Wall clock time and date at job start Mon Mar 30 2020 01:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99702 * 2 1 4 4 N 1.46504 * 109.46875 * 136.18697 * 3 2 1 5 5 C 1.46502 * 120.00063 * 81.50222 * 4 3 2 6 6 C 1.50701 * 109.47060 * 90.00223 * 5 4 3 7 7 H 1.08001 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00296 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99730 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46927 * 60.00297 * 10 8 6 12 12 H 1.48501 * 109.46775 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46808 * 299.99926 * 10 8 6 14 14 C 1.34777 * 119.99828 * 261.50768 * 4 3 2 15 15 O 1.21645 * 119.99825 * 182.81794 * 14 4 3 16 16 C 1.47056 * 120.00247 * 2.81419 * 14 4 3 17 17 C 1.38004 * 125.91430 * 16.92158 * 16 14 4 18 18 C 1.39359 * 107.48136 * 179.97438 * 17 16 14 19 19 C 1.38076 * 107.51867 * 0.02562 * 18 17 16 20 20 C 1.43200 * 125.89481 * 179.97438 * 19 18 17 21 21 N 7.75773 * 73.79362 * 46.98503 * 2 1 3 22 22 N 1.36726 * 108.20797 * 359.73649 * 19 18 17 23 23 C 1.46496 * 125.68784 * 180.29577 * 22 19 18 24 24 H 1.08003 * 119.99632 * 7.74241 * 1 2 3 25 25 H 1.07998 * 120.00515 * 187.74630 * 1 2 3 26 26 H 1.07993 * 119.99644 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47800 * 16.18914 * 3 2 1 28 28 H 1.08999 * 109.46777 * 256.17974 * 3 2 1 29 29 H 1.08998 * 109.46946 * 209.99945 * 5 4 3 30 30 H 1.08999 * 109.47018 * 330.00020 * 5 4 3 31 31 H 0.97001 * 120.00502 * 180.02562 * 9 8 6 32 32 H 1.07997 * 126.26310 * 359.97171 * 17 16 14 33 33 H 1.08000 * 126.23810 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47166 * 274.16639 * 23 22 19 35 35 H 1.09004 * 109.47041 * 34.16610 * 23 22 19 36 36 H 1.09001 * 109.47320 * 154.16507 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.1708 1.2297 0.9563 5 6 4.4275 0.5820 0.5722 6 6 5.3540 1.6036 -0.0352 7 1 5.0384 2.6326 -0.1256 8 6 6.6049 1.2251 -0.4745 9 7 6.9893 -0.0277 -0.3638 10 14 7.7530 2.4914 -1.2280 11 1 8.0298 3.5610 -0.2358 12 1 9.0269 1.8348 -1.6172 13 1 7.1148 3.0846 -2.4305 14 6 3.0333 1.7560 2.1894 15 8 3.9697 1.7391 2.9657 16 6 1.7515 2.3509 2.5962 17 6 0.5352 2.1568 1.9737 18 6 -0.4160 2.8967 2.6736 19 6 0.2340 3.5321 3.7130 20 6 -0.3734 4.3962 4.6799 21 7 -0.8551 5.0819 5.4469 22 7 1.5567 3.1896 3.6627 23 6 2.5934 3.6451 4.5922 24 1 -0.5400 0.9268 -0.1260 25 1 -0.5401 -0.9267 0.1261 26 1 1.8500 -0.9353 0.0004 27 1 1.3905 2.1133 0.2865 28 1 2.4577 1.4970 -0.9979 29 1 4.8959 0.1459 1.4545 30 1 4.2240 -0.2026 -0.1565 31 1 7.8695 -0.2941 -0.6725 32 1 0.3536 1.5438 1.1034 33 1 -1.4695 2.9614 2.4447 34 1 2.9857 4.6051 4.2568 35 1 2.1650 3.7556 5.5884 36 1 3.4007 2.9134 4.6230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569599574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:01 Heat of formation + Delta-G solvation = 99.821249 kcal Electronic energy + Delta-G solvation = -20599.958833 eV Core-core repulsion = 17473.584773 eV Total energy + Delta-G solvation = -3126.374059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.59639 -38.77022 -36.54966 -36.29325 -33.53047 -32.80650 -32.23306 -30.07386 -27.51755 -26.67532 -25.74477 -24.02603 -21.93569 -21.56564 -19.74302 -19.03460 -18.10426 -16.60090 -16.51165 -15.77554 -15.66849 -14.92159 -14.55389 -14.22229 -14.17669 -13.78063 -13.55011 -13.41983 -13.21066 -12.99581 -12.84536 -12.56490 -12.35727 -12.05338 -11.96876 -11.63637 -11.20292 -11.05327 -10.70226 -10.57011 -10.22047 -9.75637 -9.35864 -9.15471 -8.80740 -8.49278 -8.26657 -7.83429 -6.10856 -4.15918 1.08475 2.04046 2.23979 2.34351 2.88460 3.28601 3.33306 3.33394 3.35802 3.69999 3.76913 3.87139 4.39581 4.76446 4.85730 5.12212 5.20774 5.21503 5.24142 5.31419 5.32922 5.57244 5.67042 5.91071 5.93683 6.00750 6.18369 6.53188 6.70198 6.74409 6.81752 6.86606 6.99798 7.28377 7.30816 7.38621 7.84487 8.13503 8.20064 8.73496 8.90962 9.49257 10.97256 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.005332 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.911092 B = 5250.357580 C = 6162.331584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.101 3.899 4 N -0.571 5.571 5 C 0.248 3.752 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.572 3.428 15 O -0.539 6.539 16 C 0.020 3.980 17 C -0.194 4.194 18 C -0.124 4.124 19 C 0.058 3.942 20 C 0.287 3.713 21 N -0.415 5.415 22 N -0.386 5.386 23 C 0.052 3.948 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.188 0.812 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.886 2.539 2.176 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.172 4.172 3 C -0.022 4.022 4 N -0.300 5.300 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.358 3.642 15 O -0.418 6.418 16 C -0.100 4.100 17 C -0.218 4.218 18 C -0.152 4.152 19 C -0.059 4.059 20 C -0.028 4.028 21 N -0.092 5.092 22 N -0.058 5.058 23 C -0.088 4.088 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.205 0.795 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.610 3.576 3.982 14.624 hybrid contribution 0.911 0.392 -0.698 1.213 sum -12.699 3.968 3.284 13.703 Atomic orbital electron populations 1.23734 0.95697 1.02119 1.02748 1.23539 0.96071 0.99963 0.97674 1.21374 0.89642 0.95643 0.95533 1.47905 1.15963 1.55655 1.10477 1.19393 0.78145 0.92796 0.96754 1.21357 0.99720 0.95443 1.40276 0.92347 1.24909 0.97722 0.95438 0.95821 1.69911 1.20431 1.15977 1.46917 0.86556 0.79945 0.81399 0.79515 1.20213 1.21161 1.20171 1.16980 0.84794 0.79436 0.82944 1.90742 1.40546 1.58695 1.51790 1.20780 0.96957 1.00224 0.92082 1.22773 0.90528 1.04948 1.03530 1.21201 0.99718 0.99614 0.94689 1.15663 0.84047 1.06292 0.99861 1.24351 0.94140 0.92242 0.92093 1.81279 1.07705 1.10674 1.09548 1.43810 1.06257 1.33814 1.21945 1.22542 0.91520 1.03301 0.91466 0.87844 0.88115 0.86628 0.87754 0.88891 0.93587 0.94375 0.92569 0.79532 0.82918 0.90073 0.90212 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.01 12.69 29.01 0.37 -1.64 16 2 C -0.15 -1.95 9.41 -36.03 -0.34 -2.29 16 3 C 0.10 1.51 5.37 -5.19 -0.03 1.48 16 4 N -0.57 -11.25 2.45 -177.84 -0.44 -11.68 16 5 C 0.25 6.03 5.14 -5.19 -0.03 6.01 16 6 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 10 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.57 11.35 7.60 -12.68 -0.10 11.25 16 15 O -0.54 -12.47 14.23 5.24 0.07 -12.40 16 16 C 0.02 0.31 6.60 -82.04 -0.54 -0.23 16 17 C -0.19 -2.45 8.44 -39.25 -0.33 -2.78 16 18 C -0.12 -1.37 10.80 -39.22 -0.42 -1.79 16 19 C 0.06 0.72 6.72 -83.82 -0.56 0.16 16 20 C 0.29 3.63 15.21 -22.47 -0.34 3.29 16 21 N -0.41 -5.80 18.54 41.84 0.78 -5.02 16 22 N -0.39 -5.50 3.18 -117.20 -0.37 -5.87 16 23 C 0.05 0.67 10.59 59.84 0.63 1.30 16 24 H 0.10 0.83 6.94 -52.48 -0.36 0.46 16 25 H 0.10 0.87 8.06 -52.49 -0.42 0.44 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.10 1.35 4.18 -51.93 -0.22 1.13 16 28 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 29 H 0.05 1.27 7.46 -51.93 -0.39 0.88 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.19 2.08 1.09 -52.49 -0.06 2.03 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 36 H 0.12 1.83 5.89 -51.93 -0.31 1.52 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -31.00 314.03 -5.44 -36.44 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.82 Total: 0.61 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.11 Total: 1.86 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.70 Total: -47.32 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.00 -5.44 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569599574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.259 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds