Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21317 * 119.99646 * 2 1 4 4 C 1.46751 * 120.00353 * 180.02562 * 2 1 3 5 5 C 1.40122 * 120.09531 * 5.84620 * 4 2 1 6 6 C 1.36523 * 119.90609 * 179.71684 * 5 4 2 7 7 C 1.39339 * 120.09125 * 0.51511 * 6 5 4 8 8 N 1.38891 * 119.90301 * 179.75523 * 7 6 5 9 9 C 1.46497 * 120.00342 * 6.46073 * 8 7 6 10 10 C 1.52999 * 109.47703 * 177.99105 * 9 8 7 11 11 C 1.50698 * 115.54713 * 300.87596 * 10 9 8 12 12 H 1.08003 * 120.00030 * 114.71646 * 11 10 9 13 13 C 1.37876 * 119.99806 * 294.70583 * 11 10 9 14 14 N 1.31519 * 119.99830 * 174.60184 * 13 11 10 15 15 Si 1.86792 * 120.00217 * 354.60227 * 13 11 10 16 16 H 1.48507 * 109.47381 * 88.85567 * 15 13 11 17 17 H 1.48499 * 109.47388 * 208.85790 * 15 13 11 18 18 H 1.48502 * 109.47314 * 328.85650 * 15 13 11 19 19 C 1.52998 * 117.49850 * 86.53771 * 10 9 8 20 20 C 1.52994 * 117.49917 * 155.20011 * 10 9 8 21 21 C 1.39298 * 120.19148 * 359.48769 * 7 6 5 22 22 C 1.36558 * 120.09436 * 0.24717 * 21 7 6 23 23 C 1.50697 * 120.04631 * 179.97438 * 22 21 7 24 24 H 1.09002 * 109.46916 * 185.13044 * 1 2 3 25 25 H 1.09004 * 109.47218 * 305.12203 * 1 2 3 26 26 H 1.08997 * 109.47478 * 65.12984 * 1 2 3 27 27 H 1.08001 * 120.04982 * 359.97438 * 5 4 2 28 28 H 1.07995 * 119.95874 * 180.25673 * 6 5 4 29 29 H 0.97001 * 119.99898 * 186.45719 * 8 7 6 30 30 H 1.09005 * 109.46795 * 57.99032 * 9 8 7 31 31 H 1.09000 * 109.46961 * 297.99533 * 9 8 7 32 32 H 0.97005 * 119.99655 * 180.02562 * 14 13 11 33 33 H 1.08999 * 117.50330 * 215.00742 * 19 10 9 34 34 H 1.09008 * 117.49420 * 0.02971 * 19 10 9 35 35 H 1.08998 * 117.50240 * 359.97438 * 20 10 9 36 36 H 1.08998 * 117.49832 * 144.97786 * 20 10 9 37 37 H 1.08001 * 119.94779 * 180.23522 * 21 7 6 38 38 H 1.09010 * 109.47158 * 96.85540 * 23 22 21 39 39 H 1.08998 * 109.47533 * 216.85382 * 23 22 21 40 40 H 1.09004 * 109.47423 * 336.85921 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2408 -1.2709 -0.0006 5 6 1.5477 -2.4824 -0.1246 6 6 2.2348 -3.6621 -0.1305 7 6 3.6223 -3.6631 -0.0026 8 7 4.3169 -4.8658 -0.0040 9 6 3.6108 -6.1192 -0.2808 10 6 4.6081 -7.2795 -0.2709 11 6 5.7335 -7.1776 -1.2679 12 1 6.7518 -7.0718 -0.9240 13 6 5.4632 -7.2198 -2.6193 14 7 6.4298 -7.0248 -3.4896 15 14 3.7243 -7.5538 -3.2140 16 1 2.9871 -6.2703 -3.3344 17 1 3.7741 -8.2222 -4.5391 18 1 3.0290 -8.4345 -2.2412 19 6 4.9155 -7.9353 1.0768 20 6 4.0649 -8.6753 0.0413 21 6 4.3153 -2.4611 0.1210 22 6 3.6363 -1.2763 0.1224 23 6 4.3870 0.0235 0.2568 24 1 -0.3633 -1.0236 0.0919 25 1 -0.3634 0.5912 0.8406 26 1 -0.3634 0.4322 -0.9323 27 1 0.4719 -2.4827 -0.2196 28 1 1.7019 -4.5961 -0.2302 29 1 5.2696 -4.8759 0.1783 30 1 3.1334 -6.0589 -1.2589 31 1 2.8523 -6.2855 0.4841 32 1 6.2395 -7.0540 -4.4404 33 1 5.9317 -8.2932 1.2423 34 1 4.4068 -7.5404 1.9563 35 1 2.9972 -8.7670 0.2401 36 1 4.5213 -9.5199 -0.4747 37 1 5.3911 -2.4662 0.2161 38 1 4.5524 0.4515 -0.7320 39 1 3.8043 0.7189 0.8608 40 1 5.3475 -0.1598 0.7386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000656649379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = 10.575640 kcal Electronic energy + Delta-G solvation = -20591.517658 eV Core-core repulsion = 17564.813962 eV Total energy + Delta-G solvation = -3026.703696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.04851 -38.47940 -37.24615 -34.60069 -32.63572 -32.27207 -30.61319 -29.01724 -26.70728 -26.33249 -24.97831 -22.90819 -21.68503 -20.88333 -19.53142 -19.22912 -16.99644 -16.61729 -16.19076 -15.52144 -15.18987 -14.96114 -14.59730 -14.21128 -13.82863 -13.70290 -13.26257 -13.19308 -12.86803 -12.83884 -12.50733 -12.19274 -12.09423 -12.07828 -11.83531 -11.71760 -11.16470 -10.86098 -10.73116 -10.61936 -10.36410 -9.78970 -9.61107 -9.25665 -9.18902 -8.81446 -8.62958 -8.60295 -7.04073 -6.25709 -4.29224 1.11490 1.73308 2.72576 3.16597 3.28490 3.30729 3.81918 4.11825 4.28655 4.34965 4.78738 4.90141 5.06374 5.08735 5.09967 5.37915 5.44960 5.51854 5.55542 5.66053 5.71361 5.80542 5.89304 5.94500 5.96925 6.00967 6.02633 6.14358 6.28540 6.35095 6.36894 6.52231 6.57748 6.61490 6.80572 6.88290 6.98150 7.09238 7.56100 7.72807 7.80860 8.18221 8.32980 8.75586 9.36869 10.85561 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.004578 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.176800 B = 6115.160928 C = 6139.268011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.399 3.601 3 O -0.480 6.480 4 C -0.266 4.266 5 C -0.015 4.015 6 C -0.230 4.230 7 C 0.272 3.728 8 N -0.698 5.698 9 C 0.149 3.851 10 C -0.018 4.018 11 C -0.491 4.491 12 H 0.077 0.923 13 C 0.084 3.916 14 N -0.890 5.890 15 Si 0.867 3.133 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.250 1.250 19 C -0.180 4.180 20 C -0.185 4.185 21 C -0.225 4.225 22 C 0.030 3.970 23 C -0.120 4.120 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.411 0.589 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.267 0.733 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 7.647 7.703 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.282 3.718 3 O -0.360 6.360 4 C -0.270 4.270 5 C -0.035 4.035 6 C -0.253 4.253 7 C 0.160 3.840 8 N -0.319 5.319 9 C 0.025 3.975 10 C -0.019 4.019 11 C -0.528 4.528 12 H 0.095 0.905 13 C -0.120 4.120 14 N -0.526 5.526 15 Si 0.694 3.306 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.174 1.174 19 C -0.217 4.217 20 C -0.223 4.223 21 C -0.248 4.248 22 C 0.029 3.971 23 C -0.176 4.176 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.247 0.753 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.126 7.939 7.452 14.869 hybrid contribution -0.585 -0.547 -0.569 0.982 sum -10.711 7.392 6.882 14.722 Atomic orbital electron populations 1.22221 0.95088 1.04331 1.04176 1.22143 0.90976 0.87932 0.70787 1.90459 1.71456 1.34884 1.39190 1.19811 0.93807 0.94228 1.19116 1.20853 0.99043 0.91145 0.92410 1.20363 0.92476 0.98768 1.13699 1.18252 0.91539 0.86496 0.87743 1.44840 1.11819 1.03215 1.71983 1.21208 0.94011 0.83682 0.98614 1.19556 0.97176 0.89042 0.96118 1.20203 0.92229 1.51552 0.88860 0.90471 1.24917 0.96868 0.93560 0.96619 1.69886 1.32584 1.48009 1.02141 0.87041 0.85773 0.79169 0.78579 1.20263 1.21770 1.17412 1.22820 1.00276 1.06168 0.92435 1.23032 0.97171 0.97971 1.04145 1.20223 0.99811 0.90454 1.14330 1.19556 0.92299 0.94938 0.90313 1.21072 0.99021 0.94565 1.02943 0.90107 0.89560 0.89343 0.85683 0.85945 0.75254 0.92614 0.93696 0.92356 0.89581 0.90854 0.91139 0.89239 0.85735 0.90888 0.89363 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 10.16 36.00 0.37 -1.50 16 2 C 0.40 5.36 7.15 -30.87 -0.22 5.14 16 3 O -0.48 -7.61 14.07 5.53 0.08 -7.53 16 4 C -0.27 -3.88 5.87 -105.06 -0.62 -4.50 16 5 C -0.02 -0.21 9.35 -39.49 -0.37 -0.58 16 6 C -0.23 -3.56 9.25 -39.79 -0.37 -3.93 16 7 C 0.27 4.61 6.64 -83.86 -0.56 4.05 16 8 N -0.70 -12.64 5.55 -58.63 -0.33 -12.96 16 9 C 0.15 2.83 4.40 -4.04 -0.02 2.81 16 10 C -0.02 -0.37 0.90 -155.67 -0.14 -0.51 16 11 C -0.49 -12.52 8.95 -34.44 -0.31 -12.83 16 12 H 0.08 2.17 8.06 -52.48 -0.42 1.74 16 13 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 14 N -0.89 -25.85 13.96 55.43 0.77 -25.07 16 15 Si 0.87 20.25 25.01 -169.99 -4.25 16.00 16 16 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.25 -5.41 5.84 56.52 0.33 -5.08 16 19 C -0.18 -3.28 9.94 -26.69 -0.27 -3.55 16 20 C -0.18 -3.54 8.12 -26.70 -0.22 -3.76 16 21 C -0.23 -3.62 9.44 -39.79 -0.38 -3.99 16 22 C 0.03 0.47 5.89 -104.53 -0.62 -0.15 16 23 C -0.12 -1.67 8.71 36.00 0.31 -1.36 16 24 H 0.08 0.62 5.69 -51.93 -0.30 0.32 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.13 1.27 6.02 -52.49 -0.32 0.95 16 28 H 0.12 1.80 6.71 -52.49 -0.35 1.44 16 29 H 0.41 7.52 8.23 -40.82 -0.34 7.19 16 30 H 0.06 1.15 4.85 -51.93 -0.25 0.90 16 31 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 38 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 39 H 0.09 1.27 5.87 -51.93 -0.30 0.97 16 40 H 0.06 0.69 8.02 -51.93 -0.42 0.28 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -28.91 323.20 -8.04 -36.96 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.70 Total: 10.22 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.49 Total: -22.47 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.45 Total: -38.04 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.25 Total: 16.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.91 -8.04 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656649379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.535 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds