Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99940 * 2 1 4 4 C 1.53001 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.50320 * 305.08105 * 4 3 2 6 6 O 1.20828 * 120.00127 * 264.91531 * 5 4 3 7 7 O 1.34222 * 119.99706 * 84.91603 * 5 4 3 8 8 C 1.53100 * 109.50581 * 185.00029 * 4 3 2 9 9 N 1.47020 * 109.25460 * 296.86716 * 8 4 3 10 10 C 1.46898 * 110.99771 * 177.60927 * 9 8 4 11 11 C 1.53006 * 109.47006 * 169.99609 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 C 1.47020 * 110.74983 * 301.38404 * 9 8 4 21 21 C 1.53092 * 109.25811 * 58.61896 * 20 9 8 22 22 O 1.43009 * 109.54610 * 65.19088 * 4 3 2 23 23 H 1.08996 * 109.47328 * 300.00180 * 1 2 3 24 24 H 1.09000 * 109.47383 * 60.00516 * 1 2 3 25 25 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47369 * 59.99452 * 3 2 1 27 27 H 1.09003 * 109.46625 * 299.99334 * 3 2 1 28 28 H 0.96703 * 116.99675 * 179.97438 * 7 5 4 29 29 H 1.09000 * 109.50526 * 176.93351 * 8 4 3 30 30 H 1.08990 * 109.50974 * 56.79724 * 8 4 3 31 31 H 1.09001 * 109.47062 * 49.99863 * 10 9 8 32 32 H 1.08993 * 109.47084 * 289.99310 * 10 9 8 33 33 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 34 34 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 35 35 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.50618 * 178.55233 * 20 9 8 37 37 H 1.09003 * 109.50594 * 298.67788 * 20 9 8 38 38 H 1.09004 * 109.50425 * 183.21551 * 21 20 9 39 39 H 1.08996 * 109.54553 * 63.10514 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9730 0.3309 1.1615 6 8 4.3046 0.8496 2.2012 7 8 3.9944 -1.0058 1.0416 8 6 4.1586 2.5775 0.1251 9 7 3.7910 3.3810 -1.0499 10 6 4.3231 4.7459 -0.9416 11 6 4.1400 5.4721 -2.2758 12 6 4.6852 6.8725 -2.1646 13 1 5.1193 7.2107 -1.2352 14 6 4.6309 7.7217 -3.2494 15 7 4.1027 7.3097 -4.3812 16 14 5.3074 9.4574 -3.1116 17 1 6.7522 9.4001 -2.7730 18 1 5.1307 10.1618 -4.4070 19 1 4.5778 10.1899 -2.0457 20 6 4.2493 2.7335 -2.2877 21 6 3.6253 1.3393 -2.3892 22 8 3.9672 0.5834 -1.2242 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 4.2827 -1.5113 1.8140 29 1 5.2435 2.4872 0.1795 30 1 3.7873 3.0622 1.0280 31 1 5.3836 4.7039 -0.6933 32 1 3.7877 5.2835 -0.1590 33 1 4.6753 4.9344 -3.0585 34 1 3.0795 5.5141 -2.5241 35 1 4.0642 7.9073 -5.1443 36 1 3.9443 3.3322 -3.1461 37 1 5.3357 2.6459 -2.2719 38 1 4.0068 0.8335 -3.2762 39 1 2.5413 1.4292 -2.4595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711510792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -167.081433 kcal Electronic energy + Delta-G solvation = -22337.910349 eV Core-core repulsion = 18860.360851 eV Total energy + Delta-G solvation = -3477.549499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96667 -39.24867 -37.58484 -36.24150 -35.87903 -33.07175 -32.18894 -30.01226 -28.51233 -26.73913 -25.12412 -24.90343 -23.61004 -22.30979 -20.15235 -19.36961 -18.40405 -17.42766 -16.75370 -16.55059 -16.26683 -15.71389 -15.54096 -14.98283 -14.79758 -14.62997 -14.27273 -14.03696 -13.69520 -13.40141 -12.99397 -12.58857 -12.33680 -12.15090 -11.72265 -11.56010 -11.54683 -11.47320 -11.09907 -10.95438 -10.80856 -10.59576 -10.34301 -10.05053 -9.80585 -9.68905 -9.36624 -9.19318 -8.41242 -7.97996 -6.07033 -4.09591 2.02125 2.81894 3.30028 3.34545 3.35585 3.37473 3.75659 4.26825 4.45032 4.61914 4.75910 5.04720 5.18886 5.20577 5.24509 5.29645 5.31289 5.33773 5.41917 5.54077 5.64176 5.67448 5.80725 6.02759 6.17673 6.28320 6.32368 6.37718 6.78781 6.92583 7.02107 7.22884 7.33706 7.60941 7.73663 7.85354 7.94141 8.33875 8.96211 9.54729 11.04282 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.004159 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.046855 B = 6730.290198 C = 7012.630270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.044 3.956 4 C 0.140 3.860 5 C 0.512 3.488 6 O -0.512 6.512 7 O -0.487 6.487 8 C 0.042 3.958 9 N -0.536 5.536 10 C 0.062 3.938 11 C 0.022 3.978 12 C -0.524 4.524 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.009 3.991 21 C 0.059 3.941 22 O -0.356 6.356 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.404 0.596 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.109 0.891 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 -15.613 7.456 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.032 4.032 4 C 0.098 3.902 5 C 0.353 3.647 6 O -0.400 6.400 7 O -0.296 6.296 8 C -0.087 4.087 9 N -0.261 5.261 10 C -0.064 4.064 11 C -0.015 4.015 12 C -0.563 4.563 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.119 4.119 21 C -0.017 4.017 22 O -0.275 6.275 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.261 0.739 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.995 -15.497 7.175 17.792 hybrid contribution 1.095 1.140 0.552 1.675 sum -3.900 -14.356 7.727 16.764 Atomic orbital electron populations 1.22751 0.80942 1.02675 1.00158 1.87971 1.19659 1.26742 1.95515 1.23035 0.90978 0.85714 1.03523 1.21220 0.93700 0.91341 0.83893 1.22594 0.72568 0.81474 0.88015 1.90745 1.44756 1.74495 1.30034 1.84671 1.79468 1.19393 1.46096 1.22501 0.98917 0.90684 0.96615 1.62419 1.59800 1.03542 1.00357 1.22401 0.96353 0.85199 1.02459 1.19237 0.97947 0.94281 0.90049 1.21115 1.39711 0.97597 0.97841 0.92721 1.24974 0.95280 0.98591 0.95320 1.69943 1.44865 1.36308 1.02147 0.86634 0.79525 0.84445 0.77264 1.20264 1.21241 1.20180 1.22969 0.98466 0.95101 0.95356 1.22913 1.00215 0.91371 0.87225 1.88115 1.79103 1.47477 1.12782 0.94194 0.93762 0.89586 0.91671 0.89283 0.73857 0.92940 0.88498 0.95618 0.91384 0.96084 0.95582 0.92859 0.87260 0.93902 0.87739 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.00 9.99 -42.98 -0.43 -5.43 16 3 C 0.04 0.60 4.48 37.16 0.17 0.76 16 4 C 0.14 2.07 0.85 -91.72 -0.08 1.99 16 5 C 0.51 7.41 6.78 36.01 0.24 7.65 16 6 O -0.51 -8.18 16.93 -18.75 -0.32 -8.50 16 7 O -0.49 -5.91 12.98 -44.96 -0.58 -6.49 16 8 C 0.04 0.66 3.79 -3.71 -0.01 0.64 16 9 N -0.54 -9.26 4.34 -234.30 -1.02 -10.28 16 10 C 0.06 1.26 5.22 -3.82 -0.02 1.24 16 11 C 0.02 0.54 4.24 -27.88 -0.12 0.42 16 12 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 21 C 0.06 0.82 6.61 37.21 0.25 1.07 16 22 O -0.36 -5.46 10.04 -55.51 -0.56 -6.02 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.21 6.02 -51.93 -0.31 0.90 16 28 H 0.40 2.79 9.10 45.56 0.41 3.20 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 1.48 7.98 -51.93 -0.41 1.06 16 31 H 0.03 0.52 8.08 -51.93 -0.42 0.11 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.02 0.54 6.28 -51.93 -0.33 0.21 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.11 1.95 6.05 -51.93 -0.31 1.64 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.85 6.39 -51.93 -0.33 0.52 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -32.06 320.14 -6.30 -38.37 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.05 Total: 0.37 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 1.11 Total: 2.20 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.28 Total: -35.55 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.89 Total: -26.43 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.06 -6.30 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711510792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.714 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds