Wall clock time and date at job start Mon Mar 30 2020 01:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99702 * 2 1 4 4 N 1.46504 * 109.46875 * 136.18697 * 3 2 1 5 5 C 1.46502 * 120.00063 * 81.50222 * 4 3 2 6 6 C 1.50701 * 109.47060 * 90.00223 * 5 4 3 7 7 H 1.08001 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00296 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99730 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46927 * 60.00297 * 10 8 6 12 12 H 1.48501 * 109.46775 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46808 * 299.99926 * 10 8 6 14 14 C 1.34777 * 119.99828 * 261.50768 * 4 3 2 15 15 O 1.21645 * 119.99825 * 182.81794 * 14 4 3 16 16 C 1.47056 * 120.00247 * 2.81419 * 14 4 3 17 17 C 1.38004 * 125.91430 * 16.92158 * 16 14 4 18 18 C 1.39359 * 107.48136 * 179.97438 * 17 16 14 19 19 C 1.38076 * 107.51867 * 0.02562 * 18 17 16 20 20 C 1.43200 * 125.89481 * 179.97438 * 19 18 17 21 21 N 7.75773 * 73.79362 * 46.98503 * 2 1 3 22 22 N 1.36726 * 108.20797 * 359.73649 * 19 18 17 23 23 C 1.46496 * 125.68784 * 180.29577 * 22 19 18 24 24 H 1.08003 * 119.99632 * 7.74241 * 1 2 3 25 25 H 1.07998 * 120.00515 * 187.74630 * 1 2 3 26 26 H 1.07993 * 119.99644 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47800 * 16.18914 * 3 2 1 28 28 H 1.08999 * 109.46777 * 256.17974 * 3 2 1 29 29 H 1.08998 * 109.46946 * 209.99945 * 5 4 3 30 30 H 1.08999 * 109.47018 * 330.00020 * 5 4 3 31 31 H 0.97001 * 120.00502 * 180.02562 * 9 8 6 32 32 H 1.07997 * 126.26310 * 359.97171 * 17 16 14 33 33 H 1.08000 * 126.23810 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47166 * 274.16639 * 23 22 19 35 35 H 1.09004 * 109.47041 * 34.16610 * 23 22 19 36 36 H 1.09001 * 109.47320 * 154.16507 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.1708 1.2297 0.9563 5 6 4.4275 0.5820 0.5722 6 6 5.3540 1.6036 -0.0352 7 1 5.0384 2.6326 -0.1256 8 6 6.6049 1.2251 -0.4745 9 7 6.9893 -0.0277 -0.3638 10 14 7.7530 2.4914 -1.2280 11 1 8.0298 3.5610 -0.2358 12 1 9.0269 1.8348 -1.6172 13 1 7.1148 3.0846 -2.4305 14 6 3.0333 1.7560 2.1894 15 8 3.9697 1.7391 2.9657 16 6 1.7515 2.3509 2.5962 17 6 0.5352 2.1568 1.9737 18 6 -0.4160 2.8967 2.6736 19 6 0.2340 3.5321 3.7130 20 6 -0.3734 4.3962 4.6799 21 7 -0.8551 5.0819 5.4469 22 7 1.5567 3.1896 3.6627 23 6 2.5934 3.6451 4.5922 24 1 -0.5400 0.9268 -0.1260 25 1 -0.5401 -0.9267 0.1261 26 1 1.8500 -0.9353 0.0004 27 1 1.3905 2.1133 0.2865 28 1 2.4577 1.4970 -0.9979 29 1 4.8959 0.1459 1.4545 30 1 4.2240 -0.2026 -0.1565 31 1 7.8695 -0.2941 -0.6725 32 1 0.3536 1.5438 1.1034 33 1 -1.4695 2.9614 2.4447 34 1 2.9857 4.6051 4.2568 35 1 2.1650 3.7556 5.5884 36 1 3.4007 2.9134 4.6230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569599574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:01 Heat of formation + Delta-G solvation = 81.352459 kcal Electronic energy + Delta-G solvation = -20600.759700 eV Core-core repulsion = 17473.584773 eV Total energy + Delta-G solvation = -3127.174926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.71124 -40.22925 -37.67694 -37.58645 -35.28754 -33.89768 -33.77494 -31.33973 -29.26478 -27.71825 -26.97719 -25.71960 -23.46305 -22.57899 -20.75949 -20.36181 -19.21435 -18.55585 -17.87898 -17.29663 -16.84606 -16.50185 -15.90177 -15.60986 -15.41452 -15.05470 -14.59535 -14.45477 -14.30716 -14.24605 -14.16166 -13.96872 -13.60517 -13.38923 -13.20619 -13.09723 -12.89154 -12.66975 -12.42004 -12.16540 -11.78574 -11.62772 -10.85125 -10.61770 -10.15066 -9.81684 -9.58719 -9.27443 -8.20451 -6.34493 -0.02491 0.97499 1.17581 1.38792 1.40844 1.42723 1.50305 1.84041 2.27859 2.35193 2.40732 2.50154 2.73973 3.09969 3.58262 3.78262 4.11746 4.18160 4.21614 4.25097 4.38260 4.58732 4.65107 4.83493 4.90472 5.02258 5.08071 5.20512 5.28626 5.52620 5.60510 5.75103 5.78930 5.82035 5.86914 5.87349 6.06756 6.27637 6.65540 6.74362 7.22790 7.39121 8.86511 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.005332 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.911092 B = 5250.357580 C = 6162.331584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.191 4.191 3 C 0.101 3.899 4 N -0.577 5.577 5 C 0.265 3.735 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.012 3.988 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.279 1.279 12 H -0.280 1.280 13 H -0.260 1.260 14 C 0.564 3.436 15 O -0.589 6.589 16 C -0.014 4.014 17 C -0.172 4.172 18 C -0.103 4.103 19 C 0.064 3.936 20 C 0.305 3.695 21 N -0.433 5.433 22 N -0.395 5.395 23 C 0.052 3.948 24 H 0.134 0.866 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.082 0.918 29 H 0.002 0.998 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.203 0.797 33 H 0.198 0.802 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 3.884 1.384 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C -0.020 4.020 4 N -0.305 5.305 5 C 0.144 3.856 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.205 1.205 12 H -0.205 1.205 13 H -0.185 1.185 14 C 0.353 3.647 15 O -0.472 6.472 16 C -0.133 4.133 17 C -0.196 4.196 18 C -0.131 4.131 19 C -0.052 4.052 20 C -0.010 4.010 21 N -0.111 5.111 22 N -0.068 5.068 23 C -0.089 4.089 24 H 0.152 0.848 25 H 0.138 0.862 26 H 0.112 0.888 27 H 0.148 0.852 28 H 0.100 0.900 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.219 0.781 33 H 0.215 0.785 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.787 4.923 3.165 17.778 hybrid contribution 1.758 -0.041 -0.398 1.803 sum -15.030 4.882 2.766 16.043 Atomic orbital electron populations 1.24091 0.94251 1.04362 0.97367 1.23216 0.97170 0.97939 1.02681 1.21614 0.88625 0.97922 0.93809 1.47829 1.15745 1.55246 1.11678 1.18807 0.80094 0.92422 0.94268 1.21647 1.00601 0.95591 1.40278 0.92775 1.25778 0.99330 0.97378 0.96248 1.70031 1.20947 1.17810 1.47831 0.85524 0.77979 0.78710 0.78944 1.20450 1.20481 1.18498 1.17571 0.86009 0.78799 0.82311 1.90707 1.42773 1.60586 1.53114 1.20254 0.95896 1.02804 0.94327 1.22943 0.89330 1.04114 1.03242 1.21681 1.01244 0.97364 0.92802 1.15874 0.83308 1.05932 1.00099 1.24182 0.93519 0.91709 0.91595 1.81318 1.08509 1.11230 1.10043 1.43893 1.07127 1.33960 1.21795 1.22521 0.91117 1.02641 0.92590 0.84821 0.86190 0.88791 0.85183 0.90026 0.97990 0.95126 0.92401 0.78147 0.78542 0.89358 0.87980 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 12.69 67.77 0.86 -1.68 16 2 C -0.19 -4.66 9.41 25.64 0.24 -4.42 16 3 C 0.10 2.99 5.37 85.63 0.46 3.45 16 4 N -0.58 -23.74 2.45 -834.80 -2.04 -25.78 16 5 C 0.26 13.78 5.14 85.63 0.44 14.23 16 6 C -0.54 -30.38 9.39 25.60 0.24 -30.14 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.67 5.46 84.65 0.46 1.13 16 9 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 10 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 14 C 0.56 23.34 7.60 86.56 0.66 24.00 16 15 O -0.59 -29.28 14.23 -4.17 -0.06 -29.34 16 16 C -0.01 -0.43 6.60 40.58 0.27 -0.16 16 17 C -0.17 -3.75 8.44 22.48 0.19 -3.56 16 18 C -0.10 -1.76 10.80 22.50 0.24 -1.52 16 19 C 0.06 1.41 6.72 39.59 0.27 1.67 16 20 C 0.30 6.78 15.21 88.33 1.34 8.12 16 21 N -0.43 -10.98 18.54 19.00 0.35 -10.63 16 22 N -0.39 -10.76 3.18 -524.72 -1.67 -12.43 16 23 C 0.05 1.34 10.59 127.77 1.35 2.69 16 24 H 0.13 1.31 6.94 -2.91 -0.02 1.29 16 25 H 0.12 1.50 8.06 -2.91 -0.02 1.48 16 26 H 0.09 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.13 3.06 4.18 -2.39 -0.01 3.05 16 28 H 0.08 2.53 8.13 -2.39 -0.02 2.51 16 29 H 0.00 0.12 7.46 -2.39 -0.02 0.10 16 30 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.20 3.65 1.09 -2.91 0.00 3.65 16 33 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 2.08 7.87 -2.39 -0.02 2.06 16 36 H 0.09 3.04 5.89 -2.39 -0.01 3.03 16 Total: -1.00 -71.80 314.03 7.03 -64.77 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.12 Total: 8.10 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 7.03 Total: 13.82 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.08 Total: -103.29 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.06 Total: -29.34 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.80 7.03 -64.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569599574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.122 kcal (2) G-P(sol) polarization free energy of solvation -71.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds