Wall clock time and date at job start Mon Mar 30 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47024 * 2 1 4 4 N 1.46494 * 109.47390 * 184.88943 * 3 2 1 5 5 C 1.36874 * 120.00383 * 97.60978 * 4 3 2 6 6 H 1.08001 * 120.00013 * 228.81479 * 5 4 3 7 7 C 1.39041 * 119.99984 * 48.53840 * 5 4 3 8 8 N 1.31363 * 120.00399 * 191.86993 * 7 5 4 9 9 Si 1.86806 * 119.99952 * 11.86763 * 7 5 4 10 10 H 1.48497 * 109.47108 * 53.92401 * 9 7 5 11 11 H 1.48505 * 109.47094 * 173.92612 * 9 7 5 12 12 H 1.48499 * 109.46865 * 293.92438 * 9 7 5 13 13 C 1.34778 * 120.00089 * 277.61002 * 4 3 2 14 14 O 1.21597 * 119.99849 * 3.13256 * 13 4 3 15 15 C 1.47723 * 120.00634 * 183.13439 * 13 4 3 16 16 C 1.39668 * 120.18957 * 26.21890 * 15 13 4 17 17 C 1.37777 * 119.77695 * 179.97438 * 16 15 13 18 18 C 1.38686 * 120.42504 * 0.02562 * 17 16 15 19 19 C 1.38396 * 120.08355 * 359.97438 * 18 17 16 20 20 C 1.38213 * 120.00371 * 359.74797 * 19 18 17 21 21 C 1.51399 * 109.73814 * 179.97438 * 19 18 17 22 22 C 1.54339 * 105.17552 * 342.78009 * 21 19 18 23 23 C 1.51420 * 130.21722 * 179.97438 * 18 17 16 24 24 H 1.09007 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47410 * 299.99772 * 1 2 3 26 26 H 1.08999 * 109.47138 * 60.00437 * 1 2 3 27 27 H 1.09001 * 109.47087 * 240.00028 * 2 1 3 28 28 H 1.08997 * 109.46988 * 120.00082 * 2 1 3 29 29 H 1.09008 * 109.47301 * 64.88557 * 3 2 1 30 30 H 1.09003 * 109.47706 * 304.88981 * 3 2 1 31 31 H 0.96998 * 120.00749 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.11013 * 359.97438 * 16 15 13 33 33 H 1.08008 * 119.79010 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.95102 * 180.28026 * 20 19 18 35 35 H 1.09003 * 110.30137 * 223.85675 * 21 19 18 36 36 H 1.08999 * 110.38801 * 101.74765 * 21 19 18 37 37 H 1.09000 * 110.81634 * 268.18403 * 22 21 19 38 38 H 1.08997 * 110.98484 * 144.72420 * 22 21 19 39 39 H 1.09001 * 110.29779 * 316.15692 * 23 18 17 40 40 H 1.09000 * 110.30160 * 78.29581 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5002 1.4442 -0.1177 5 6 4.0882 1.6353 -1.3389 6 1 4.8680 0.9671 -1.6732 7 6 3.6775 2.6862 -2.1514 8 7 4.0654 2.7374 -3.4054 9 14 2.5740 4.0255 -1.4598 10 1 3.1946 4.5960 -0.2373 11 1 2.4011 5.0969 -2.4734 12 1 1.2490 3.4481 -1.1189 13 6 4.2647 1.2576 0.9764 14 8 3.7430 1.0312 2.0512 15 6 5.7364 1.3283 0.8702 16 6 6.3320 2.0882 -0.1391 17 6 7.7055 2.1485 -0.2300 18 6 8.5001 1.4592 0.6737 19 6 7.9162 0.7044 1.6761 20 6 6.5395 0.6411 1.7806 21 6 8.9924 0.0567 2.5213 22 6 10.2778 0.1383 1.6709 23 6 10.0079 1.3691 0.7795 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7498 1.9304 0.9306 30 1 1.6069 1.9810 -0.8429 31 1 3.7786 3.4703 -3.9724 32 1 5.7180 2.6267 -0.8458 33 1 8.1663 2.7358 -1.0106 34 1 6.0847 0.0555 2.5659 35 1 8.7387 -0.9837 2.7244 36 1 9.1217 0.6031 3.4555 37 1 10.3993 -0.7598 1.0653 38 1 11.1527 0.3004 2.3004 39 1 10.4483 1.2248 -0.2071 40 1 10.4088 2.2693 1.2454 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044379574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:38 Heat of formation + Delta-G solvation = -10.076545 kcal Electronic energy + Delta-G solvation = -21195.384788 eV Core-core repulsion = 18167.785547 eV Total energy + Delta-G solvation = -3027.599242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85017 -38.59792 -35.38884 -34.98824 -33.04415 -31.67279 -30.88625 -28.80554 -27.02297 -25.94525 -24.90628 -22.41551 -21.22987 -20.90175 -20.49181 -18.97546 -17.37931 -16.12835 -15.60408 -15.49106 -15.01132 -14.41416 -14.33982 -14.21426 -13.71026 -13.33631 -12.98693 -12.75222 -12.62019 -12.53761 -12.37254 -12.05204 -11.69316 -11.59035 -11.37665 -11.08073 -11.03331 -10.93129 -10.89294 -10.63778 -10.34688 -10.21226 -10.11861 -9.61560 -9.17468 -8.62491 -8.20792 -7.87873 -7.70689 -6.53860 -4.23809 1.64433 2.05515 2.99955 3.15940 3.21041 3.71482 4.05194 4.29569 4.54146 4.73653 4.81778 4.90739 5.09237 5.43931 5.54087 5.59726 5.60142 5.64038 5.81296 5.83762 5.85498 5.93107 5.94917 5.99043 6.11224 6.22372 6.26369 6.35463 6.36121 6.38690 6.45324 6.61777 6.71521 6.79948 6.90144 7.06836 7.18735 7.30433 7.37186 7.65572 8.02422 8.20399 8.86395 9.24514 9.61553 10.54285 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.006160 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.721643 B = 4544.622584 C = 5463.747949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.090 3.910 4 N -0.463 5.463 5 C -0.339 4.339 6 H 0.105 0.895 7 C 0.066 3.934 8 N -0.861 5.861 9 Si 0.871 3.129 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.255 1.255 13 C 0.526 3.474 14 O -0.592 6.592 15 C -0.106 4.106 16 C -0.062 4.062 17 C -0.130 4.130 18 C -0.091 4.091 19 C -0.128 4.128 20 C -0.064 4.064 21 C -0.075 4.075 22 C -0.120 4.120 23 C -0.081 4.081 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.278 0.722 32 H 0.174 0.826 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -1.966 5.246 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.032 4.032 4 N -0.182 5.182 5 C -0.467 4.467 6 H 0.122 0.878 7 C -0.142 4.142 8 N -0.495 5.495 9 Si 0.698 3.302 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.181 1.181 13 C 0.317 3.683 14 O -0.477 6.477 15 C -0.109 4.109 16 C -0.080 4.080 17 C -0.148 4.148 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.083 4.083 21 C -0.112 4.112 22 C -0.157 4.157 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.191 0.809 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.795 -1.964 5.544 8.257 hybrid contribution -0.586 0.701 -0.006 0.914 sum 5.209 -1.264 5.538 7.707 Atomic orbital electron populations 1.21697 0.96382 1.00964 1.01339 1.21771 0.94817 0.98128 1.02387 1.22105 0.82613 0.96865 1.01663 1.43573 1.03766 1.63889 1.07010 1.19052 1.22399 1.13202 0.91999 0.87752 1.25485 0.96599 0.97173 0.94958 1.69657 1.43374 1.31798 1.04702 0.87267 0.81888 0.81589 0.79501 1.18849 1.21247 1.18114 1.18418 0.86690 0.79728 0.83477 1.90620 1.74892 1.54035 1.28184 1.19790 0.93458 1.00538 0.97140 1.22587 0.94157 0.95532 0.95694 1.20675 0.93631 1.01189 0.99318 1.20694 0.95086 0.97542 0.95840 1.20288 0.93288 1.00992 0.98232 1.20589 0.91571 0.98226 0.97943 1.20942 0.92420 1.00285 0.97602 1.22270 0.97224 0.98222 0.98002 1.21032 0.92190 0.98355 1.00212 0.93129 0.93124 0.92967 0.91529 0.91968 0.92181 0.89767 0.91201 0.80939 0.86557 0.86250 0.91245 0.90858 0.91194 0.91038 0.91031 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.13 -2.58 6.18 -26.73 -0.17 -2.75 16 3 C 0.09 1.98 3.68 -4.05 -0.01 1.97 16 4 N -0.46 -11.15 2.03 -115.93 -0.23 -11.38 16 5 C -0.34 -8.51 6.25 -15.00 -0.09 -8.60 16 6 H 0.11 2.82 7.20 -52.49 -0.38 2.45 16 7 C 0.07 1.65 4.83 -17.45 -0.08 1.57 16 8 N -0.86 -22.56 13.95 55.50 0.77 -21.78 16 9 Si 0.87 19.59 25.96 -169.99 -4.41 15.18 16 10 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.26 -5.41 5.52 56.52 0.31 -5.10 16 13 C 0.53 12.85 7.39 -12.38 -0.09 12.76 16 14 O -0.59 -15.31 16.17 5.28 0.09 -15.22 16 15 C -0.11 -2.37 5.61 -105.02 -0.59 -2.96 16 16 C -0.06 -1.32 8.05 -39.22 -0.32 -1.64 16 17 C -0.13 -2.40 10.02 -39.58 -0.40 -2.80 16 18 C -0.09 -1.52 6.14 -104.04 -0.64 -2.16 16 19 C -0.13 -2.18 6.12 -104.23 -0.64 -2.82 16 20 C -0.06 -1.27 9.59 -39.12 -0.38 -1.64 16 21 C -0.08 -0.98 6.77 -26.84 -0.18 -1.16 16 22 C -0.12 -1.32 7.08 -25.33 -0.18 -1.50 16 23 C -0.08 -1.02 6.77 -26.83 -0.18 -1.20 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.27 7.95 -51.93 -0.41 0.85 16 29 H 0.06 1.33 7.71 -51.92 -0.40 0.93 16 30 H 0.08 1.86 3.82 -51.93 -0.20 1.66 16 31 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.17 4.04 4.81 -52.49 -0.25 3.78 16 33 H 0.12 1.92 8.06 -52.48 -0.42 1.49 16 34 H 0.12 2.31 7.86 -52.49 -0.41 1.90 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -27.89 319.37 -8.48 -36.37 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.93 Total: 6.90 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.58 Total: -14.87 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.54 Total: -33.16 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.41 Total: 15.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.89 -8.48 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.293 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds