.2443 0.3784 2.7303 16 7 2.0210 0.7175 3.1250 17 6 1.7758 1.8747 3.6961 18 6 2.7901 2.7975 3.9122 19 6 4.0796 2.4969 3.5147 20 6 4.3187 1.2598 2.9152 21 7 5.5980 0.9097 2.5040 22 6 6.7301 1.7902 2.8030 23 6 8.0151 1.1765 2.2434 24 1 -1.0498 -0.0004 0.0000 25 1 3.0089 0.9362 0.4259 26 1 3.0094 -0.0980 -1.0228 27 1 1.4543 -1.9149 -2.3997 28 1 0.7679 2.1123 4.0029 29 1 2.5726 3.7450 4.3827 30 1 4.8837 3.2014 3.6683 31 1 5.7422 0.0822 2.0189 32 1 6.5635 2.7648 2.3441 33 1 6.8236 1.9081 3.8825 34 1 8.1820 0.2019 2.7019 35 1 7.9215 1.0590 1.1638 36 1 8.8574 1.8319 2.4654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346962207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = 80.641351 kcal Electronic energy + Delta-G solvation = -21074.491031 eV Core-core repulsion = 17947.285268 eV Total energy + Delta-G solvation = -3127.205762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10451 -37.99501 -36.36141 -35.15715 -32.04837 -31.82381 -31.31426 -31.05772 -28.13258 -26.41980 -25.16505 -23.92203 -22.86276 -21.49353 -19.67832 -17.83230 -17.27331 -16.94792 -16.28972 -16.18395 -15.35727 -15.01567 -14.48499 -14.23553 -14.13118 -13.68011 -13.28193 -13.11098 -12.69785 -12.38572 -12.28546 -12.06172 -11.84826 -11.80151 -11.68758 -11.31010 -11.08356 -10.45275 -10.35374 -10.26114 -9.47371 -9.32665 -9.17900 -8.95861 -8.59744 -8.40383 -7.90781 -7.20291 -6.25938 -3.89513 1.50731 1.85318 3.11866 3.24395 3.30848 3.51638 3.65617 3.97770 4.21522 4.28507 4.45378 4.71699 4.93887 5.04257 5.05135 5.09783 5.31223 5.34354 5.37538 5.53403 5.61322 5.76122 5.79679 5.86364 5.98339 6.04814 6.25887 6.44156 6.47493 6.85269 6.99916 7.28599 7.44037 7.52662 7.84021 7.99842 8.40826 8.55094 9.08322 9.15048 9.32232 9.85089 10.66257 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.007108 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.395770 B = 3938.437684 C = 4919.751774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.080 4.080 3 C 0.242 3.758 4 N -0.423 5.423 5 C -0.308 4.308 6 H 0.107 0.893 7 C 0.030 3.970 8 N -0.869 5.869 9 Si 0.933 3.067 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.578 6.578 15 C 0.053 3.947 16 N -0.411 5.411 17 C 0.033 3.967 18 C -0.125 4.125 19 C -0.167 4.167 20 C 0.192 3.808 21 N -0.732 5.732 22 C 0.121 3.879 23 C -0.166 4.166 24 H 0.193 0.807 25 H 0.046 0.954 26 H 0.117 0.883 27 H 0.269 0.731 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.409 0.591 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 11.045 4.238 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.082 4.082 3 C 0.119 3.881 4 N -0.140 5.140 5 C -0.436 4.436 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.508 5.508 9 Si 0.759 3.241 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.461 6.461 15 C -0.093 4.093 16 N -0.120 5.120 17 C -0.128 4.128 18 C -0.146 4.146 19 C -0.197 4.197 20 C 0.083 3.917 21 N -0.362 5.362 22 C -0.004 4.004 23 C -0.223 4.223 24 H 0.211 0.789 25 H 0.064 0.936 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.246 0.754 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.742 10.097 4.239 12.365 hybrid contribution 0.246 -0.343 -0.517 0.667 sum 5.989 9.754 3.722 12.036 Atomic orbital electron populations 1.24018 0.95167 1.05063 1.05801 1.22667 0.93850 0.96042 0.95672 1.18376 0.85094 0.86693 0.97927 1.43615 1.53897 1.08955 1.07546 1.19809 1.30646 0.88958 1.04180 0.87480 1.25386 0.95173 0.99528 0.97225 1.69919 1.30468 1.32656 1.17721 0.85752 0.78209 0.81479 0.78623 1.19209 1.20656 1.20687 1.17363 0.85727 0.86213 0.81972 1.90641 1.49309 1.43125 1.63039 1.20941 0.88396 0.95888 1.04060 1.67624 1.20333 1.17598 1.06432 1.22457 0.99333 0.90206 1.00807 1.21929 0.93093 1.00291 0.99256 1.20930 0.97957 0.95740 1.05082 1.18727 0.86127 0.93122 0.93695 1.44567 1.03361 1.25917 1.62377 1.21291 0.85705 0.93641 0.99742 1.21970 0.96417 1.01863 1.02056 0.78937 0.93569 0.86523 0.91943 0.83315 0.85336 0.85268 0.75418 0.92323 0.92384 0.91729 0.91729 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.53 19.21 29.55 0.57 -5.96 16 2 C -0.08 -1.98 10.96 -37.12 -0.41 -2.39 16 3 C 0.24 5.81 5.09 -6.82 -0.03 5.78 16 4 N -0.42 -11.08 2.59 -119.11 -0.31 -11.39 16 5 C -0.31 -8.53 9.45 -15.01 -0.14 -8.68 16 6 H 0.11 3.07 7.24 -52.49 -0.38 2.69 16 7 C 0.03 0.78 5.34 -17.45 -0.09 0.69 16 8 N -0.87 -22.75 8.01 55.50 0.44 -22.31 16 9 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.50 12.89 5.99 -12.45 -0.07 12.82 16 14 O -0.58 -16.54 16.73 5.27 0.09 -16.45 16 15 C 0.05 1.17 4.58 -82.85 -0.38 0.79 16 16 N -0.41 -8.80 10.29 -9.68 -0.10 -8.90 16 17 C 0.03 0.55 11.17 -17.54 -0.20 0.35 16 18 C -0.13 -1.73 10.10 -39.36 -0.40 -2.13 16 19 C -0.17 -2.43 9.41 -39.09 -0.37 -2.79 16 20 C 0.19 3.45 6.65 -83.46 -0.56 2.90 16 21 N -0.73 -11.74 5.63 -58.33 -0.33 -12.07 16 22 C 0.12 1.37 5.69 -4.04 -0.02 1.35 16 23 C -0.17 -1.61 10.03 37.16 0.37 -1.23 16 24 H 0.19 3.75 7.80 -54.10 -0.42 3.33 16 25 H 0.05 1.02 6.75 -51.93 -0.35 0.67 16 26 H 0.12 2.88 6.44 -51.93 -0.33 2.55 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.47 6.87 -52.49 -0.36 1.11 16 31 H 0.41 7.34 7.35 -40.82 -0.30 7.04 16 32 H 0.06 0.59 7.78 -51.93 -0.40 0.19 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -32.62 315.02 -6.43 -39.06 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.22 Total: 10.09 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.73 Total: 1.50 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.29 Total: -54.67 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.09 Total: -16.45 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.62 -6.43 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346962207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.697 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds