Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.47203 * 109.47260 * 240.00047 * 2 1 3 5 5 N 2.60806 * 109.47228 * 239.99912 * 2 1 3 6 6 C 1.52997 * 109.47049 * 119.99802 * 2 1 3 7 7 N 1.46494 * 109.47544 * 295.00089 * 6 2 1 8 8 C 1.34777 * 120.00448 * 180.02562 * 7 6 2 9 9 O 1.21587 * 119.99797 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99975 * 180.27942 * 8 7 6 11 11 C 1.39958 * 119.99866 * 174.57160 * 10 8 7 12 12 C 1.39288 * 119.94365 * 145.76640 * 11 10 8 13 13 C 1.38490 * 120.42456 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.32299 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.88296 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.21071 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99947 * 205.17480 * 16 15 14 18 18 C 1.39929 * 119.99856 * 25.16901 * 16 15 14 19 19 N 1.30833 * 120.00448 * 16.78846 * 18 16 15 20 20 Si 1.86805 * 120.00034 * 196.78464 * 18 16 15 21 21 H 1.48496 * 109.46951 * 59.99976 * 20 18 16 22 22 H 1.48496 * 109.47224 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46802 * 300.00288 * 20 18 16 24 24 C 1.38236 * 119.94642 * 325.49264 * 11 10 8 25 25 H 1.08999 * 109.47251 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47147 * 300.00115 * 1 2 3 27 27 H 1.09007 * 109.47026 * 60.00197 * 1 2 3 28 28 H 1.09004 * 109.47443 * 174.99966 * 6 2 1 29 29 H 1.09001 * 109.47211 * 55.00684 * 6 2 1 30 30 H 0.97008 * 119.99536 * 359.97438 * 7 6 2 31 31 H 0.97000 * 120.00065 * 354.56700 * 10 8 7 32 32 H 1.07990 * 119.78702 * 359.97438 * 12 11 10 33 33 H 1.08002 * 119.83898 * 180.02562 * 13 12 11 34 34 H 1.08001 * 120.06054 * 179.97438 * 14 13 12 35 35 H 0.96995 * 120.00237 * 179.97438 * 19 18 16 36 36 H 1.08005 * 120.15874 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2295 -2.1294 6 6 2.0399 -0.7212 1.2492 7 7 1.6524 0.0353 2.4424 8 6 1.9964 -0.4130 3.6659 9 8 2.6280 -1.4458 3.7795 10 7 1.6350 0.2801 4.7638 11 6 1.8920 -0.2416 6.0369 12 6 2.2098 0.6151 7.0882 13 6 2.4654 0.1097 8.3519 14 6 2.4077 -1.2464 8.5830 15 6 2.0880 -2.1241 7.5303 16 6 2.0262 -3.5181 7.7601 17 1 2.1877 -4.2074 6.9445 18 6 1.7561 -4.0043 9.0440 19 7 1.2430 -3.2112 9.9494 20 14 2.1278 -5.7858 9.4656 21 1 3.5782 -6.0457 9.2814 22 1 1.7527 -6.0488 10.8782 23 1 1.3474 -6.6790 8.5721 24 6 1.8247 -1.6058 6.2501 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.1263 -0.7995 1.2057 29 1 1.6054 -1.7198 1.2951 30 1 1.1488 0.8595 2.3517 31 1 1.1967 1.1405 4.6717 32 1 2.2570 1.6802 6.9167 33 1 2.7105 0.7826 9.1604 34 1 2.6083 -1.6360 9.5701 35 1 1.0554 -3.5484 10.8393 36 1 1.5736 -2.2704 5.4366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = 13.729033 kcal Electronic energy + Delta-G solvation = -19608.926456 eV Core-core repulsion = 16478.819158 eV Total energy + Delta-G solvation = -3130.107298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05040 -38.04693 -37.15664 -35.47424 -34.37848 -33.12540 -32.36326 -29.78436 -28.23551 -26.65203 -25.25722 -23.51685 -21.54395 -20.83610 -20.22076 -18.48737 -17.69249 -17.27159 -16.04772 -15.75855 -15.25397 -14.84820 -14.68956 -14.46793 -14.26755 -13.62553 -13.47713 -13.24713 -13.03261 -12.83968 -12.74339 -12.17599 -12.12290 -11.65839 -11.60020 -11.42236 -11.17252 -11.07996 -10.88834 -10.46394 -10.20176 -9.70907 -9.49519 -9.12702 -9.01185 -8.98041 -7.41212 -6.87060 -6.67438 -4.30233 2.30560 2.44413 2.74687 2.87345 3.00376 3.11059 3.15140 3.25886 3.63000 3.69824 3.99326 4.29973 4.47046 4.55506 4.67547 4.68823 5.24769 5.28406 5.46590 5.64196 5.72358 5.75842 6.26074 6.40341 6.43235 6.75004 6.80039 7.07408 7.12214 7.20510 7.26954 7.35860 7.70756 7.84013 8.02502 8.14119 8.27215 8.42837 8.69684 8.91584 9.00143 9.04996 10.25076 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003718 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.760550 B = 7528.113271 C = 8429.508976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.005 4.005 3 H 0.121 0.879 4 C 0.214 3.786 5 N -0.427 5.427 6 C 0.148 3.852 7 N -0.750 5.750 8 C 0.699 3.301 9 O -0.563 6.563 10 N -0.680 5.680 11 C 0.168 3.832 12 C -0.263 4.263 13 C -0.092 4.092 14 C -0.173 4.173 15 C 0.121 3.879 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.209 4.209 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.394 0.606 31 H 0.394 0.606 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 9.217 -11.781 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.139 0.861 4 C -0.105 4.105 5 N -0.102 5.102 6 C 0.021 3.979 7 N -0.409 5.409 8 C 0.400 3.600 9 O -0.438 6.438 10 N -0.326 5.326 11 C 0.076 3.924 12 C -0.285 4.285 13 C -0.111 4.111 14 C -0.193 4.193 15 C 0.118 3.882 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.231 4.231 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.229 0.771 31 H 0.228 0.772 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.281 7.410 -12.871 15.026 hybrid contribution -0.503 0.348 0.499 0.789 sum -2.784 7.758 -12.372 14.866 Atomic orbital electron populations 1.21869 0.91306 1.04003 1.03457 1.19021 0.97718 0.99530 0.86379 0.86119 1.28772 0.93475 0.93828 0.94397 1.81256 1.08524 1.08804 1.11605 1.21016 1.00766 0.95155 0.80925 1.44961 1.62491 1.28956 1.04452 1.15899 0.80186 0.83898 0.80063 1.91004 1.43564 1.24125 1.85089 1.42552 1.62887 1.22960 1.04206 1.17209 1.00767 0.93135 0.81279 1.20000 1.18115 0.96518 0.93836 1.20445 1.00470 0.95492 0.94705 1.21342 1.05806 0.91823 1.00354 1.17477 0.87202 0.93431 0.90128 1.19557 1.42571 0.92234 0.94507 0.90413 1.25889 0.92278 1.00011 0.95915 1.69819 1.30099 1.37473 1.04799 0.86373 0.80196 0.82362 0.77816 1.18813 1.20413 1.19037 1.20993 1.11544 0.92297 0.98284 0.91193 0.90236 0.91408 0.90660 0.90408 0.77140 0.77226 0.89359 0.89087 0.86370 0.90935 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.02 37.16 0.34 -0.33 16 2 C 0.00 -0.03 2.80 -93.41 -0.26 -0.29 16 3 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 4 C 0.21 1.92 14.65 -20.76 -0.30 1.61 16 5 N -0.43 -5.20 18.54 42.15 0.78 -4.42 16 6 C 0.15 1.35 5.02 -4.05 -0.02 1.33 16 7 N -0.75 -7.59 5.29 -65.23 -0.34 -7.94 16 8 C 0.70 11.61 8.29 -86.92 -0.72 10.89 16 9 O -0.56 -12.37 14.10 5.29 0.07 -12.30 16 10 N -0.68 -11.31 5.34 -14.27 -0.08 -11.39 16 11 C 0.17 3.72 6.25 -83.76 -0.52 3.19 16 12 C -0.26 -5.66 9.97 -39.10 -0.39 -6.05 16 13 C -0.09 -2.13 10.02 -39.69 -0.40 -2.52 16 14 C -0.17 -4.54 8.69 -38.84 -0.34 -4.88 16 15 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 16 C -0.46 -12.62 9.05 -37.74 -0.34 -12.97 16 17 H 0.08 2.11 7.90 -52.49 -0.41 1.70 16 18 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 19 N -0.80 -20.72 10.94 55.55 0.61 -20.11 16 20 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.21 -5.38 8.39 -38.69 -0.32 -5.71 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.27 7.18 -51.93 -0.37 -0.10 16 27 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 2.41 7.68 -40.82 -0.31 2.10 16 31 H 0.39 4.79 8.84 -40.82 -0.36 4.43 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 3.18 6.17 -52.49 -0.32 2.85 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.11 2.83 6.48 -52.48 -0.34 2.49 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -33.67 317.35 -7.39 -41.07 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.22 Total: 7.31 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -3.97 Total: -11.13 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.97 Total: -43.85 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.67 -7.39 -41.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.794 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds