Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47153 * 324.47788 * 3 2 1 5 5 C 1.36825 * 119.99605 * 84.10336 * 4 3 2 6 6 H 1.08000 * 119.99867 * 164.90467 * 5 4 3 7 7 C 1.39073 * 120.00237 * 344.90935 * 5 4 3 8 8 N 1.31346 * 119.99846 * 358.47261 * 7 5 4 9 9 Si 1.86802 * 119.99965 * 178.47203 * 7 5 4 10 10 H 1.48503 * 109.47134 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47178 * 119.99778 * 9 7 5 12 12 H 1.48500 * 109.46797 * 239.99823 * 9 7 5 13 13 C 1.34777 * 120.00133 * 264.10464 * 4 3 2 14 14 O 1.21610 * 119.99601 * 185.10596 * 13 4 3 15 15 C 1.47577 * 119.99943 * 5.10527 * 13 4 3 16 16 N 1.32936 * 119.81068 * 77.80624 * 15 13 4 17 17 C 1.31354 * 121.70513 * 179.97438 * 16 15 13 18 18 C 1.38818 * 121.13004 * 0.02562 * 17 16 15 19 19 C 1.38249 * 119.48680 * 0.27913 * 18 17 16 20 20 C 1.39539 * 118.43128 * 359.45714 * 19 18 17 21 21 N 1.38861 * 120.56886 * 180.26967 * 20 19 18 22 22 C 1.46502 * 119.99908 * 5.35658 * 21 20 19 23 23 C 1.53001 * 109.47018 * 180.02562 * 22 21 20 24 24 H 4.40648 * 5.51370 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46635 * 204.48417 * 3 2 1 26 26 H 1.08994 * 109.47277 * 84.48240 * 3 2 1 27 27 H 0.96999 * 119.99911 * 180.02562 * 8 7 5 28 28 H 1.08002 * 119.43901 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.25774 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.78212 * 179.70669 * 19 18 17 31 31 H 0.97002 * 120.00631 * 185.35218 * 21 20 19 32 32 H 1.09002 * 109.47010 * 299.99834 * 22 21 20 33 33 H 1.08998 * 109.47484 * 60.00222 * 22 21 20 34 34 H 1.08997 * 109.47374 * 299.99552 * 23 22 21 35 35 H 1.08994 * 109.47584 * 60.00098 * 23 22 21 36 36 H 1.09007 * 109.46999 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1233 0.8025 5 6 3.2487 -2.3660 0.2415 6 1 3.8266 -3.1316 0.7377 7 6 2.6203 -2.6432 -0.9678 8 7 1.8929 -1.7215 -1.5564 9 14 2.8108 -4.3266 -1.7550 10 1 3.6747 -5.1785 -0.8988 11 1 1.4754 -4.9603 -1.8976 12 1 3.4342 -4.1787 -3.0947 13 6 3.4725 -0.9332 2.0934 14 8 3.9652 -1.8424 2.7332 15 6 3.2443 0.3784 2.7303 16 7 2.0210 0.7175 3.1250 17 6 1.7758 1.8747 3.6961 18 6 2.7901 2.7975 3.9122 19 6 4.0796 2.4969 3.5147 20 6 4.3187 1.2598 2.9152 21 7 5.5980 0.9097 2.5040 22 6 6.7301 1.7902 2.8030 23 6 8.0151 1.1765 2.2434 24 1 -1.0498 -0.0004 0.0000 25 1 3.0089 0.9362 0.4259 26 1 3.0094 -0.0980 -1.0228 27 1 1.4543 -1.9149 -2.3997 28 1 0.7679 2.1123 4.0029 29 1 2.5726 3.7450 4.3827 30 1 4.8837 3.2014 3.6683 31 1 5.7422 0.0822 2.0189 32 1 6.5635 2.7648 2.3441 33 1 6.8236 1.9081 3.8825 34 1 8.1820 0.2019 2.7019 35 1 7.9215 1.0590 1.1638 36 1 8.8574 1.8319 2.4654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346962207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = 58.374756 kcal Electronic energy + Delta-G solvation = -21075.456582 eV Core-core repulsion = 17947.285268 eV Total energy + Delta-G solvation = -3128.171314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55918 -39.76512 -37.52415 -37.13170 -33.91267 -33.10371 -32.99426 -32.51948 -29.35891 -28.32031 -26.94530 -25.25172 -24.19117 -22.62092 -21.35525 -19.77651 -18.72369 -18.52332 -18.11332 -17.45879 -17.03490 -16.21875 -15.89988 -15.84694 -15.61534 -15.29187 -14.75203 -14.52079 -14.21402 -14.14715 -13.91183 -13.31816 -13.23381 -12.95943 -12.89968 -12.79455 -12.60311 -12.50976 -12.15843 -11.43115 -11.38023 -11.09574 -10.76755 -10.50085 -10.39305 -10.08894 -9.90919 -8.47272 -8.26309 -5.99156 0.21281 0.61845 1.31796 1.39363 1.53241 1.76296 2.12628 2.33336 2.41712 2.56564 2.92337 3.04587 3.11593 3.81083 3.92945 4.00156 4.06807 4.11078 4.22764 4.29881 4.44513 4.52686 4.58870 4.74753 4.90011 5.03927 5.05200 5.06720 5.22812 5.28192 5.40386 5.48642 5.71165 5.96400 6.30597 6.40028 6.48223 7.05236 7.22938 7.26928 7.34721 7.88377 8.63492 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.007108 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.395770 B = 3938.437684 C = 4919.751774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.117 4.117 3 C 0.254 3.746 4 N -0.433 5.433 5 C -0.348 4.348 6 H 0.081 0.919 7 C 0.000 4.000 8 N -0.876 5.876 9 Si 0.996 3.004 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.263 1.263 13 C 0.498 3.502 14 O -0.627 6.627 15 C 0.001 3.999 16 N -0.454 5.454 17 C 0.020 3.980 18 C -0.098 4.098 19 C -0.157 4.157 20 C 0.188 3.812 21 N -0.740 5.740 22 C 0.115 3.885 23 C -0.162 4.162 24 H 0.227 0.773 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.273 0.727 28 H 0.175 0.825 29 H 0.182 0.818 30 H 0.171 0.829 31 H 0.393 0.607 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 13.794 4.605 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.119 4.119 3 C 0.132 3.868 4 N -0.149 5.149 5 C -0.475 4.475 6 H 0.099 0.901 7 C -0.202 4.202 8 N -0.513 5.513 9 Si 0.819 3.181 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.188 1.188 13 C 0.287 3.713 14 O -0.514 6.514 15 C -0.143 4.143 16 N -0.164 5.164 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.187 4.187 20 C 0.078 3.922 21 N -0.367 5.367 22 C -0.008 4.008 23 C -0.219 4.219 24 H 0.243 0.757 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.192 0.808 29 H 0.199 0.801 30 H 0.189 0.811 31 H 0.227 0.773 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.737 12.885 4.580 14.830 hybrid contribution 0.225 -1.069 -0.559 1.227 sum 5.962 11.816 4.021 13.833 Atomic orbital electron populations 1.24864 0.96158 1.03659 1.04416 1.23026 0.94568 0.97343 0.96945 1.18213 0.85218 0.86612 0.96783 1.43765 1.53961 1.08941 1.08202 1.19760 1.32492 0.89762 1.05529 0.90066 1.26114 0.94307 1.02921 0.96861 1.70042 1.29885 1.33732 1.17679 0.84837 0.78031 0.77096 0.78100 1.19908 1.20345 1.18766 1.18066 0.84036 0.87623 0.81567 1.90563 1.51209 1.45510 1.64080 1.20303 0.90392 0.95461 1.08096 1.67417 1.20677 1.20225 1.08052 1.23045 1.01534 0.89393 1.00271 1.22467 0.91718 1.01134 0.96483 1.21440 0.99634 0.94525 1.03111 1.18899 0.85731 0.93835 0.93742 1.44908 1.04126 1.25895 1.61733 1.21618 0.84554 0.93723 1.00867 1.21970 0.96892 1.01794 1.01284 0.75671 0.92179 0.87931 0.91579 0.80786 0.80066 0.81146 0.77305 0.90091 0.91006 0.93163 0.92567 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.48 19.21 74.32 1.43 -11.05 16 2 C -0.12 -5.85 10.96 31.13 0.34 -5.51 16 3 C 0.25 12.66 5.09 84.58 0.43 13.09 16 4 N -0.43 -23.90 2.59 -648.99 -1.68 -25.59 16 5 C -0.35 -20.37 9.45 84.11 0.79 -19.57 16 6 H 0.08 5.04 7.24 -2.91 -0.02 5.02 16 7 C 0.00 0.01 5.34 84.97 0.45 0.46 16 8 N -0.88 -46.49 8.01 21.68 0.17 -46.32 16 9 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 13 C 0.50 27.23 5.99 86.71 0.52 27.75 16 14 O -0.63 -38.59 16.73 -4.06 -0.07 -38.66 16 15 C 0.00 0.04 4.58 41.92 0.19 0.23 16 16 N -0.45 -19.55 10.29 -184.54 -1.90 -21.45 16 17 C 0.02 0.63 11.17 84.90 0.95 1.58 16 18 C -0.10 -2.26 10.10 22.41 0.23 -2.03 16 19 C -0.16 -3.97 9.41 22.59 0.21 -3.76 16 20 C 0.19 6.63 6.65 38.82 0.26 6.89 16 21 N -0.74 -23.69 5.63 -338.46 -1.91 -25.60 16 22 C 0.11 2.36 5.69 86.38 0.49 2.85 16 23 C -0.16 -2.95 10.03 71.98 0.72 -2.22 16 24 H 0.23 8.33 7.80 -4.43 -0.03 8.30 16 25 H 0.06 2.76 6.75 -2.38 -0.02 2.74 16 26 H 0.10 5.28 6.44 -2.39 -0.02 5.27 16 27 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.18 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.17 2.87 6.87 -2.91 -0.02 2.85 16 31 H 0.39 14.92 7.35 -92.71 -0.68 14.24 16 32 H 0.08 1.33 7.78 -2.39 -0.02 1.31 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -76.44 315.02 4.08 -72.35 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.42 Total: 31.14 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 7.02 Total: 8.70 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -5.32 Total: -118.95 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.07 Total: -38.66 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.44 4.08 -72.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346962207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.728 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds