Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48500 * 109.46759 * 269.99534 * 3 2 1 5 5 H 1.48498 * 109.46907 * 29.99468 * 3 2 1 6 6 H 1.48497 * 109.47040 * 149.99670 * 3 2 1 7 7 C 1.37878 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99913 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99849 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00263 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.99724 * 180.02562 * 11 10 9 14 14 H 1.09004 * 110.05484 * 29.30706 * 13 11 10 15 15 C 1.53874 * 110.03177 * 150.72372 * 13 11 10 16 16 C 1.54263 * 106.59851 * 119.28434 * 15 13 11 17 17 C 1.54889 * 104.19625 * 336.38984 * 16 15 13 18 18 C 1.54265 * 110.03090 * 267.89013 * 13 11 10 19 19 H 1.08998 * 110.59866 * 145.59294 * 18 13 11 20 20 C 1.50702 * 110.48559 * 23.00506 * 18 13 11 21 21 C 1.38234 * 119.99768 * 284.66743 * 20 18 13 22 22 C 1.38238 * 119.99753 * 180.02562 * 21 20 18 23 23 C 1.38234 * 120.00223 * 0.25291 * 22 21 20 24 24 C 1.38240 * 119.99825 * 359.47485 * 23 22 21 25 25 C 1.38236 * 120.00035 * 104.65208 * 20 18 13 26 26 H 0.97001 * 120.00035 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47465 * 59.99587 * 9 7 2 28 28 H 1.09006 * 109.47134 * 299.99307 * 9 7 2 29 29 H 0.96996 * 120.00265 * 0.02562 * 10 9 7 30 30 H 1.09001 * 110.03173 * 0.02562 * 15 13 11 31 31 H 1.09003 * 110.07119 * 238.59170 * 15 13 11 32 32 H 1.09005 * 110.48913 * 217.71186 * 16 15 13 33 33 H 1.08999 * 110.59899 * 95.12118 * 16 15 13 34 34 H 1.09005 * 110.75848 * 279.63070 * 17 16 15 35 35 H 1.09001 * 110.75680 * 156.25796 * 17 16 15 36 36 H 1.07996 * 120.00314 * 359.97438 * 21 20 18 37 37 H 1.08005 * 119.99773 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.00309 * 179.72704 * 23 22 21 39 39 H 1.08000 * 120.00088 * 180.29999 * 24 23 22 40 40 H 1.07998 * 120.00042 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7331 -6.0289 0.0016 14 1 3.6546 -5.7325 0.5028 15 6 2.1171 -7.2486 0.7091 16 6 2.0672 -8.3842 -0.3338 17 6 2.0677 -7.6485 -1.6968 18 6 3.0360 -6.4658 -1.4465 19 1 4.0712 -6.7941 -1.5394 20 6 2.7529 -5.3398 -2.4073 21 6 1.4478 -5.0200 -2.7319 22 6 1.1881 -3.9875 -3.6137 23 6 2.2336 -3.2783 -4.1748 24 6 3.5385 -3.5944 -3.8458 25 6 3.7982 -4.6266 -2.9637 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 3.1567 -3.4355 0.0009 30 1 1.1096 -7.0122 1.0516 31 1 2.7390 -7.5446 1.5540 32 1 1.1554 -8.9699 -0.2168 33 1 2.9448 -9.0246 -0.2457 34 1 1.0692 -7.2853 -1.9402 35 1 2.4468 -8.2977 -2.4861 36 1 0.6312 -5.5773 -2.2974 37 1 0.1685 -3.7379 -3.8677 38 1 2.0309 -2.4745 -4.8670 39 1 4.3552 -3.0372 -4.2804 40 1 4.8178 -4.8761 -2.7095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451247690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -50.434116 kcal Electronic energy + Delta-G solvation = -21711.598045 eV Core-core repulsion = 18682.248768 eV Total energy + Delta-G solvation = -3029.349277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65105 -39.50660 -37.89481 -35.99909 -34.29316 -32.71918 -31.73968 -30.61366 -28.84127 -28.28452 -24.99311 -23.81017 -23.11035 -22.05592 -21.17267 -20.43671 -18.79033 -17.96242 -17.36415 -17.03257 -16.68230 -16.26743 -15.72799 -15.58774 -15.50707 -15.11324 -14.52905 -14.28865 -14.00144 -13.93119 -13.79814 -13.42958 -13.04102 -12.84673 -12.72373 -12.44800 -12.25009 -12.12874 -12.03983 -11.93574 -11.68354 -11.55492 -11.46042 -11.24113 -10.77792 -10.49885 -9.74125 -9.66727 -9.45639 -8.27444 -6.42711 0.52482 0.60447 1.40500 1.42876 1.53860 1.91791 2.33585 2.69431 2.94198 3.07467 3.55529 3.75482 3.82773 4.10774 4.18247 4.20173 4.33893 4.37699 4.53901 4.56703 4.62237 4.66019 4.74293 4.79535 4.87606 5.10019 5.12003 5.15573 5.21568 5.26906 5.29065 5.31375 5.35061 5.53341 5.55798 5.64981 5.73005 5.77791 5.81022 5.90280 6.22708 6.68502 7.03468 7.26370 7.62222 8.84725 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.006393 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.431874 B = 4378.946705 C = 5122.275291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.280 3.720 10 N -0.703 5.703 11 C 0.510 3.490 12 O -0.600 6.600 13 C -0.103 4.103 14 H 0.116 0.884 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.031 4.031 19 H 0.129 0.871 20 C -0.089 4.089 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.112 4.112 26 H 0.266 0.734 27 H -0.017 1.017 28 H -0.024 1.024 29 H 0.401 0.599 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 -13.854 -5.037 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.802 3.198 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.585 4.585 8 H 0.096 0.904 9 C 0.157 3.843 10 N -0.351 5.351 11 C 0.298 3.702 12 O -0.483 6.483 13 C -0.124 4.124 14 H 0.134 0.866 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.158 4.158 18 C -0.050 4.050 19 H 0.147 0.853 20 C -0.089 4.089 21 C -0.134 4.134 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.130 4.130 26 H 0.075 0.925 27 H 0.001 0.999 28 H -0.006 1.006 29 H 0.236 0.764 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.478 -13.872 -5.019 18.692 hybrid contribution -0.571 1.519 0.042 1.623 sum 10.907 -12.354 -4.977 17.215 Atomic orbital electron populations 1.70148 1.08235 1.28271 1.50415 1.25996 0.95672 1.03659 0.94042 0.85246 0.78608 0.77356 0.78577 1.19639 1.21032 1.17914 1.21558 0.93968 0.90718 1.52227 0.90364 1.18325 0.88452 0.84371 0.93183 1.46158 1.10505 1.05668 1.72730 1.21141 0.89750 0.84747 0.74552 1.90588 1.19397 1.85361 1.52913 1.22137 0.98258 0.93422 0.98624 0.86625 1.22151 1.00789 0.93292 0.99019 1.22298 1.02954 0.96658 0.92897 1.22669 0.98461 0.96068 0.98628 1.21028 1.02336 0.92444 0.89169 0.85274 1.19916 0.92585 0.98058 0.98306 1.21112 0.97281 0.97766 0.97261 1.21180 0.99110 0.96919 0.98545 1.21292 0.93590 0.99373 1.00560 1.21389 0.96445 0.97784 0.98415 1.21326 0.99497 0.95434 0.96729 0.92475 0.99912 1.00596 0.76439 0.93519 0.88948 0.91754 0.88478 0.93731 0.89198 0.88080 0.88020 0.85766 0.83784 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.55 -30.39 9.28 25.60 0.24 -30.15 16 8 H 0.08 3.98 7.60 -2.91 -0.02 3.95 16 9 C 0.28 15.75 5.43 85.63 0.46 16.22 16 10 N -0.70 -30.60 5.23 -466.76 -2.44 -33.04 16 11 C 0.51 20.65 4.21 87.66 0.37 21.01 16 12 O -0.60 -29.91 14.29 -3.03 -0.04 -29.95 16 13 C -0.10 -2.80 3.22 -10.81 -0.03 -2.83 16 14 H 0.12 2.46 8.14 -2.38 -0.02 2.45 16 15 C -0.11 -2.83 6.32 31.32 0.20 -2.63 16 16 C -0.11 -2.17 6.83 31.67 0.22 -1.95 16 17 C -0.12 -2.76 6.18 31.88 0.20 -2.56 16 18 C -0.03 -0.72 3.03 -10.47 -0.03 -0.76 16 19 H 0.13 2.00 8.03 -2.39 -0.02 1.98 16 20 C -0.09 -2.61 3.96 -19.87 -0.08 -2.69 16 21 C -0.12 -4.30 7.04 22.27 0.16 -4.15 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 23 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 24 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 25 C -0.11 -2.89 9.68 22.27 0.22 -2.67 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H -0.02 -1.53 8.14 -2.38 -0.02 -1.55 16 29 H 0.40 15.03 8.32 -92.71 -0.77 14.26 16 30 H 0.05 1.51 6.81 -2.39 -0.02 1.50 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.32 5.97 -2.38 -0.01 1.31 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 4.19 5.27 -2.91 -0.02 4.17 16 37 H 0.10 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 40 H 0.15 2.75 8.04 -2.91 -0.02 2.72 16 Total: -1.00 -74.31 323.97 3.13 -71.18 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.26 Total: 28.52 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.04 Total: -24.78 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.16 Total: -90.15 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.04 Total: -29.95 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.31 3.13 -71.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451247690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.745 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds