Wall clock time and date at job start Mon Mar 30 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 N 1.46502 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99928 * 264.51175 * 4 3 2 6 6 H 1.07994 * 119.99617 * 147.13329 * 5 4 3 7 7 C 1.38812 * 120.00143 * 327.14137 * 5 4 3 8 8 N 1.31622 * 119.99670 * 336.78788 * 7 5 4 9 9 Si 1.86796 * 119.99929 * 156.79144 * 7 5 4 10 10 H 1.48497 * 109.47291 * 89.99797 * 9 7 5 11 11 H 1.48504 * 109.47180 * 209.99646 * 9 7 5 12 12 H 1.48498 * 109.47073 * 329.99573 * 9 7 5 13 13 C 1.46496 * 120.00014 * 84.51833 * 4 3 2 14 14 H 1.09000 * 109.47384 * 359.97438 * 13 4 3 15 15 C 1.53003 * 109.47449 * 119.99847 * 13 4 3 16 16 C 1.50707 * 109.47067 * 239.99934 * 13 4 3 17 17 C 1.33987 * 124.92343 * 139.99903 * 16 13 4 18 18 C 1.46782 * 106.18703 * 179.97438 * 17 16 13 19 19 C 1.39409 * 134.37279 * 179.97438 * 18 17 16 20 20 C 1.36730 * 119.71543 * 180.02562 * 19 18 17 21 21 C 1.38744 * 120.41894 * 0.02562 * 20 19 18 22 22 C 1.37845 * 120.68516 * 0.02562 * 21 20 19 23 23 C 1.38935 * 119.81971 * 359.97438 * 22 21 20 24 24 O 1.34446 * 124.91879 * 319.97009 * 16 13 4 25 25 H 1.09005 * 109.46481 * 299.99805 * 1 2 3 26 26 H 1.09000 * 109.47156 * 59.99254 * 1 2 3 27 27 H 1.08997 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46481 * 240.00195 * 2 1 3 29 29 H 1.09002 * 109.47501 * 120.00339 * 2 1 3 30 30 H 1.09002 * 109.46768 * 60.00318 * 3 2 1 31 31 H 1.09002 * 109.47098 * 300.00586 * 3 2 1 32 32 H 0.97007 * 119.99768 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47150 * 179.97438 * 15 13 4 34 34 H 1.09002 * 109.46810 * 299.99724 * 15 13 4 35 35 H 1.09000 * 109.46761 * 59.99699 * 15 13 4 36 36 H 1.08000 * 126.90835 * 0.02562 * 17 16 13 37 37 H 1.07997 * 120.14008 * 0.03393 * 19 18 17 38 38 H 1.08002 * 119.79420 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.65853 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.08906 * 179.70344 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5556 1.1796 6 1 5.1406 1.0575 1.3021 7 6 3.6632 2.3105 2.2185 8 7 2.7895 3.2613 1.9636 9 14 4.1941 1.9770 3.9781 10 1 5.3790 2.8105 4.3041 11 1 3.0822 2.3140 4.9030 12 1 4.5431 0.5412 4.1261 13 6 4.2370 1.3213 -1.2638 14 1 3.5284 1.2419 -2.0882 15 6 5.1166 2.5571 -1.4641 16 6 5.1034 0.0888 -1.2263 17 6 5.2896 -0.7496 -2.2547 18 6 6.1985 -1.7955 -1.7707 19 6 6.7670 -2.9336 -2.3409 20 6 7.5980 -3.7225 -1.5950 21 6 7.8779 -3.3975 -0.2755 22 6 7.3243 -2.2768 0.3056 23 6 6.4772 -1.4616 -0.4348 24 8 5.8020 -0.3285 -0.1560 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.4215 3.7891 2.6896 33 1 5.6615 2.4668 -2.4038 34 1 4.4899 3.4486 -1.4914 35 1 5.8252 2.6361 -0.6397 36 1 4.8582 -0.6711 -3.2418 37 1 6.5519 -3.1909 -3.3675 38 1 8.0394 -4.6043 -2.0356 39 1 8.5363 -4.0292 0.3024 40 1 7.5449 -2.0355 1.3350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053643411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:26 Heat of formation + Delta-G solvation = 39.829343 kcal Electronic energy + Delta-G solvation = -21388.613075 eV Core-core repulsion = 18363.177915 eV Total energy + Delta-G solvation = -3025.435160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86972 -37.65743 -36.44132 -33.21829 -32.39929 -31.73982 -30.04018 -29.29321 -27.87869 -25.58261 -23.90865 -22.72265 -22.09937 -21.03783 -20.29294 -19.74459 -17.08182 -16.74833 -16.07502 -15.50085 -15.04114 -14.69287 -14.14909 -14.07799 -13.78955 -13.44014 -13.12272 -12.82618 -12.69607 -12.40011 -12.02260 -11.70461 -11.62417 -11.51175 -11.31222 -11.14157 -10.79489 -10.73189 -10.59776 -10.54750 -10.35775 -10.03134 -9.80636 -9.58453 -9.51730 -8.49238 -8.23453 -7.64677 -6.72329 -5.83757 -3.34357 1.29632 1.71055 2.92716 3.32273 3.38495 3.43379 3.49197 4.03918 4.46274 4.82428 5.04316 5.14688 5.25030 5.32633 5.47940 5.57600 5.68457 5.74293 5.83339 5.91633 5.96113 6.07811 6.14589 6.16515 6.22585 6.44222 6.50237 6.54853 6.60496 6.61157 6.67235 6.73173 6.84469 6.86764 6.92222 7.04642 7.12825 7.25177 7.71786 7.83255 7.91535 8.46860 9.15359 9.75276 10.29140 11.18395 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.006534 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.756315 B = 4284.372837 C = 4906.193232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.142 3.858 4 N -0.571 5.571 5 C -0.252 4.252 6 H 0.076 0.924 7 C 0.011 3.989 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.227 3.773 14 H 0.084 0.916 15 C -0.147 4.147 16 C 0.087 3.913 17 C -0.258 4.258 18 C -0.120 4.120 19 C -0.083 4.083 20 C -0.144 4.144 21 C -0.112 4.112 22 C -0.103 4.103 23 C 0.038 3.962 24 O -0.159 6.159 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.022 0.978 32 H 0.254 0.746 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -8.759 -7.325 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.017 3.983 4 N -0.289 5.289 5 C -0.381 4.381 6 H 0.093 0.907 7 C -0.189 4.189 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.117 3.883 14 H 0.102 0.898 15 C -0.206 4.206 16 C 0.035 3.965 17 C -0.278 4.278 18 C -0.121 4.121 19 C -0.101 4.101 20 C -0.162 4.162 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.010 4.010 24 O -0.058 6.058 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.966 -8.468 -6.918 11.632 hybrid contribution 0.218 -0.352 0.789 0.891 sum 4.184 -8.820 -6.129 11.527 Atomic orbital electron populations 1.21686 0.97388 0.99978 1.01135 1.22119 0.93835 1.01535 1.00674 1.21146 0.82561 0.92311 1.02295 1.44074 1.01159 1.83039 1.00616 1.19238 1.05597 1.23990 0.89266 0.90682 1.25031 0.99643 0.95169 0.99041 1.69999 1.32931 1.19032 1.31058 0.86433 0.77771 0.78434 0.85041 1.21268 1.21497 1.20309 1.19219 0.90658 0.87038 0.91380 0.89797 1.22114 1.00285 0.98124 1.00092 1.24349 0.91665 0.97144 0.83362 1.22069 1.07432 0.97512 1.00806 1.19995 1.00520 0.97373 0.94237 1.20178 0.97017 0.93379 0.99524 1.20623 1.00512 1.00420 0.94652 1.20768 1.00498 0.96397 0.95365 1.19946 0.97921 0.94430 0.99868 1.19942 0.97339 0.89261 0.94473 1.84418 1.50195 1.33977 1.37221 0.93028 0.93575 0.94166 0.94206 0.92570 0.87711 0.95942 0.93556 0.94306 0.91817 0.91749 0.83407 0.86293 0.86149 0.85555 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.14 -2.84 6.25 -26.73 -0.17 -3.01 16 3 C 0.14 3.22 5.18 -4.04 -0.02 3.20 16 4 N -0.57 -13.57 2.39 -166.98 -0.40 -13.96 16 5 C -0.25 -6.66 8.09 -15.06 -0.12 -6.78 16 6 H 0.08 2.05 5.83 -52.49 -0.31 1.75 16 7 C 0.01 0.29 4.90 -17.43 -0.09 0.20 16 8 N -0.89 -24.64 11.33 55.49 0.63 -24.01 16 9 Si 0.89 21.59 29.61 -169.99 -5.03 16.55 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.23 4.61 3.20 -69.08 -0.22 4.39 16 14 H 0.08 1.53 7.84 -51.93 -0.41 1.13 16 15 C -0.15 -2.86 9.14 37.16 0.34 -2.52 16 16 C 0.09 1.75 6.01 -35.80 -0.22 1.53 16 17 C -0.26 -4.60 10.99 -37.62 -0.41 -5.02 16 18 C -0.12 -2.14 6.40 -105.16 -0.67 -2.81 16 19 C -0.08 -1.21 10.05 -39.69 -0.40 -1.61 16 20 C -0.14 -1.86 9.98 -39.94 -0.40 -2.26 16 21 C -0.11 -1.50 10.01 -39.54 -0.40 -1.89 16 22 C -0.10 -1.67 10.07 -39.47 -0.40 -2.07 16 23 C 0.04 0.73 7.42 -38.47 -0.29 0.45 16 24 O -0.16 -3.49 8.08 3.91 0.03 -3.46 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.11 2.69 5.31 -51.93 -0.28 2.42 16 31 H 0.02 0.48 8.04 -51.93 -0.42 0.06 16 32 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.38 7.66 -51.93 -0.40 0.99 16 36 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -28.78 330.61 -8.89 -37.66 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.01 Total: 2.46 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.09 Total: -20.23 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.23 Total: -37.97 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.03 Total: -3.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.78 -8.89 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053643411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.494 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds