Wall clock time and date at job start Mon Mar 30 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 N 1.46502 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99928 * 264.51175 * 4 3 2 6 6 H 1.07994 * 119.99617 * 147.13329 * 5 4 3 7 7 C 1.38812 * 120.00143 * 327.14137 * 5 4 3 8 8 N 1.31622 * 119.99670 * 336.78788 * 7 5 4 9 9 Si 1.86796 * 119.99929 * 156.79144 * 7 5 4 10 10 H 1.48497 * 109.47291 * 89.99797 * 9 7 5 11 11 H 1.48504 * 109.47180 * 209.99646 * 9 7 5 12 12 H 1.48498 * 109.47073 * 329.99573 * 9 7 5 13 13 C 1.46496 * 120.00014 * 84.51833 * 4 3 2 14 14 H 1.09000 * 109.47384 * 359.97438 * 13 4 3 15 15 C 1.53003 * 109.47449 * 119.99847 * 13 4 3 16 16 C 1.50707 * 109.47067 * 239.99934 * 13 4 3 17 17 C 1.33987 * 124.92343 * 139.99903 * 16 13 4 18 18 C 1.46782 * 106.18703 * 179.97438 * 17 16 13 19 19 C 1.39409 * 134.37279 * 179.97438 * 18 17 16 20 20 C 1.36730 * 119.71543 * 180.02562 * 19 18 17 21 21 C 1.38744 * 120.41894 * 0.02562 * 20 19 18 22 22 C 1.37845 * 120.68516 * 0.02562 * 21 20 19 23 23 C 1.38935 * 119.81971 * 359.97438 * 22 21 20 24 24 O 1.34446 * 124.91879 * 319.97009 * 16 13 4 25 25 H 1.09005 * 109.46481 * 299.99805 * 1 2 3 26 26 H 1.09000 * 109.47156 * 59.99254 * 1 2 3 27 27 H 1.08997 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46481 * 240.00195 * 2 1 3 29 29 H 1.09002 * 109.47501 * 120.00339 * 2 1 3 30 30 H 1.09002 * 109.46768 * 60.00318 * 3 2 1 31 31 H 1.09002 * 109.47098 * 300.00586 * 3 2 1 32 32 H 0.97007 * 119.99768 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47150 * 179.97438 * 15 13 4 34 34 H 1.09002 * 109.46810 * 299.99724 * 15 13 4 35 35 H 1.09000 * 109.46761 * 59.99699 * 15 13 4 36 36 H 1.08000 * 126.90835 * 0.02562 * 17 16 13 37 37 H 1.07997 * 120.14008 * 0.03393 * 19 18 17 38 38 H 1.08002 * 119.79420 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.65853 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.08906 * 179.70344 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5556 1.1796 6 1 5.1406 1.0575 1.3021 7 6 3.6632 2.3105 2.2185 8 7 2.7895 3.2613 1.9636 9 14 4.1941 1.9770 3.9781 10 1 5.3790 2.8105 4.3041 11 1 3.0822 2.3140 4.9030 12 1 4.5431 0.5412 4.1261 13 6 4.2370 1.3213 -1.2638 14 1 3.5284 1.2419 -2.0882 15 6 5.1166 2.5571 -1.4641 16 6 5.1034 0.0888 -1.2263 17 6 5.2896 -0.7496 -2.2547 18 6 6.1985 -1.7955 -1.7707 19 6 6.7670 -2.9336 -2.3409 20 6 7.5980 -3.7225 -1.5950 21 6 7.8779 -3.3975 -0.2755 22 6 7.3243 -2.2768 0.3056 23 6 6.4772 -1.4616 -0.4348 24 8 5.8020 -0.3285 -0.1560 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.4215 3.7891 2.6896 33 1 5.6615 2.4668 -2.4038 34 1 4.4899 3.4486 -1.4914 35 1 5.8252 2.6361 -0.6397 36 1 4.8582 -0.6711 -3.2418 37 1 6.5519 -3.1909 -3.3675 38 1 8.0394 -4.6043 -2.0356 39 1 8.5363 -4.0292 0.3024 40 1 7.5449 -2.0355 1.3350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053643411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:25 Heat of formation + Delta-G solvation = 26.224741 kcal Electronic energy + Delta-G solvation = -21389.203015 eV Core-core repulsion = 18363.177915 eV Total energy + Delta-G solvation = -3026.025100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.24389 -38.94940 -38.09064 -34.77606 -34.14695 -33.24834 -31.24095 -30.92497 -29.27576 -27.41204 -25.52503 -24.13046 -23.45523 -22.40274 -21.81869 -21.38270 -18.76079 -18.13787 -17.50503 -16.97558 -16.58942 -16.33040 -15.85259 -15.71514 -15.08411 -14.87913 -14.74448 -14.21994 -14.04514 -13.83617 -13.40307 -13.21839 -13.12709 -12.99398 -12.92181 -12.77111 -12.58287 -12.37796 -12.24639 -12.00173 -11.85813 -11.82345 -11.52462 -11.30941 -10.91726 -10.49133 -9.46721 -8.95203 -8.64793 -7.85299 -5.37640 0.08108 0.51209 1.38887 1.42462 1.51167 1.55693 2.02824 2.49452 2.86257 3.21833 3.48136 3.65184 3.85806 4.16250 4.25300 4.27737 4.31000 4.42284 4.44114 4.51016 4.62086 4.63874 4.66022 4.82326 4.86478 4.97751 5.01793 5.08605 5.09008 5.24338 5.34955 5.37087 5.42949 5.48240 5.55033 5.56086 5.64578 5.80280 5.89261 5.94239 6.43457 6.51923 7.17436 7.83703 8.32663 9.13266 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.006534 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.756315 B = 4284.372837 C = 4906.193232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.142 3.858 4 N -0.586 5.586 5 C -0.245 4.245 6 H 0.059 0.941 7 C -0.035 4.035 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.285 1.285 11 H -0.287 1.287 12 H -0.283 1.283 13 C 0.225 3.775 14 H 0.107 0.893 15 C -0.136 4.136 16 C 0.049 3.951 17 C -0.238 4.238 18 C -0.144 4.144 19 C -0.083 4.083 20 C -0.136 4.136 21 C -0.095 4.095 22 C -0.131 4.131 23 C 0.001 3.999 24 O -0.198 6.198 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.251 0.749 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.178 0.822 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.833 -11.457 -9.366 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.017 3.983 4 N -0.305 5.305 5 C -0.376 4.376 6 H 0.077 0.923 7 C -0.232 4.232 8 N -0.557 5.557 9 Si 0.771 3.229 10 H -0.212 1.212 11 H -0.213 1.213 12 H -0.208 1.208 13 C 0.117 3.883 14 H 0.124 0.876 15 C -0.195 4.195 16 C -0.001 4.001 17 C -0.257 4.257 18 C -0.145 4.145 19 C -0.101 4.101 20 C -0.153 4.153 21 C -0.113 4.113 22 C -0.149 4.149 23 C -0.047 4.047 24 O -0.099 6.099 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.195 0.805 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.182 0.818 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.741 -11.180 -8.980 15.104 hybrid contribution 0.133 0.299 1.319 1.359 sum 4.873 -10.881 -7.661 14.172 Atomic orbital electron populations 1.21621 0.94586 1.01553 1.01650 1.21944 0.96204 0.99308 0.99493 1.21073 0.82299 0.93696 1.01219 1.44190 1.01656 1.83459 1.01202 1.19245 1.04850 1.22709 0.90764 0.92316 1.25537 1.00557 0.95589 1.01510 1.70096 1.34293 1.19963 1.31305 0.85680 0.77332 0.77728 0.82185 1.21207 1.21277 1.20838 1.19394 0.90957 0.87529 0.90394 0.87567 1.21994 0.99529 0.97554 1.00455 1.24066 0.93684 0.98216 0.84175 1.22429 1.05972 0.96254 1.01077 1.20297 1.01535 0.98819 0.93827 1.20623 0.96309 0.92057 1.01065 1.21171 0.99034 1.01006 0.94118 1.21288 0.99090 0.94925 0.95982 1.20292 0.98701 0.95613 1.00315 1.20509 0.98643 0.89281 0.96241 1.84283 1.51436 1.35617 1.38545 0.93786 0.91800 0.92028 0.93485 0.95509 0.90810 0.94869 0.93997 0.91042 0.92806 0.94878 0.80502 0.83323 0.81858 0.81813 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.91 71.98 0.71 -3.67 16 2 C -0.13 -5.22 6.25 30.59 0.19 -5.02 16 3 C 0.14 6.59 5.18 86.38 0.45 7.04 16 4 N -0.59 -28.73 2.39 -682.20 -1.63 -30.36 16 5 C -0.25 -13.58 8.09 84.03 0.68 -12.90 16 6 H 0.06 3.42 5.83 -2.91 -0.02 3.40 16 7 C -0.04 -1.98 4.90 84.86 0.42 -1.56 16 8 N -0.91 -52.58 11.33 21.65 0.25 -52.34 16 9 Si 0.94 46.15 29.61 68.60 2.03 48.18 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 13 C 0.23 9.26 3.20 44.25 0.14 9.40 16 14 H 0.11 3.78 7.84 -2.39 -0.02 3.76 16 15 C -0.14 -5.40 9.14 71.98 0.66 -4.74 16 16 C 0.05 2.00 6.01 24.72 0.15 2.15 16 17 C -0.24 -8.15 10.99 23.54 0.26 -7.89 16 18 C -0.14 -4.89 6.40 -20.21 -0.13 -5.02 16 19 C -0.08 -2.10 10.05 22.20 0.22 -1.88 16 20 C -0.14 -2.87 9.98 22.04 0.22 -2.65 16 21 C -0.10 -2.22 10.01 22.30 0.22 -1.99 16 22 C -0.13 -4.17 10.07 22.34 0.23 -3.94 16 23 C 0.00 0.02 7.42 22.99 0.17 0.19 16 24 O -0.20 -9.05 8.08 -8.93 -0.07 -9.12 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 3.94 5.31 -2.39 -0.01 3.93 16 31 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 32 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.03 1.48 7.66 -2.39 -0.02 1.46 16 36 H 0.18 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -66.13 330.61 6.17 -59.95 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.01 Total: 16.18 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 4.59 Total: -32.49 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -1.39 Total: -82.70 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.07 Total: -9.12 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -66.13 6.17 -59.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053643411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.179 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds