Wall clock time and date at job start Mon Mar 30 2020 01:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86798 * 119.99750 * 2 1 4 4 H 1.48503 * 109.47092 * 239.99673 * 3 2 1 5 5 H 1.48491 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46918 * 120.00025 * 3 2 1 7 7 C 1.40222 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99919 * 197.86606 * 7 2 1 9 9 C 1.41107 * 120.00056 * 17.87457 * 7 2 1 10 10 C 1.40893 * 120.10250 * 204.63272 * 9 7 2 11 11 C 1.36313 * 119.89551 * 180.02562 * 10 9 7 12 12 C 1.40020 * 120.10431 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89722 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99692 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00500 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00415 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47191 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47382 * 179.97438 * 17 16 15 19 19 C 1.53782 * 113.61538 * 85.85934 * 18 17 16 20 20 C 1.54051 * 86.98567 * 140.02070 * 19 18 17 21 21 C 1.53778 * 113.61678 * 183.47057 * 18 17 16 22 22 C 1.40008 * 120.20786 * 0.23433 * 12 11 10 23 23 C 1.36324 * 120.10944 * 359.47842 * 22 12 11 24 24 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.04986 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.95446 * 180.02562 * 11 10 9 27 27 H 0.97005 * 119.99568 * 359.97438 * 15 13 12 28 28 H 1.08999 * 109.46852 * 59.99842 * 16 15 13 29 29 H 1.09007 * 109.46606 * 299.99860 * 16 15 13 30 30 H 1.09005 * 109.46891 * 59.99970 * 17 16 15 31 31 H 1.08995 * 109.47050 * 299.99902 * 17 16 15 32 32 H 1.09000 * 112.84555 * 314.66935 * 18 17 16 33 33 H 1.08994 * 113.61929 * 254.62198 * 19 18 17 34 34 H 1.09004 * 113.61161 * 25.52159 * 19 18 17 35 35 H 1.08989 * 113.62379 * 220.02503 * 20 19 18 36 36 H 1.09000 * 113.68398 * 89.13154 * 20 19 18 37 37 H 1.08995 * 113.61622 * 334.48563 * 21 18 17 38 38 H 1.09005 * 113.61320 * 105.30262 * 21 18 17 39 39 H 1.07998 * 119.94619 * 179.71765 * 22 12 11 40 40 H 1.07993 * 120.05658 * 180.25516 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0486 -1.2368 0.2875 9 6 1.3531 -2.4071 -0.3740 10 6 1.8267 -3.6494 0.0923 11 6 1.1916 -4.7990 -0.2726 12 6 0.0705 -4.7466 -1.1099 13 6 -0.6136 -5.9946 -1.5027 14 8 -0.2035 -7.0657 -1.0988 15 7 -1.6925 -5.9468 -2.3089 16 6 -2.3716 -7.1851 -2.6982 17 6 -3.5558 -6.8529 -3.6082 18 6 -4.2647 -8.1462 -4.0154 19 6 -5.3189 -8.6170 -2.9995 20 6 -6.1964 -8.9950 -4.2079 21 6 -5.4236 -7.9290 -5.0026 22 6 -0.4006 -3.5149 -1.5801 23 6 0.2245 -2.3594 -1.2159 24 1 -0.4850 0.8401 -0.0004 25 1 2.6921 -3.6908 0.7371 26 1 1.5535 -5.7517 0.0846 27 1 -2.0199 -5.0922 -2.6308 28 1 -2.7319 -7.6977 -1.8063 29 1 -1.6732 -7.8304 -3.2310 30 1 -3.1958 -6.3401 -4.5002 31 1 -4.2540 -6.2078 -3.0750 32 1 -3.5720 -8.9304 -4.3208 33 1 -5.0004 -9.4728 -2.4045 34 1 -5.7330 -7.8103 -2.3946 35 1 -7.2517 -8.7586 -4.0723 36 1 -6.0330 -10.0111 -4.5669 37 1 -5.8663 -6.9347 -4.9444 38 1 -5.1890 -8.2287 -6.0240 39 1 -1.2629 -3.4798 -2.2294 40 1 -0.1421 -1.4095 -1.5759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759330583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:10 Heat of formation + Delta-G solvation = -23.209436 kcal Electronic energy + Delta-G solvation = -19703.051814 eV Core-core repulsion = 16674.883087 eV Total energy + Delta-G solvation = -3028.168727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.37494 -38.76844 -37.09321 -34.60128 -33.86133 -31.14932 -29.77289 -29.41834 -26.25967 -25.79548 -24.66322 -22.11279 -21.53943 -20.83361 -19.79667 -19.30553 -17.52140 -16.79583 -15.79122 -15.70919 -15.31293 -15.06721 -14.48348 -14.04131 -13.78684 -13.53596 -13.19121 -12.79938 -12.63636 -12.61718 -12.28494 -12.07785 -11.91007 -11.45530 -11.33438 -11.26359 -11.20450 -10.97422 -10.77478 -10.63324 -10.35573 -10.30406 -10.05354 -9.55155 -9.34153 -8.92943 -8.54569 -7.71363 -7.53376 -7.03197 -4.59812 2.25137 2.92617 2.94272 2.98490 3.04298 3.73895 3.82630 3.89460 4.39670 4.45513 4.57934 4.58973 4.66494 5.08796 5.30634 5.33707 5.47579 5.55994 5.57525 5.58550 5.68663 5.73894 5.78620 5.94417 6.01415 6.05704 6.17264 6.26132 6.33095 6.34897 6.77447 6.83157 6.97304 7.08536 7.14419 7.44177 7.66549 7.80287 7.86418 8.07742 8.27930 8.40241 8.63543 8.76023 9.11475 9.88866 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.003077 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.717968 B = 9096.323549 C = 9797.390377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.284 4.284 13 C 0.570 3.430 14 O -0.577 6.577 15 N -0.743 5.743 16 C 0.125 3.875 17 C -0.122 4.122 18 C -0.107 4.107 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.063 4.063 23 C -0.179 4.179 24 H 0.287 0.713 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.397 0.603 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -6.670 -7.728 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.289 4.289 13 C 0.365 3.635 14 O -0.459 6.459 15 N -0.396 5.396 16 C 0.001 3.999 17 C -0.160 4.160 18 C -0.126 4.126 19 C -0.176 4.176 20 C -0.181 4.181 21 C -0.175 4.175 22 C -0.082 4.082 23 C -0.198 4.198 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.232 0.768 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.480 -7.278 -7.428 14.072 hybrid contribution 0.066 1.207 -0.111 1.214 sum -9.414 -6.072 -7.540 13.503 Atomic orbital electron populations 1.69740 1.07907 1.30127 1.31781 1.26098 0.94815 1.01870 0.91900 0.86259 0.80203 0.79447 0.80347 1.18482 1.20065 1.18657 1.19814 0.98417 0.91201 1.37673 0.89751 1.17782 0.90387 0.92157 0.87148 1.20721 1.04626 0.92658 1.07881 1.20365 0.92929 0.97137 0.93702 1.18923 1.04521 0.91102 1.14348 1.18593 0.78723 0.89594 0.76596 1.90628 1.66611 1.31787 1.56914 1.45930 1.31875 1.09098 1.52738 1.21160 0.93173 0.87549 0.98020 1.21792 0.97072 0.97519 0.99583 1.22471 0.95499 0.97545 0.97051 1.23047 0.96891 1.01367 0.96319 1.22855 0.98845 0.99086 0.97353 1.22939 0.96910 0.99469 0.98144 1.20473 0.97373 0.92587 0.97753 1.20974 0.99965 0.96887 1.01972 0.90194 0.88383 0.88121 0.76848 0.92191 0.92303 0.91255 0.91251 0.89043 0.91466 0.90001 0.91655 0.90357 0.90087 0.91625 0.89347 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 2 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 3 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -11.07 9.04 -37.75 -0.34 -11.41 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.13 3.29 5.58 -106.80 -0.60 2.70 16 10 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 11 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.61 5.89 -104.73 -0.62 -7.23 16 13 C 0.57 12.45 7.76 -12.42 -0.10 12.36 16 14 O -0.58 -14.15 16.32 5.29 0.09 -14.06 16 15 N -0.74 -12.71 5.50 -61.31 -0.34 -13.05 16 16 C 0.13 1.78 5.67 -4.04 -0.02 1.76 16 17 C -0.12 -1.28 5.15 -26.73 -0.14 -1.42 16 18 C -0.11 -0.98 3.64 -89.81 -0.33 -1.31 16 19 C -0.14 -1.23 7.65 -25.78 -0.20 -1.43 16 20 C -0.14 -1.11 8.09 -25.78 -0.21 -1.32 16 21 C -0.14 -1.10 7.64 -25.92 -0.20 -1.30 16 22 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 23 C -0.18 -4.40 8.64 -39.27 -0.34 -4.74 16 24 H 0.29 6.19 8.29 -40.82 -0.34 5.86 16 25 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 26 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 27 H 0.40 6.02 6.47 -40.82 -0.26 5.75 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.74 7.92 -51.93 -0.41 0.32 16 35 H 0.06 0.47 8.14 -51.94 -0.42 0.05 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 40 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -28.33 332.23 -9.89 -38.22 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.92 Total: 10.16 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -4.30 Total: -20.62 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.27 Total: -30.96 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.33 -9.89 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759330583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.013 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds