Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99940 * 2 1 4 4 C 1.53001 * 109.47112 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.50320 * 305.08105 * 4 3 2 6 6 O 1.20828 * 120.00127 * 264.91531 * 5 4 3 7 7 O 1.34222 * 119.99706 * 84.91603 * 5 4 3 8 8 C 1.53100 * 109.50581 * 185.00029 * 4 3 2 9 9 N 1.47020 * 109.25460 * 296.86716 * 8 4 3 10 10 C 1.46898 * 110.99771 * 177.60927 * 9 8 4 11 11 C 1.53006 * 109.47006 * 169.99609 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 C 1.47020 * 110.74983 * 301.38404 * 9 8 4 21 21 C 1.53092 * 109.25811 * 58.61896 * 20 9 8 22 22 O 1.43009 * 109.54610 * 65.19088 * 4 3 2 23 23 H 1.08996 * 109.47328 * 300.00180 * 1 2 3 24 24 H 1.09000 * 109.47383 * 60.00516 * 1 2 3 25 25 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47369 * 59.99452 * 3 2 1 27 27 H 1.09003 * 109.46625 * 299.99334 * 3 2 1 28 28 H 0.96703 * 116.99675 * 179.97438 * 7 5 4 29 29 H 1.09000 * 109.50526 * 176.93351 * 8 4 3 30 30 H 1.08990 * 109.50974 * 56.79724 * 8 4 3 31 31 H 1.09001 * 109.47062 * 49.99863 * 10 9 8 32 32 H 1.08993 * 109.47084 * 289.99310 * 10 9 8 33 33 H 1.09001 * 109.46801 * 300.00064 * 11 10 9 34 34 H 1.09001 * 109.46998 * 59.99660 * 11 10 9 35 35 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.50618 * 178.55233 * 20 9 8 37 37 H 1.09003 * 109.50594 * 298.67788 * 20 9 8 38 38 H 1.09004 * 109.50425 * 183.21551 * 21 20 9 39 39 H 1.08996 * 109.54553 * 63.10514 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9730 0.3309 1.1615 6 8 4.3046 0.8496 2.2012 7 8 3.9944 -1.0058 1.0416 8 6 4.1586 2.5775 0.1251 9 7 3.7910 3.3810 -1.0499 10 6 4.3231 4.7459 -0.9416 11 6 4.1400 5.4721 -2.2758 12 6 4.6852 6.8725 -2.1646 13 1 5.1193 7.2107 -1.2352 14 6 4.6309 7.7217 -3.2494 15 7 4.1027 7.3097 -4.3812 16 14 5.3074 9.4574 -3.1116 17 1 6.7522 9.4001 -2.7730 18 1 5.1307 10.1618 -4.4070 19 1 4.5778 10.1899 -2.0457 20 6 4.2493 2.7335 -2.2877 21 6 3.6253 1.3393 -2.3892 22 8 3.9672 0.5834 -1.2242 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 4.2827 -1.5113 1.8140 29 1 5.2435 2.4872 0.1795 30 1 3.7873 3.0622 1.0280 31 1 5.3836 4.7039 -0.6933 32 1 3.7877 5.2835 -0.1590 33 1 4.6753 4.9344 -3.0585 34 1 3.0795 5.5141 -2.5241 35 1 4.0642 7.9073 -5.1443 36 1 3.9443 3.3322 -3.1461 37 1 5.3357 2.6459 -2.2719 38 1 4.0068 0.8335 -3.2762 39 1 2.5413 1.4292 -2.4595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711510792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -191.146214 kcal Electronic energy + Delta-G solvation = -22338.953877 eV Core-core repulsion = 18860.360851 eV Total energy + Delta-G solvation = -3478.593026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11317 -40.42185 -38.60457 -37.41754 -37.16364 -35.04337 -33.41588 -31.76458 -29.75036 -27.89466 -26.59790 -25.98796 -25.09541 -23.74474 -21.69776 -20.61076 -19.53312 -18.70386 -18.37127 -17.81495 -17.31694 -16.98953 -16.64728 -16.50244 -16.06727 -16.03897 -15.72304 -15.27188 -14.93801 -14.57848 -14.44133 -14.12379 -13.83174 -13.30797 -13.27774 -12.88278 -12.79489 -12.64584 -12.58915 -12.47494 -12.34229 -11.96673 -11.94171 -11.57836 -11.30897 -11.24495 -10.78601 -10.69394 -10.53096 -9.42918 -8.20112 -6.30256 0.91355 1.41756 1.43598 1.51490 1.77811 2.29211 2.41490 2.66202 3.01150 3.14145 3.45628 3.70491 3.94854 3.99798 4.12299 4.16115 4.26033 4.36574 4.47257 4.52297 4.54925 4.56054 4.64490 4.69206 4.85897 4.87172 4.91659 5.00246 5.41038 5.42779 5.60134 5.74167 5.80767 5.93577 5.99411 6.08313 6.27034 6.84939 6.91791 7.38574 8.91307 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.004159 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.046855 B = 6730.290198 C = 7012.630270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.050 3.950 4 C 0.137 3.863 5 C 0.517 3.483 6 O -0.532 6.532 7 O -0.485 6.485 8 C 0.045 3.955 9 N -0.534 5.534 10 C 0.076 3.924 11 C 0.032 3.968 12 C -0.546 4.546 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.011 3.989 21 C 0.066 3.934 22 O -0.363 6.363 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.427 0.573 29 H 0.045 0.955 30 H 0.102 0.898 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.006 0.994 34 H 0.001 0.999 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.129 0.871 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 -16.155 8.185 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.095 3.905 5 C 0.359 3.641 6 O -0.423 6.423 7 O -0.297 6.297 8 C -0.083 4.083 9 N -0.259 5.259 10 C -0.050 4.050 11 C -0.006 4.006 12 C -0.585 4.585 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.567 5.567 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.117 4.117 21 C -0.010 4.010 22 O -0.282 6.282 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.122 0.878 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.288 0.712 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.147 0.853 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.185 -16.077 7.923 18.658 hybrid contribution 1.121 1.210 0.325 1.682 sum -4.063 -14.867 8.248 17.481 Atomic orbital electron populations 1.22969 0.79142 1.04117 1.00894 1.87938 1.21607 1.26323 1.95630 1.22922 0.90027 0.86133 1.03633 1.21209 0.94668 0.90609 0.84029 1.22428 0.72127 0.82123 0.87433 1.90740 1.45812 1.75015 1.30683 1.84608 1.79053 1.18390 1.47618 1.22469 0.98619 0.91397 0.95843 1.62348 1.59506 1.02574 1.01467 1.22074 0.96323 0.86737 0.99908 1.19047 0.95790 0.93816 0.91910 1.21564 1.39809 0.99024 0.98091 0.92410 1.25849 0.95491 1.02869 0.94934 1.70065 1.45946 1.37847 1.02874 0.85562 0.79066 0.79303 0.77481 1.19481 1.20814 1.19278 1.22938 0.98174 0.96403 0.94197 1.22959 1.00572 0.89746 0.87735 1.88105 1.79350 1.47615 1.13143 0.93260 0.93228 0.87847 0.91021 0.89699 0.71191 0.93720 0.87994 0.95948 0.91051 0.97620 0.98050 0.92726 0.89171 0.94692 0.85326 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -9.63 9.99 -141.57 -1.41 -11.05 16 3 C 0.05 1.26 4.48 71.98 0.32 1.59 16 4 C 0.14 3.86 0.85 -11.50 -0.01 3.85 16 5 C 0.52 14.16 6.78 71.24 0.48 14.64 16 6 O -0.53 -16.34 16.93 21.96 0.37 -15.97 16 7 O -0.49 -10.72 12.98 -45.87 -0.60 -11.32 16 8 C 0.05 1.40 3.79 86.31 0.33 1.73 16 9 N -0.53 -18.44 4.34 -895.19 -3.88 -22.32 16 10 C 0.08 3.13 5.22 86.31 0.45 3.58 16 11 C 0.03 1.60 4.24 29.85 0.13 1.72 16 12 C -0.55 -30.28 9.11 25.60 0.23 -30.04 16 13 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 16 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.01 0.36 4.94 86.31 0.43 0.79 16 21 C 0.07 1.76 6.61 72.01 0.48 2.23 16 22 O -0.36 -10.60 10.04 -129.59 -1.30 -11.90 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 2.21 6.02 -2.39 -0.01 2.19 16 28 H 0.43 4.88 9.10 -74.05 -0.67 4.20 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 3.03 7.98 -2.39 -0.02 3.01 16 31 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.01 0.30 6.28 -2.39 -0.01 0.28 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.09 3.32 6.05 -2.39 -0.01 3.31 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.07 1.81 6.39 -2.39 -0.02 1.79 16 Total: -1.00 -67.68 320.14 0.42 -67.26 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.38 Total: 11.66 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 4.55 Total: 2.60 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -3.60 Total: -76.71 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -2.94 Total: -50.23 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.68 0.42 -67.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711510792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.886 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds