Wall clock time and date at job start Mon Mar 30 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86798 * 119.99750 * 2 1 4 4 H 1.48503 * 109.47092 * 239.99673 * 3 2 1 5 5 H 1.48491 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46918 * 120.00025 * 3 2 1 7 7 C 1.40222 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99919 * 197.86606 * 7 2 1 9 9 C 1.41107 * 120.00056 * 17.87457 * 7 2 1 10 10 C 1.40893 * 120.10250 * 204.63272 * 9 7 2 11 11 C 1.36313 * 119.89551 * 180.02562 * 10 9 7 12 12 C 1.40020 * 120.10431 * 0.02562 * 11 10 9 13 13 C 1.47640 * 119.89722 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99692 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00500 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00415 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47191 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47382 * 179.97438 * 17 16 15 19 19 C 1.53782 * 113.61538 * 85.85934 * 18 17 16 20 20 C 1.54051 * 86.98567 * 140.02070 * 19 18 17 21 21 C 1.53778 * 113.61678 * 183.47057 * 18 17 16 22 22 C 1.40008 * 120.20786 * 0.23433 * 12 11 10 23 23 C 1.36324 * 120.10944 * 359.47842 * 22 12 11 24 24 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.04986 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.95446 * 180.02562 * 11 10 9 27 27 H 0.97005 * 119.99568 * 359.97438 * 15 13 12 28 28 H 1.08999 * 109.46852 * 59.99842 * 16 15 13 29 29 H 1.09007 * 109.46606 * 299.99860 * 16 15 13 30 30 H 1.09005 * 109.46891 * 59.99970 * 17 16 15 31 31 H 1.08995 * 109.47050 * 299.99902 * 17 16 15 32 32 H 1.09000 * 112.84555 * 314.66935 * 18 17 16 33 33 H 1.08994 * 113.61929 * 254.62198 * 19 18 17 34 34 H 1.09004 * 113.61161 * 25.52159 * 19 18 17 35 35 H 1.08989 * 113.62379 * 220.02503 * 20 19 18 36 36 H 1.09000 * 113.68398 * 89.13154 * 20 19 18 37 37 H 1.08995 * 113.61622 * 334.48563 * 21 18 17 38 38 H 1.09005 * 113.61320 * 105.30262 * 21 18 17 39 39 H 1.07998 * 119.94619 * 179.71765 * 22 12 11 40 40 H 1.07993 * 120.05658 * 180.25516 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0486 -1.2368 0.2875 9 6 1.3531 -2.4071 -0.3740 10 6 1.8267 -3.6494 0.0923 11 6 1.1916 -4.7990 -0.2726 12 6 0.0705 -4.7466 -1.1099 13 6 -0.6136 -5.9946 -1.5027 14 8 -0.2035 -7.0657 -1.0988 15 7 -1.6925 -5.9468 -2.3089 16 6 -2.3716 -7.1851 -2.6982 17 6 -3.5558 -6.8529 -3.6082 18 6 -4.2647 -8.1462 -4.0154 19 6 -5.3189 -8.6170 -2.9995 20 6 -6.1964 -8.9950 -4.2079 21 6 -5.4236 -7.9290 -5.0026 22 6 -0.4006 -3.5149 -1.5801 23 6 0.2245 -2.3594 -1.2159 24 1 -0.4850 0.8401 -0.0004 25 1 2.6921 -3.6908 0.7371 26 1 1.5535 -5.7517 0.0846 27 1 -2.0199 -5.0922 -2.6308 28 1 -2.7319 -7.6977 -1.8063 29 1 -1.6732 -7.8304 -3.2310 30 1 -3.1958 -6.3401 -4.5002 31 1 -4.2540 -6.2078 -3.0750 32 1 -3.5720 -8.9304 -4.3208 33 1 -5.0004 -9.4728 -2.4045 34 1 -5.7330 -7.8103 -2.3946 35 1 -7.2517 -8.7586 -4.0723 36 1 -6.0330 -10.0111 -4.5669 37 1 -5.8663 -6.9347 -4.9444 38 1 -5.1890 -8.2287 -6.0240 39 1 -1.2629 -3.4798 -2.2294 40 1 -0.1421 -1.4095 -1.5759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759330583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:08 Heat of formation + Delta-G solvation = -37.446393 kcal Electronic energy + Delta-G solvation = -19703.669175 eV Core-core repulsion = 16674.883087 eV Total energy + Delta-G solvation = -3028.786088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81720 -39.77723 -38.87035 -36.02199 -35.67062 -32.61200 -31.36808 -31.18801 -27.89166 -26.50722 -25.81770 -23.60448 -22.92424 -22.46669 -21.27097 -20.19100 -19.36666 -18.42620 -17.32014 -16.84646 -16.63362 -16.18596 -15.75281 -15.59924 -15.27059 -14.99456 -14.83525 -14.43038 -13.92978 -13.68405 -13.48563 -13.33209 -13.27414 -13.12737 -12.85191 -12.64050 -12.38200 -12.31472 -12.03853 -11.79441 -11.45299 -11.37115 -11.15289 -11.09132 -11.00760 -10.64068 -10.06119 -9.57744 -9.40685 -8.79439 -6.48475 0.44143 1.14698 1.39260 1.44893 1.52569 2.12234 2.18213 2.41590 2.78690 3.64261 3.68880 3.76446 3.87791 4.00301 4.14240 4.29148 4.31277 4.41319 4.44334 4.53543 4.66408 4.85552 4.91430 4.91948 4.92927 5.02551 5.04041 5.11218 5.15451 5.17084 5.22606 5.30055 5.44157 5.56829 5.61075 5.66206 5.82270 5.94520 5.99114 6.22460 6.53536 6.72116 6.76894 6.88871 7.44501 8.15706 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.003077 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.717968 B = 9096.323549 C = 9797.390377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.101 3.899 10 C -0.254 4.254 11 C -0.033 4.033 12 C -0.296 4.296 13 C 0.568 3.432 14 O -0.609 6.609 15 N -0.726 5.726 16 C 0.124 3.876 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.145 4.145 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.053 4.053 23 C -0.198 4.198 24 H 0.297 0.703 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.408 0.592 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -5.823 -8.919 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.098 3.902 10 C -0.274 4.274 11 C -0.053 4.053 12 C -0.300 4.300 13 C 0.362 3.638 14 O -0.494 6.494 15 N -0.378 5.378 16 C 0.001 3.999 17 C -0.148 4.148 18 C -0.129 4.129 19 C -0.182 4.182 20 C -0.177 4.177 21 C -0.169 4.169 22 C -0.072 4.072 23 C -0.218 4.218 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.245 0.755 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.747 -6.437 -8.643 15.220 hybrid contribution 0.391 0.867 0.264 0.988 sum -10.356 -5.570 -8.379 14.439 Atomic orbital electron populations 1.69757 1.09222 1.31726 1.31367 1.26933 0.95567 1.04826 0.90803 0.85150 0.78855 0.74935 0.80290 1.18225 1.18726 1.18310 1.20097 0.98794 0.92221 1.38954 0.89644 1.18142 0.91300 0.92838 0.87925 1.20864 1.05235 0.92773 1.08504 1.20511 0.93550 0.97016 0.94185 1.19203 1.04449 0.92269 1.14094 1.18452 0.79694 0.88494 0.77172 1.90607 1.67843 1.32561 1.58408 1.45815 1.30261 1.10840 1.50862 1.21342 0.94113 0.86135 0.98349 1.21735 0.95548 0.98492 0.99034 1.22498 0.95765 0.96807 0.97829 1.23091 0.97237 1.01231 0.96672 1.22852 0.99052 0.99392 0.96418 1.22927 0.95988 0.99835 0.98193 1.20731 0.97795 0.91416 0.97236 1.21024 1.00531 0.97438 1.02771 0.89124 0.87780 0.88054 0.75502 0.93078 0.92881 0.90291 0.90566 0.89145 0.91962 0.90145 0.90949 0.89790 0.89647 0.90904 0.85738 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.94 10.95 21.87 0.24 -37.70 16 2 C 0.04 1.75 5.14 85.35 0.44 2.19 16 3 Si 0.99 34.59 29.60 68.60 2.03 36.62 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.47 -23.95 9.04 23.46 0.21 -23.74 16 8 H 0.09 4.14 7.91 -2.91 -0.02 4.11 16 9 C 0.10 5.29 5.58 -21.28 -0.12 5.17 16 10 C -0.25 -12.79 9.73 22.47 0.22 -12.57 16 11 C -0.03 -1.64 9.52 22.25 0.21 -1.42 16 12 C -0.30 -13.73 5.89 -19.93 -0.12 -13.85 16 13 C 0.57 24.57 7.76 86.73 0.67 25.24 16 14 O -0.61 -30.01 16.32 -4.00 -0.07 -30.07 16 15 N -0.73 -23.74 5.50 -466.16 -2.57 -26.31 16 16 C 0.12 3.37 5.67 86.38 0.49 3.86 16 17 C -0.11 -2.08 5.15 30.59 0.16 -1.92 16 18 C -0.11 -1.81 3.64 -10.27 -0.04 -1.85 16 19 C -0.14 -2.34 7.65 31.21 0.24 -2.10 16 20 C -0.14 -1.86 8.09 31.21 0.25 -1.60 16 21 C -0.13 -1.78 7.64 31.12 0.24 -1.55 16 22 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 23 C -0.20 -9.81 8.64 22.47 0.19 -9.62 16 24 H 0.30 12.57 8.29 -92.71 -0.77 11.80 16 25 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 26 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 27 H 0.41 11.40 6.47 -92.70 -0.60 10.80 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.36 7.88 -2.39 -0.02 1.34 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.32 7.92 -2.39 -0.02 1.30 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.12 4.42 6.37 -2.91 -0.02 4.40 16 40 H 0.12 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -61.06 332.23 3.34 -57.72 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.43 Total: 35.61 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 3.26 Total: -35.88 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -2.33 Total: -64.01 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.07 Total: -30.07 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -61.06 3.34 -57.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759330583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.278 kcal (2) G-P(sol) polarization free energy of solvation -61.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds