Wall clock time and date at job start Mon Mar 30 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.47203 * 109.47260 * 240.00047 * 2 1 3 5 5 N 2.60806 * 109.47228 * 239.99912 * 2 1 3 6 6 C 1.52997 * 109.47049 * 119.99802 * 2 1 3 7 7 N 1.46494 * 109.47544 * 295.00089 * 6 2 1 8 8 C 1.34777 * 120.00448 * 180.02562 * 7 6 2 9 9 O 1.21587 * 119.99797 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99975 * 180.27942 * 8 7 6 11 11 C 1.39958 * 119.99866 * 174.57160 * 10 8 7 12 12 C 1.39288 * 119.94365 * 145.76640 * 11 10 8 13 13 C 1.38490 * 120.42456 * 179.97438 * 12 11 10 14 14 C 1.37683 * 120.32299 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.88296 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.21071 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99947 * 205.17480 * 16 15 14 18 18 C 1.39929 * 119.99856 * 25.16901 * 16 15 14 19 19 N 1.30833 * 120.00448 * 16.78846 * 18 16 15 20 20 Si 1.86805 * 120.00034 * 196.78464 * 18 16 15 21 21 H 1.48496 * 109.46951 * 59.99976 * 20 18 16 22 22 H 1.48496 * 109.47224 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46802 * 300.00288 * 20 18 16 24 24 C 1.38236 * 119.94642 * 325.49264 * 11 10 8 25 25 H 1.08999 * 109.47251 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47147 * 300.00115 * 1 2 3 27 27 H 1.09007 * 109.47026 * 60.00197 * 1 2 3 28 28 H 1.09004 * 109.47443 * 174.99966 * 6 2 1 29 29 H 1.09001 * 109.47211 * 55.00684 * 6 2 1 30 30 H 0.97008 * 119.99536 * 359.97438 * 7 6 2 31 31 H 0.97000 * 120.00065 * 354.56700 * 10 8 7 32 32 H 1.07990 * 119.78702 * 359.97438 * 12 11 10 33 33 H 1.08002 * 119.83898 * 180.02562 * 13 12 11 34 34 H 1.08001 * 120.06054 * 179.97438 * 14 13 12 35 35 H 0.96995 * 120.00237 * 179.97438 * 19 18 16 36 36 H 1.08005 * 120.15874 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2295 -2.1294 6 6 2.0399 -0.7212 1.2492 7 7 1.6524 0.0353 2.4424 8 6 1.9964 -0.4130 3.6659 9 8 2.6280 -1.4458 3.7795 10 7 1.6350 0.2801 4.7638 11 6 1.8920 -0.2416 6.0369 12 6 2.2098 0.6151 7.0882 13 6 2.4654 0.1097 8.3519 14 6 2.4077 -1.2464 8.5830 15 6 2.0880 -2.1241 7.5303 16 6 2.0262 -3.5181 7.7601 17 1 2.1877 -4.2074 6.9445 18 6 1.7561 -4.0043 9.0440 19 7 1.2430 -3.2112 9.9494 20 14 2.1278 -5.7858 9.4656 21 1 3.5782 -6.0457 9.2814 22 1 1.7527 -6.0488 10.8782 23 1 1.3474 -6.6790 8.5721 24 6 1.8247 -1.6058 6.2501 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.1263 -0.7995 1.2057 29 1 1.6054 -1.7198 1.2951 30 1 1.1488 0.8595 2.3517 31 1 1.1967 1.1405 4.6717 32 1 2.2570 1.6802 6.9167 33 1 2.7105 0.7826 9.1604 34 1 2.6083 -1.6360 9.5701 35 1 1.0554 -3.5484 10.8393 36 1 1.5736 -2.2704 5.4366 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:55 Heat of formation + Delta-G solvation = -9.555008 kcal Electronic energy + Delta-G solvation = -19609.936128 eV Core-core repulsion = 16478.819158 eV Total energy + Delta-G solvation = -3131.116970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40906 -39.30705 -38.43399 -36.51633 -36.03379 -34.81593 -33.33689 -31.69241 -29.82193 -27.48824 -27.14597 -24.42431 -22.99982 -22.60899 -21.67794 -19.72075 -19.44281 -18.06803 -17.55267 -17.05337 -16.65706 -16.37329 -16.07195 -15.76901 -15.48343 -14.92076 -14.64035 -14.50223 -14.23202 -13.98404 -13.86133 -13.52106 -13.44197 -12.96673 -12.88698 -12.74215 -12.64749 -12.24273 -12.15444 -11.97310 -11.93029 -11.52071 -11.20781 -10.95218 -10.73573 -10.09853 -9.33487 -8.67626 -8.53233 -6.32695 0.98201 1.08407 1.37631 1.45278 1.48590 1.54551 1.73792 1.90158 2.22812 2.26157 2.78908 2.89987 3.48285 3.68636 3.80193 3.93174 4.24443 4.53310 4.69523 4.71053 4.73689 4.94525 5.04603 5.11173 5.16441 5.18063 5.26346 5.34608 5.38264 5.45484 5.79179 5.89008 6.11760 6.17195 6.26054 6.42219 6.51065 6.74295 6.99221 7.06548 7.20339 7.68199 8.36676 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003718 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.760550 B = 7528.113271 C = 8429.508976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.013 3.987 3 H 0.163 0.837 4 C 0.240 3.760 5 N -0.487 5.487 6 C 0.146 3.854 7 N -0.716 5.716 8 C 0.695 3.305 9 O -0.621 6.621 10 N -0.667 5.667 11 C 0.178 3.822 12 C -0.249 4.249 13 C -0.091 4.091 14 C -0.202 4.202 15 C 0.089 3.911 16 C -0.506 4.506 17 H 0.061 0.939 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.236 4.236 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.420 0.580 31 H 0.421 0.579 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.289 0.711 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 11.879 -12.198 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.008 4.008 3 H 0.180 0.820 4 C -0.078 4.078 5 N -0.163 5.163 6 C 0.019 3.981 7 N -0.376 5.376 8 C 0.396 3.604 9 O -0.500 6.500 10 N -0.316 5.316 11 C 0.084 3.916 12 C -0.270 4.270 13 C -0.110 4.110 14 C -0.222 4.222 15 C 0.087 3.913 16 C -0.535 4.535 17 H 0.079 0.921 18 C -0.175 4.175 19 N -0.448 5.448 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.184 1.184 23 H -0.188 1.188 24 C -0.258 4.258 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.259 0.741 31 H 0.259 0.741 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.006 10.166 -13.345 17.044 hybrid contribution -0.315 -0.309 0.527 0.687 sum -3.321 9.857 -12.818 16.508 Atomic orbital electron populations 1.21924 0.89865 1.03670 1.05183 1.19122 0.98530 1.00418 0.82776 0.81958 1.29316 0.91843 0.92470 0.94188 1.81285 1.10581 1.10663 1.13787 1.21038 1.00194 0.94948 0.81871 1.44569 1.61106 1.29460 1.02422 1.16139 0.79724 0.83101 0.81461 1.90987 1.46152 1.26773 1.86121 1.42256 1.62934 1.23924 1.02454 1.17237 0.98662 0.91950 0.83718 1.20457 1.15284 0.98655 0.92633 1.20831 0.99053 0.94600 0.96533 1.21301 1.08060 0.93369 0.99437 1.17808 0.88158 0.93985 0.91397 1.19717 1.45649 0.92698 0.95481 0.92068 1.26643 0.91403 1.04421 0.95080 1.69850 1.30307 1.39379 1.05307 0.85323 0.79728 0.76734 0.78306 1.18843 1.18431 1.18796 1.20954 1.13582 0.94079 0.97198 0.92673 0.88411 0.89770 0.91837 0.92269 0.74062 0.74095 0.84725 0.85960 0.88009 0.90071 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.02 71.98 0.65 -0.16 16 2 C 0.01 0.11 2.80 -12.60 -0.04 0.07 16 3 H 0.16 0.11 8.14 -2.38 -0.02 0.09 16 4 C 0.24 3.94 14.65 89.44 1.31 5.25 16 5 N -0.49 -11.73 18.54 20.01 0.37 -11.36 16 6 C 0.15 2.43 5.02 86.38 0.43 2.86 16 7 N -0.72 -12.50 5.29 -478.55 -2.53 -15.03 16 8 C 0.70 22.16 8.29 179.05 1.48 23.65 16 9 O -0.62 -27.90 14.10 -3.99 -0.06 -27.96 16 10 N -0.67 -20.53 5.34 -317.32 -1.70 -22.22 16 11 C 0.18 7.68 6.25 38.10 0.24 7.91 16 12 C -0.25 -9.97 9.97 22.58 0.23 -9.74 16 13 C -0.09 -4.08 10.02 22.20 0.22 -3.86 16 14 C -0.20 -10.80 8.69 22.75 0.20 -10.61 16 15 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 16 C -0.51 -29.52 9.05 23.46 0.21 -29.31 16 17 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 18 C 0.04 2.08 5.16 85.25 0.44 2.52 16 19 N -0.82 -44.00 10.94 21.82 0.24 -43.76 16 20 Si 0.98 40.38 29.59 68.60 2.03 42.41 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 C -0.24 -12.57 8.39 22.85 0.19 -12.38 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.10 0.22 7.18 -2.39 -0.02 0.20 16 27 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.42 3.14 7.68 -92.70 -0.71 2.43 16 31 H 0.42 8.37 8.84 -92.71 -0.82 7.55 16 32 H 0.13 4.17 8.06 -2.92 -0.02 4.14 16 33 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 34 H 0.10 5.68 6.17 -2.91 -0.02 5.66 16 35 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 36 H 0.08 4.75 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -80.03 317.35 3.41 -76.62 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.40 Total: 20.09 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 5.45 Total: -18.79 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -3.62 Total: -92.38 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.06 Total: -27.96 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -80.03 3.41 -76.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.065 kcal (2) G-P(sol) polarization free energy of solvation -80.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds