Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48500 * 109.46759 * 269.99534 * 3 2 1 5 5 H 1.48498 * 109.46907 * 29.99468 * 3 2 1 6 6 H 1.48497 * 109.47040 * 149.99670 * 3 2 1 7 7 C 1.37878 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99913 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99849 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00263 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.99724 * 180.02562 * 11 10 9 14 14 H 1.09004 * 110.05484 * 29.30706 * 13 11 10 15 15 C 1.53874 * 110.03177 * 150.72372 * 13 11 10 16 16 C 1.54263 * 106.59851 * 119.28434 * 15 13 11 17 17 C 1.54889 * 104.19625 * 336.38984 * 16 15 13 18 18 C 1.54265 * 110.03090 * 267.89013 * 13 11 10 19 19 H 1.08998 * 110.59866 * 145.59294 * 18 13 11 20 20 C 1.50702 * 110.48559 * 23.00506 * 18 13 11 21 21 C 1.38234 * 119.99768 * 284.66743 * 20 18 13 22 22 C 1.38238 * 119.99753 * 180.02562 * 21 20 18 23 23 C 1.38234 * 120.00223 * 0.25291 * 22 21 20 24 24 C 1.38240 * 119.99825 * 359.47485 * 23 22 21 25 25 C 1.38236 * 120.00035 * 104.65208 * 20 18 13 26 26 H 0.97001 * 120.00035 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47465 * 59.99587 * 9 7 2 28 28 H 1.09006 * 109.47134 * 299.99307 * 9 7 2 29 29 H 0.96996 * 120.00265 * 0.02562 * 10 9 7 30 30 H 1.09001 * 110.03173 * 0.02562 * 15 13 11 31 31 H 1.09003 * 110.07119 * 238.59170 * 15 13 11 32 32 H 1.09005 * 110.48913 * 217.71186 * 16 15 13 33 33 H 1.08999 * 110.59899 * 95.12118 * 16 15 13 34 34 H 1.09005 * 110.75848 * 279.63070 * 17 16 15 35 35 H 1.09001 * 110.75680 * 156.25796 * 17 16 15 36 36 H 1.07996 * 120.00314 * 359.97438 * 21 20 18 37 37 H 1.08005 * 119.99773 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.00309 * 179.72704 * 23 22 21 39 39 H 1.08000 * 120.00088 * 180.29999 * 24 23 22 40 40 H 1.07998 * 120.00042 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7331 -6.0289 0.0016 14 1 3.6546 -5.7325 0.5028 15 6 2.1171 -7.2486 0.7091 16 6 2.0672 -8.3842 -0.3338 17 6 2.0677 -7.6485 -1.6968 18 6 3.0360 -6.4658 -1.4465 19 1 4.0712 -6.7941 -1.5394 20 6 2.7529 -5.3398 -2.4073 21 6 1.4478 -5.0200 -2.7319 22 6 1.1881 -3.9875 -3.6137 23 6 2.2336 -3.2783 -4.1748 24 6 3.5385 -3.5944 -3.8458 25 6 3.7982 -4.6266 -2.9637 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 3.1567 -3.4355 0.0009 30 1 1.1096 -7.0122 1.0516 31 1 2.7390 -7.5446 1.5540 32 1 1.1554 -8.9699 -0.2168 33 1 2.9448 -9.0246 -0.2457 34 1 1.0692 -7.2853 -1.9402 35 1 2.4468 -8.2977 -2.4861 36 1 0.6312 -5.5773 -2.2974 37 1 0.1685 -3.7379 -3.8677 38 1 2.0309 -2.4745 -4.8670 39 1 4.3552 -3.0372 -4.2804 40 1 4.8178 -4.8761 -2.7095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451247690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -31.347482 kcal Electronic energy + Delta-G solvation = -21710.770387 eV Core-core repulsion = 18682.248768 eV Total energy + Delta-G solvation = -3028.521619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31210 -38.09252 -36.60510 -34.03057 -32.27516 -31.53887 -30.49972 -29.24139 -27.33212 -26.79787 -23.17599 -22.40589 -21.85609 -20.56170 -20.10026 -18.90042 -17.22805 -16.33188 -15.99501 -15.44733 -15.05440 -14.72041 -14.46744 -14.16393 -14.00291 -13.74437 -13.09431 -12.82783 -12.77778 -12.32650 -11.93503 -11.80685 -11.64807 -11.32142 -11.03812 -11.02569 -11.00055 -10.84731 -10.82337 -10.51858 -10.46356 -10.25564 -10.17541 -9.32807 -8.83081 -8.66521 -8.43676 -8.24969 -7.72132 -6.11468 -4.16755 1.77053 1.87092 3.25906 3.32132 3.34523 3.49004 4.17410 4.20347 4.42254 4.65705 4.81152 4.95688 5.24838 5.26742 5.32236 5.40044 5.52330 5.53694 5.60392 5.67438 5.70563 5.78257 5.80031 5.94892 6.01639 6.04843 6.14601 6.22901 6.37125 6.45223 6.48783 6.55622 6.88275 6.99495 7.03682 7.40051 7.45092 7.57287 7.62087 7.74971 8.04726 8.75722 8.86797 9.23735 9.49761 10.98817 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.006393 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.431874 B = 4378.946705 C = 5122.275291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.255 3.745 10 N -0.706 5.706 11 C 0.513 3.487 12 O -0.558 6.558 13 C -0.110 4.110 14 H 0.084 0.916 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.036 4.036 19 H 0.085 0.915 20 C -0.086 4.086 21 C -0.097 4.097 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.264 0.736 27 H 0.026 0.974 28 H 0.021 0.979 29 H 0.387 0.613 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.943 -13.143 -5.108 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.134 3.866 10 N -0.352 5.352 11 C 0.298 3.702 12 O -0.439 6.439 13 C -0.132 4.132 14 H 0.102 0.898 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.055 4.055 19 H 0.103 0.897 20 C -0.086 4.086 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.219 0.781 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.912 -13.124 -5.091 15.683 hybrid contribution 0.936 1.348 0.074 1.642 sum 7.848 -11.777 -5.017 15.015 Atomic orbital electron populations 1.69977 1.06033 1.27049 1.49398 1.24911 0.94846 0.99237 0.94902 0.86484 0.79689 0.82987 0.78166 1.20538 1.21078 1.19824 1.21214 0.93123 0.90566 1.52506 0.92187 1.18999 0.88248 0.81991 0.97315 1.46416 1.10771 1.06142 1.71916 1.20099 0.89253 0.84207 0.76659 1.90600 1.16787 1.84767 1.51699 1.22040 0.98899 0.95622 0.96612 0.89770 1.22111 1.02452 0.93070 0.97452 1.22297 1.01345 0.97256 0.94788 1.22663 1.00145 0.95742 0.97035 1.20854 0.99919 0.93308 0.91377 0.89658 1.19634 0.93551 0.97328 0.98090 1.21181 0.96360 0.97418 0.96484 1.21077 0.98946 0.95588 0.97019 1.21065 0.92958 0.99059 1.00092 1.20975 0.96580 0.97561 0.98679 1.20869 0.98024 0.96583 0.98014 0.92624 0.95622 0.96059 0.78079 0.89796 0.91870 0.91610 0.91962 0.90371 0.91610 0.85514 0.86574 0.86686 0.86705 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.26 6.82 5.43 -5.19 -0.03 6.79 16 10 N -0.71 -15.15 5.23 -61.46 -0.32 -15.47 16 11 C 0.51 10.18 4.21 -10.98 -0.05 10.13 16 12 O -0.56 -13.00 14.29 5.56 0.08 -12.92 16 13 C -0.11 -1.63 3.22 -90.65 -0.29 -1.92 16 14 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.51 6.32 -25.62 -0.16 -1.67 16 16 C -0.12 -1.34 6.83 -25.07 -0.17 -1.52 16 17 C -0.12 -1.47 6.18 -24.74 -0.15 -1.62 16 18 C -0.04 -0.47 3.03 -90.11 -0.27 -0.75 16 19 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 20 C -0.09 -1.33 3.96 -104.62 -0.41 -1.74 16 21 C -0.10 -1.70 7.04 -39.58 -0.28 -1.98 16 22 C -0.11 -1.91 10.05 -39.58 -0.40 -2.31 16 23 C -0.11 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 25 C -0.12 -1.70 9.68 -39.58 -0.38 -2.09 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.39 7.53 8.32 -40.82 -0.34 7.19 16 30 H 0.08 1.34 6.81 -51.93 -0.35 0.99 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.12 5.97 -51.93 -0.31 0.81 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.13 2.36 5.27 -52.49 -0.28 2.09 16 37 H 0.12 1.96 8.06 -52.48 -0.42 1.53 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -31.48 323.97 -9.34 -40.81 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.88 Total: 8.61 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -3.81 Total: -16.47 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.41 Total: -41.08 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.48 -9.34 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451247690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.466 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds