Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47041 * 2 1 4 4 O 1.34447 * 124.92498 * 269.97577 * 3 2 1 5 5 C 1.34808 * 110.88969 * 180.02562 * 4 3 2 6 6 C 1.38948 * 133.49695 * 179.97438 * 5 4 3 7 7 C 1.37846 * 119.81448 * 179.97438 * 6 5 4 8 8 C 1.38745 * 120.68985 * 0.02562 * 7 6 5 9 9 C 1.36734 * 120.41411 * 0.02562 * 8 7 6 10 10 C 1.39403 * 119.71798 * 359.97438 * 9 8 7 11 11 C 1.33998 * 124.92308 * 89.98099 * 3 2 1 12 12 C 1.50701 * 126.90399 * 0.02562 * 11 3 2 13 13 N 1.46909 * 109.47409 * 270.00257 * 12 11 3 14 14 C 1.46892 * 110.99986 * 180.02562 * 13 12 11 15 15 H 1.08996 * 109.47475 * 35.00222 * 14 13 12 16 16 C 1.53002 * 109.47257 * 274.99857 * 14 13 12 17 17 C 1.50708 * 109.46922 * 154.99754 * 14 13 12 18 18 H 1.07991 * 119.99907 * 0.02562 * 17 14 13 19 19 C 1.37881 * 119.99925 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00128 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99893 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47066 * 90.00183 * 21 19 17 23 23 H 1.48494 * 109.47232 * 210.00384 * 21 19 17 24 24 H 1.48500 * 109.47013 * 330.00417 * 21 19 17 25 25 H 1.08998 * 109.47576 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47074 * 299.99681 * 1 2 3 27 27 H 1.09002 * 109.47506 * 59.99147 * 1 2 3 28 28 H 1.08999 * 109.46634 * 240.00474 * 2 1 3 29 29 H 1.08993 * 109.47317 * 120.00257 * 2 1 3 30 30 H 1.07993 * 120.08845 * 359.96242 * 6 5 4 31 31 H 1.08003 * 119.65310 * 180.27429 * 7 6 5 32 32 H 1.08004 * 119.79131 * 179.97438 * 8 7 6 33 33 H 1.08006 * 120.13634 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47399 * 30.00101 * 12 11 3 35 35 H 1.09000 * 109.47408 * 150.00464 * 12 11 3 36 36 H 1.00898 * 110.99593 * 56.04632 * 13 12 11 37 37 H 1.09001 * 109.46854 * 60.00098 * 16 14 13 38 38 H 1.09004 * 109.47173 * 180.02562 * 16 14 13 39 39 H 1.09004 * 109.46998 * 300.00242 * 16 14 13 40 40 H 0.96995 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2893 2.1464 -1.1023 5 6 2.7256 3.3793 -0.7754 6 6 3.1173 4.4842 -1.5213 7 6 3.5238 5.6348 -0.8802 8 6 3.5470 5.7029 0.5054 9 6 3.1665 4.6265 1.2578 10 6 2.7524 3.4542 0.6272 11 6 2.2877 2.1442 1.0987 12 6 2.1311 1.7010 2.5305 13 7 0.7741 2.0181 2.9957 14 6 0.5849 1.5999 4.3911 15 1 1.5156 1.7380 4.9413 16 6 0.1829 0.1242 4.4311 17 6 -0.5003 2.4335 5.0225 18 1 -0.9996 3.1972 4.4449 19 6 -0.8563 2.2204 6.3374 20 7 -0.2486 1.2900 7.0407 21 14 -2.2019 3.2532 7.1199 22 1 -3.5155 2.5911 6.9165 23 1 -1.9372 3.3913 8.5745 24 1 -2.2227 4.5981 6.4906 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.1036 4.4415 -2.6003 31 1 3.8235 6.4936 -1.4625 32 1 3.8684 6.6116 0.9927 33 1 3.1867 4.6843 2.3362 34 1 2.2963 0.6257 2.5982 35 1 2.8593 2.2205 3.1534 36 1 0.0792 1.6004 2.3952 37 1 0.9678 -0.4787 3.9744 38 1 0.0420 -0.1861 5.4666 39 1 -0.7479 -0.0139 3.8809 40 1 -0.4993 1.1398 7.9656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656871931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = 0.458384 kcal Electronic energy + Delta-G solvation = -20831.992129 eV Core-core repulsion = 17804.849716 eV Total energy + Delta-G solvation = -3027.142413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.46356 -38.82160 -38.12013 -35.67556 -34.28186 -33.24558 -31.44107 -30.56710 -29.24617 -27.25110 -25.94084 -25.02114 -23.70977 -22.31519 -22.11266 -20.85115 -18.56390 -17.95516 -17.72602 -17.25917 -16.73038 -16.41097 -15.94266 -15.40256 -15.24013 -15.04382 -14.75213 -14.64280 -14.16326 -13.71139 -13.63625 -13.51954 -13.17806 -12.97524 -12.86068 -12.79579 -12.68410 -12.47533 -12.23010 -12.15435 -12.03185 -11.91346 -11.68885 -11.07703 -10.82162 -10.48331 -9.55351 -9.08508 -8.89307 -8.09367 -6.20542 -0.01230 0.42669 1.30923 1.42324 1.43244 1.54314 1.73366 2.44297 2.80052 3.18577 3.43057 3.61481 3.78704 3.95114 4.04620 4.14175 4.18429 4.28137 4.37481 4.51277 4.57190 4.61538 4.65855 4.72626 4.77457 4.89513 4.95075 5.01087 5.06799 5.11019 5.26162 5.32930 5.39306 5.41500 5.51686 5.58313 5.69674 5.78528 5.82493 6.23325 6.27202 6.64165 6.80547 6.93897 7.49329 8.95752 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.005003 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.151311 B = 5595.289574 C = 6603.290196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.036 3.964 4 O -0.199 6.199 5 C 0.023 3.977 6 C -0.112 4.112 7 C -0.090 4.090 8 C -0.134 4.134 9 C -0.089 4.089 10 C -0.137 4.137 11 C -0.182 4.182 12 C 0.139 3.861 13 N -0.681 5.681 14 C 0.216 3.784 15 H 0.002 0.998 16 C -0.154 4.154 17 C -0.515 4.515 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.330 0.670 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 2.123 -17.193 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.013 4.013 4 O -0.102 6.102 5 C -0.024 4.024 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.152 4.152 9 C -0.107 4.107 10 C -0.138 4.138 11 C -0.183 4.183 12 C 0.011 3.989 13 N -0.313 5.313 14 C 0.108 3.892 15 H 0.020 0.980 16 C -0.214 4.214 17 C -0.554 4.554 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.134 0.866 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.919 2.615 -17.102 18.633 hybrid contribution -0.693 -0.550 1.048 1.371 sum 6.226 2.065 -16.054 17.342 Atomic orbital electron populations 1.21814 0.93132 1.03627 1.01952 1.20352 0.96971 0.85557 1.05412 1.22577 1.00287 0.95640 0.82761 1.83888 1.70127 1.22114 1.34034 1.20060 1.02433 0.86280 0.93609 1.20334 1.02562 0.89365 1.00791 1.21361 0.97744 0.97360 0.94330 1.21138 1.00826 0.98658 0.94580 1.20519 0.98010 0.91876 1.00337 1.20052 1.04493 0.95602 0.93649 1.20920 1.08150 0.93634 0.95621 1.20036 0.92202 0.97354 0.89347 1.60729 1.02349 1.64215 1.04000 1.18959 0.94822 0.91158 0.84267 0.97994 1.22219 0.98028 0.98777 1.02353 1.21406 1.19382 1.18107 0.96472 0.93220 1.25665 0.98816 0.96578 0.97588 1.69995 1.43202 1.33508 1.09358 0.85549 0.79503 0.79139 0.77361 1.19976 1.20816 1.19884 0.89241 0.93861 0.92090 0.87574 0.88360 0.82705 0.80956 0.82921 0.86631 0.94289 0.92437 0.85123 0.95259 0.91877 0.94847 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.89 71.98 0.71 -2.65 16 2 C -0.05 -1.06 6.23 29.85 0.19 -0.88 16 3 C 0.04 1.09 6.49 24.72 0.16 1.25 16 4 O -0.20 -6.19 10.58 -8.90 -0.09 -6.28 16 5 C 0.02 0.70 7.42 22.99 0.17 0.87 16 6 C -0.11 -2.59 10.07 22.35 0.23 -2.36 16 7 C -0.09 -1.77 10.01 22.30 0.22 -1.54 16 8 C -0.13 -3.13 9.98 22.04 0.22 -2.91 16 9 C -0.09 -2.79 10.05 22.20 0.22 -2.57 16 10 C -0.14 -4.71 6.38 -20.22 -0.13 -4.84 16 11 C -0.18 -6.37 5.86 -18.59 -0.11 -6.48 16 12 C 0.14 5.36 5.78 85.56 0.49 5.85 16 13 N -0.68 -30.18 6.22 -499.45 -3.11 -33.28 16 14 C 0.22 11.11 2.57 44.17 0.11 11.22 16 15 H 0.00 0.12 7.80 -2.39 -0.02 0.10 16 16 C -0.15 -7.34 8.94 71.98 0.64 -6.70 16 17 C -0.52 -29.18 8.84 25.60 0.23 -28.95 16 18 H 0.05 2.87 7.81 -2.92 -0.02 2.85 16 19 C 0.01 0.66 5.30 84.66 0.45 1.11 16 20 N -0.92 -53.14 11.32 21.45 0.24 -52.90 16 21 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.19 6.29 -2.38 -0.01 1.18 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.10 2.22 7.06 -2.39 -0.02 2.20 16 30 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.12 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.04 1.40 6.38 -2.39 -0.02 1.39 16 35 H 0.06 2.34 8.05 -2.39 -0.02 2.33 16 36 H 0.33 13.86 6.61 -89.70 -0.59 13.26 16 37 H 0.03 1.20 7.45 -2.39 -0.02 1.19 16 38 H 0.06 3.36 6.07 -2.38 -0.01 3.34 16 39 H 0.03 1.50 8.13 -2.38 -0.02 1.48 16 40 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -65.91 329.43 3.32 -62.59 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.45 Total: 22.94 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 3.81 Total: -39.58 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.86 Total: -86.19 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.09 Total: -6.28 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.91 3.32 -62.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656871931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.048 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds