Wall clock time and date at job start Mon Mar 30 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47024 * 2 1 4 4 N 1.46494 * 109.47390 * 184.88943 * 3 2 1 5 5 C 1.36874 * 120.00383 * 97.60978 * 4 3 2 6 6 H 1.08001 * 120.00013 * 228.81479 * 5 4 3 7 7 C 1.39041 * 119.99984 * 48.53840 * 5 4 3 8 8 N 1.31363 * 120.00399 * 191.86993 * 7 5 4 9 9 Si 1.86806 * 119.99952 * 11.86763 * 7 5 4 10 10 H 1.48497 * 109.47108 * 53.92401 * 9 7 5 11 11 H 1.48505 * 109.47094 * 173.92612 * 9 7 5 12 12 H 1.48499 * 109.46865 * 293.92438 * 9 7 5 13 13 C 1.34778 * 120.00089 * 277.61002 * 4 3 2 14 14 O 1.21597 * 119.99849 * 3.13256 * 13 4 3 15 15 C 1.47723 * 120.00634 * 183.13439 * 13 4 3 16 16 C 1.39668 * 120.18957 * 26.21890 * 15 13 4 17 17 C 1.37777 * 119.77695 * 179.97438 * 16 15 13 18 18 C 1.38686 * 120.42504 * 0.02562 * 17 16 15 19 19 C 1.38396 * 120.08355 * 359.97438 * 18 17 16 20 20 C 1.38213 * 120.00371 * 359.74797 * 19 18 17 21 21 C 1.51399 * 109.73814 * 179.97438 * 19 18 17 22 22 C 1.54339 * 105.17552 * 342.78009 * 21 19 18 23 23 C 1.51420 * 130.21722 * 179.97438 * 18 17 16 24 24 H 1.09007 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47410 * 299.99772 * 1 2 3 26 26 H 1.08999 * 109.47138 * 60.00437 * 1 2 3 27 27 H 1.09001 * 109.47087 * 240.00028 * 2 1 3 28 28 H 1.08997 * 109.46988 * 120.00082 * 2 1 3 29 29 H 1.09008 * 109.47301 * 64.88557 * 3 2 1 30 30 H 1.09003 * 109.47706 * 304.88981 * 3 2 1 31 31 H 0.96998 * 120.00749 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.11013 * 359.97438 * 16 15 13 33 33 H 1.08008 * 119.79010 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.95102 * 180.28026 * 20 19 18 35 35 H 1.09003 * 110.30137 * 223.85675 * 21 19 18 36 36 H 1.08999 * 110.38801 * 101.74765 * 21 19 18 37 37 H 1.09000 * 110.81634 * 268.18403 * 22 21 19 38 38 H 1.08997 * 110.98484 * 144.72420 * 22 21 19 39 39 H 1.09001 * 110.29779 * 316.15692 * 23 18 17 40 40 H 1.09000 * 110.30160 * 78.29581 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5002 1.4442 -0.1177 5 6 4.0882 1.6353 -1.3389 6 1 4.8680 0.9671 -1.6732 7 6 3.6775 2.6862 -2.1514 8 7 4.0654 2.7374 -3.4054 9 14 2.5740 4.0255 -1.4598 10 1 3.1946 4.5960 -0.2373 11 1 2.4011 5.0969 -2.4734 12 1 1.2490 3.4481 -1.1189 13 6 4.2647 1.2576 0.9764 14 8 3.7430 1.0312 2.0512 15 6 5.7364 1.3283 0.8702 16 6 6.3320 2.0882 -0.1391 17 6 7.7055 2.1485 -0.2300 18 6 8.5001 1.4592 0.6737 19 6 7.9162 0.7044 1.6761 20 6 6.5395 0.6411 1.7806 21 6 8.9924 0.0567 2.5213 22 6 10.2778 0.1383 1.6709 23 6 10.0079 1.3691 0.7795 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7498 1.9304 0.9306 30 1 1.6069 1.9810 -0.8429 31 1 3.7786 3.4703 -3.9724 32 1 5.7180 2.6267 -0.8458 33 1 8.1663 2.7358 -1.0106 34 1 6.0847 0.0555 2.5659 35 1 8.7387 -0.9837 2.7244 36 1 9.1217 0.6031 3.4555 37 1 10.3993 -0.7598 1.0653 38 1 11.1527 0.3004 2.3004 39 1 10.4483 1.2248 -0.2071 40 1 10.4088 2.2693 1.2454 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044379574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:37 Heat of formation + Delta-G solvation = -23.862401 kcal Electronic energy + Delta-G solvation = -21195.982588 eV Core-core repulsion = 18167.785547 eV Total energy + Delta-G solvation = -3028.197041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43984 -40.19756 -37.22943 -36.39615 -34.74358 -33.51237 -32.30656 -30.17938 -28.25737 -27.58723 -26.74079 -23.83404 -22.76397 -22.49594 -21.60108 -20.80363 -19.16581 -17.91672 -17.33225 -16.70144 -16.33417 -16.17125 -16.06500 -15.75551 -15.34675 -14.96943 -14.59424 -14.34618 -14.07971 -14.03235 -13.65186 -13.39240 -13.30886 -13.21008 -12.76254 -12.59936 -12.54322 -12.34794 -12.07249 -11.97802 -11.91660 -11.71221 -11.57372 -11.37732 -11.04283 -10.51849 -9.79068 -9.57404 -9.33141 -8.51298 -6.23530 0.08183 0.54868 1.17878 1.30640 1.37148 1.95319 2.15839 2.55605 2.77574 3.08691 3.58648 3.70642 3.95751 4.10197 4.13405 4.20751 4.24830 4.29672 4.40154 4.44629 4.58203 4.65038 4.67503 4.75776 4.87100 4.92959 4.96082 5.00971 5.09469 5.13891 5.20821 5.23015 5.30445 5.33949 5.40054 5.51791 5.57991 5.68877 5.72254 6.02879 6.12787 6.22103 6.89374 7.29506 7.68483 8.60071 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.006160 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.721643 B = 4544.622584 C = 5463.747949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.084 3.916 4 N -0.469 5.469 5 C -0.330 4.330 6 H 0.075 0.925 7 C 0.038 3.962 8 N -0.892 5.892 9 Si 0.911 3.089 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.232 1.232 13 C 0.517 3.483 14 O -0.615 6.615 15 C -0.140 4.140 16 C -0.080 4.080 17 C -0.136 4.136 18 C -0.085 4.085 19 C -0.128 4.128 20 C -0.075 4.075 21 C -0.076 4.076 22 C -0.111 4.111 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.282 0.718 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.538 -2.146 6.134 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.038 4.038 4 N -0.189 5.189 5 C -0.458 4.458 6 H 0.093 0.907 7 C -0.167 4.167 8 N -0.528 5.528 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.157 1.157 13 C 0.309 3.691 14 O -0.502 6.502 15 C -0.143 4.143 16 C -0.099 4.099 17 C -0.153 4.153 18 C -0.085 4.085 19 C -0.128 4.128 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.148 4.148 23 C -0.117 4.117 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.235 -2.154 6.419 9.909 hybrid contribution -0.900 0.716 -0.241 1.175 sum 6.335 -1.438 6.179 8.965 Atomic orbital electron populations 1.21662 0.93029 1.02813 1.02181 1.21698 0.97702 0.95967 1.01097 1.22252 0.81487 0.98655 1.01422 1.43683 1.04741 1.63882 1.06560 1.18704 1.21992 1.12897 0.92187 0.90725 1.25872 0.97659 0.98261 0.94910 1.69710 1.44774 1.32706 1.05631 0.86612 0.81601 0.79740 0.78447 1.20407 1.20243 1.15687 1.18879 0.87913 0.79107 0.83190 1.90571 1.75637 1.55229 1.28781 1.19787 0.92521 1.02903 0.99075 1.22296 0.95529 0.96409 0.95630 1.20856 0.92594 1.01614 1.00284 1.21260 0.97830 0.95318 0.94141 1.20839 0.92858 1.00322 0.98751 1.20680 0.93017 0.98283 0.97473 1.21104 0.91694 1.00649 0.97871 1.22318 0.97163 0.97593 0.97735 1.21192 0.88492 1.00173 1.01822 0.90848 0.92177 0.92197 0.92681 0.93340 0.92375 0.89677 0.90759 0.83632 0.84858 0.86545 0.90239 0.89174 0.90621 0.87747 0.89551 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.91 71.98 0.71 -3.45 16 2 C -0.13 -4.95 6.18 30.59 0.19 -4.76 16 3 C 0.08 3.74 3.68 86.38 0.32 4.06 16 4 N -0.47 -23.52 2.03 -638.96 -1.29 -24.81 16 5 C -0.33 -17.35 6.25 84.10 0.53 -16.82 16 6 H 0.08 4.32 7.20 -2.91 -0.02 4.30 16 7 C 0.04 1.97 4.83 84.96 0.41 2.38 16 8 N -0.89 -47.94 13.95 21.68 0.30 -47.63 16 9 Si 0.91 40.56 25.96 68.60 1.78 42.34 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.23 -9.42 5.52 99.48 0.55 -8.87 16 13 C 0.52 26.46 7.39 86.75 0.64 27.10 16 14 O -0.61 -33.02 16.17 -4.02 -0.07 -33.09 16 15 C -0.14 -6.53 5.61 -20.12 -0.11 -6.64 16 16 C -0.08 -3.60 8.05 22.51 0.18 -3.42 16 17 C -0.14 -5.01 10.02 22.27 0.22 -4.78 16 18 C -0.09 -2.68 6.14 -19.49 -0.12 -2.80 16 19 C -0.13 -4.18 6.12 -19.61 -0.12 -4.30 16 20 C -0.08 -3.04 9.59 22.57 0.22 -2.83 16 21 C -0.08 -1.71 6.77 30.52 0.21 -1.51 16 22 C -0.11 -1.92 7.08 31.50 0.22 -1.69 16 23 C -0.08 -1.68 6.77 30.53 0.21 -1.48 16 24 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.01 7.95 -2.39 -0.02 1.99 16 29 H 0.06 2.59 7.71 -2.38 -0.02 2.58 16 30 H 0.09 3.74 3.82 -2.39 -0.01 3.73 16 31 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.15 7.26 4.81 -2.91 -0.01 7.25 16 33 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.12 4.64 7.86 -2.91 -0.02 4.62 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -63.03 319.37 5.30 -57.74 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.87 Total: 26.40 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.70 Total: -20.94 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -0.99 Total: -72.45 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.07 Total: -33.09 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.78 Total: 42.34 kcal Total: -63.03 5.30 -57.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.874 kcal (2) G-P(sol) polarization free energy of solvation -63.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds