Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21317 * 119.99646 * 2 1 4 4 C 1.46751 * 120.00353 * 180.02562 * 2 1 3 5 5 C 1.40122 * 120.09531 * 5.84620 * 4 2 1 6 6 C 1.36523 * 119.90609 * 179.71684 * 5 4 2 7 7 C 1.39339 * 120.09125 * 0.51511 * 6 5 4 8 8 N 1.38891 * 119.90301 * 179.75523 * 7 6 5 9 9 C 1.46497 * 120.00342 * 6.46073 * 8 7 6 10 10 C 1.52999 * 109.47703 * 177.99105 * 9 8 7 11 11 C 1.50698 * 115.54713 * 300.87596 * 10 9 8 12 12 H 1.08003 * 120.00030 * 114.71646 * 11 10 9 13 13 C 1.37876 * 119.99806 * 294.70583 * 11 10 9 14 14 N 1.31519 * 119.99830 * 174.60184 * 13 11 10 15 15 Si 1.86792 * 120.00217 * 354.60227 * 13 11 10 16 16 H 1.48507 * 109.47381 * 88.85567 * 15 13 11 17 17 H 1.48499 * 109.47388 * 208.85790 * 15 13 11 18 18 H 1.48502 * 109.47314 * 328.85650 * 15 13 11 19 19 C 1.52998 * 117.49850 * 86.53771 * 10 9 8 20 20 C 1.52994 * 117.49917 * 155.20011 * 10 9 8 21 21 C 1.39298 * 120.19148 * 359.48769 * 7 6 5 22 22 C 1.36558 * 120.09436 * 0.24717 * 21 7 6 23 23 C 1.50697 * 120.04631 * 179.97438 * 22 21 7 24 24 H 1.09002 * 109.46916 * 185.13044 * 1 2 3 25 25 H 1.09004 * 109.47218 * 305.12203 * 1 2 3 26 26 H 1.08997 * 109.47478 * 65.12984 * 1 2 3 27 27 H 1.08001 * 120.04982 * 359.97438 * 5 4 2 28 28 H 1.07995 * 119.95874 * 180.25673 * 6 5 4 29 29 H 0.97001 * 119.99898 * 186.45719 * 8 7 6 30 30 H 1.09005 * 109.46795 * 57.99032 * 9 8 7 31 31 H 1.09000 * 109.46961 * 297.99533 * 9 8 7 32 32 H 0.97005 * 119.99655 * 180.02562 * 14 13 11 33 33 H 1.08999 * 117.50330 * 215.00742 * 19 10 9 34 34 H 1.09008 * 117.49420 * 0.02971 * 19 10 9 35 35 H 1.08998 * 117.50240 * 359.97438 * 20 10 9 36 36 H 1.08998 * 117.49832 * 144.97786 * 20 10 9 37 37 H 1.08001 * 119.94779 * 180.23522 * 21 7 6 38 38 H 1.09010 * 109.47158 * 96.85540 * 23 22 21 39 39 H 1.08998 * 109.47533 * 216.85382 * 23 22 21 40 40 H 1.09004 * 109.47423 * 336.85921 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2408 -1.2709 -0.0006 5 6 1.5477 -2.4824 -0.1246 6 6 2.2348 -3.6621 -0.1305 7 6 3.6223 -3.6631 -0.0026 8 7 4.3169 -4.8658 -0.0040 9 6 3.6108 -6.1192 -0.2808 10 6 4.6081 -7.2795 -0.2709 11 6 5.7335 -7.1776 -1.2679 12 1 6.7518 -7.0718 -0.9240 13 6 5.4632 -7.2198 -2.6193 14 7 6.4298 -7.0248 -3.4896 15 14 3.7243 -7.5538 -3.2140 16 1 2.9871 -6.2703 -3.3344 17 1 3.7741 -8.2222 -4.5391 18 1 3.0290 -8.4345 -2.2412 19 6 4.9155 -7.9353 1.0768 20 6 4.0649 -8.6753 0.0413 21 6 4.3153 -2.4611 0.1210 22 6 3.6363 -1.2763 0.1224 23 6 4.3870 0.0235 0.2568 24 1 -0.3633 -1.0236 0.0919 25 1 -0.3634 0.5912 0.8406 26 1 -0.3634 0.4322 -0.9323 27 1 0.4719 -2.4827 -0.2196 28 1 1.7019 -4.5961 -0.2302 29 1 5.2696 -4.8759 0.1783 30 1 3.1334 -6.0589 -1.2589 31 1 2.8523 -6.2855 0.4841 32 1 6.2395 -7.0540 -4.4404 33 1 5.9317 -8.2932 1.2423 34 1 4.4068 -7.5404 1.9563 35 1 2.9972 -8.7670 0.2401 36 1 4.5213 -9.5199 -0.4747 37 1 5.3911 -2.4662 0.2161 38 1 4.5524 0.4515 -0.7320 39 1 3.8043 0.7189 0.8608 40 1 5.3475 -0.1598 0.7386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000656649379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = -5.970981 kcal Electronic energy + Delta-G solvation = -20592.235174 eV Core-core repulsion = 17564.813962 eV Total energy + Delta-G solvation = -3027.421211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18340 -39.72859 -38.67918 -35.91178 -34.28862 -33.72863 -31.70563 -30.11311 -28.07162 -27.78753 -26.56141 -24.06569 -23.15890 -22.07863 -20.94995 -20.60060 -18.59359 -17.88725 -17.47542 -16.93549 -16.77715 -16.00484 -15.85558 -15.42555 -15.26118 -14.99324 -14.78221 -14.54619 -14.28298 -14.09823 -13.89090 -13.41903 -13.18612 -13.11512 -12.96731 -12.87144 -12.70377 -12.57478 -12.17094 -12.08946 -11.79298 -11.47392 -11.04949 -10.92167 -10.59274 -10.36413 -10.29598 -9.77386 -8.32304 -8.31490 -6.37455 -0.01645 0.56949 1.31930 1.38068 1.48459 1.63683 2.34770 2.46825 2.95896 3.02761 3.34980 3.39939 3.84589 3.94627 4.01136 4.27409 4.29270 4.36014 4.43608 4.45343 4.52965 4.61330 4.72181 4.72917 4.76848 4.80264 4.87160 4.91330 5.03698 5.08930 5.18441 5.22554 5.28898 5.36547 5.48108 5.51172 5.67151 5.72958 5.91912 6.25609 6.44551 6.68952 6.78332 6.81813 7.31669 8.83323 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.004578 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.176800 B = 6115.160928 C = 6139.268011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.396 3.604 3 O -0.510 6.510 4 C -0.274 4.274 5 C -0.004 4.004 6 C -0.239 4.239 7 C 0.252 3.748 8 N -0.711 5.711 9 C 0.159 3.841 10 C -0.044 4.044 11 C -0.480 4.480 12 H 0.032 0.968 13 C 0.026 3.974 14 N -0.947 5.947 15 Si 0.925 3.075 16 H -0.274 1.274 17 H -0.303 1.303 18 H -0.217 1.217 19 C -0.162 4.162 20 C -0.177 4.177 21 C -0.237 4.237 22 C 0.013 3.987 23 C -0.115 4.115 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.167 0.833 28 H 0.135 0.865 29 H 0.404 0.596 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 7.625 9.088 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.281 3.719 3 O -0.392 6.392 4 C -0.278 4.278 5 C -0.023 4.023 6 C -0.261 4.261 7 C 0.142 3.858 8 N -0.332 5.332 9 C 0.035 3.965 10 C -0.045 4.045 11 C -0.518 4.518 12 H 0.050 0.950 13 C -0.172 4.172 14 N -0.587 5.587 15 Si 0.750 3.250 16 H -0.200 1.200 17 H -0.230 1.230 18 H -0.139 1.139 19 C -0.199 4.199 20 C -0.215 4.215 21 C -0.260 4.260 22 C 0.012 3.988 23 C -0.171 4.171 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.184 0.816 28 H 0.153 0.847 29 H 0.239 0.761 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.005 7.920 8.876 18.375 hybrid contribution 0.699 -0.449 -0.920 1.239 sum -13.306 7.471 7.956 17.210 Atomic orbital electron populations 1.22233 0.91215 1.06211 1.05429 1.22692 0.93022 0.86795 0.69440 1.90457 1.72580 1.35657 1.40477 1.20218 0.93656 0.95690 1.18191 1.21242 1.00967 0.89752 0.90323 1.20626 0.91811 1.00090 1.13618 1.18480 0.92466 0.86078 0.88807 1.44791 1.11519 1.03564 1.73365 1.21066 0.93763 0.82916 0.98802 1.19456 0.97093 0.91174 0.96791 1.20364 0.92024 1.49452 0.89924 0.95022 1.25730 1.00720 0.93814 0.96911 1.70052 1.35123 1.51195 1.02284 0.86120 0.81329 0.79498 0.78045 1.19981 1.23023 1.13864 1.22853 1.00123 1.04521 0.92393 1.23076 0.99050 0.95803 1.03562 1.20313 0.99949 0.90846 1.14902 1.19829 0.93355 0.95022 0.90622 1.21020 0.99429 0.93970 1.02651 0.87941 0.88161 0.88021 0.81601 0.84738 0.76132 0.94218 0.90573 0.92784 0.90632 0.87814 0.87901 0.90542 0.86012 0.91399 0.89755 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 10.16 71.23 0.72 -2.07 16 2 C 0.40 9.69 7.15 27.91 0.20 9.89 16 3 O -0.51 -15.55 14.07 -3.15 -0.04 -15.60 16 4 C -0.27 -7.41 5.87 -20.15 -0.12 -7.53 16 5 C 0.00 -0.10 9.35 22.33 0.21 0.11 16 6 C -0.24 -6.71 9.25 22.13 0.20 -6.51 16 7 C 0.25 8.29 6.64 38.54 0.26 8.54 16 8 N -0.71 -25.28 5.55 -339.39 -1.88 -27.16 16 9 C 0.16 5.64 4.40 86.38 0.38 6.02 16 10 C -0.04 -1.77 0.90 -52.93 -0.05 -1.81 16 11 C -0.48 -25.10 8.95 25.60 0.23 -24.87 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 13 C 0.03 1.45 5.47 84.65 0.46 1.91 16 14 N -0.95 -57.54 13.96 21.45 0.30 -57.24 16 15 Si 0.93 41.61 25.01 68.60 1.72 43.32 16 16 H -0.27 -12.11 6.87 99.48 0.68 -11.42 16 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.22 -8.44 5.84 99.48 0.58 -7.86 16 19 C -0.16 -5.51 9.94 30.62 0.30 -5.21 16 20 C -0.18 -6.20 8.12 30.62 0.25 -5.95 16 21 C -0.24 -7.64 9.44 22.13 0.21 -7.43 16 22 C 0.01 0.40 5.89 -19.81 -0.12 0.28 16 23 C -0.11 -3.20 8.71 71.23 0.62 -2.58 16 24 H 0.10 1.01 5.69 -2.39 -0.01 1.00 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.17 2.44 6.02 -2.91 -0.02 2.43 16 28 H 0.13 3.42 6.71 -2.91 -0.02 3.40 16 29 H 0.40 15.12 8.23 -92.71 -0.76 14.36 16 30 H 0.04 1.53 4.85 -2.38 -0.01 1.52 16 31 H 0.08 2.23 7.75 -2.39 -0.02 2.21 16 32 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 35 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.12 3.82 8.04 -2.91 -0.02 3.80 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.08 2.42 5.87 -2.39 -0.01 2.41 16 40 H 0.07 1.66 8.02 -2.38 -0.02 1.64 16 Total: -1.00 -65.60 323.20 3.99 -61.61 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.14 Total: 32.27 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.76 Total: -37.21 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.58 Total: -84.40 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.04 Total: -15.60 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.72 Total: 43.32 kcal Total: -65.60 3.99 -61.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656649379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.640 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds