Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 N 1.46502 * 109.47300 * 180.10748 * 3 2 1 5 5 C 1.36940 * 120.00097 * 84.52311 * 4 3 2 6 6 H 1.08003 * 119.99615 * 332.58345 * 5 4 3 7 7 C 1.38802 * 120.00042 * 152.58206 * 5 4 3 8 8 N 1.31622 * 120.00193 * 153.48127 * 7 5 4 9 9 Si 1.86801 * 120.00298 * 333.48069 * 7 5 4 10 10 H 1.48497 * 109.47326 * 88.14691 * 9 7 5 11 11 H 1.48495 * 109.47208 * 208.15262 * 9 7 5 12 12 H 1.48506 * 109.46715 * 328.14789 * 9 7 5 13 13 C 1.46499 * 120.00095 * 264.52477 * 4 3 2 14 14 H 1.08997 * 109.46995 * 178.31231 * 13 4 3 15 15 C 1.52999 * 109.47103 * 58.30756 * 13 4 3 16 16 C 1.50703 * 109.46654 * 298.31273 * 13 4 3 17 17 C 1.34001 * 124.91803 * 217.80861 * 16 13 4 18 18 C 1.46779 * 106.18417 * 179.73672 * 17 16 13 19 19 C 1.39405 * 134.36948 * 180.02562 * 18 17 16 20 20 C 1.36742 * 119.71625 * 179.97438 * 19 18 17 21 21 C 1.38742 * 120.41602 * 359.97438 * 20 19 18 22 22 C 1.37852 * 120.68750 * 0.02562 * 21 20 19 23 23 C 1.38942 * 119.81328 * 359.97438 * 22 21 20 24 24 O 1.34444 * 124.92844 * 37.50111 * 16 13 4 25 25 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47217 * 299.99836 * 1 2 3 27 27 H 1.08997 * 109.47392 * 60.00095 * 1 2 3 28 28 H 1.09007 * 109.47382 * 239.99709 * 2 1 3 29 29 H 1.09004 * 109.47527 * 120.00303 * 2 1 3 30 30 H 1.08998 * 109.46944 * 60.10462 * 3 2 1 31 31 H 1.09001 * 109.46814 * 300.10602 * 3 2 1 32 32 H 0.97002 * 120.00371 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47056 * 60.00662 * 15 13 4 34 34 H 1.09000 * 109.46936 * 180.02562 * 15 13 4 35 35 H 1.08997 * 109.47583 * 300.00115 * 15 13 4 36 36 H 1.07999 * 126.90643 * 359.73050 * 17 16 13 37 37 H 1.08000 * 120.14568 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.79379 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.65659 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.09356 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0026 5 6 4.1876 1.3301 -1.1844 6 1 3.7371 0.8176 -2.0215 7 6 5.4585 1.8748 -1.3063 8 7 6.3122 1.3666 -2.1696 9 14 5.9573 3.3290 -0.2452 10 1 6.5192 2.8359 1.0379 11 1 6.9820 4.1334 -0.9579 12 1 4.7668 4.1737 0.0279 13 6 4.2397 1.5628 1.2591 14 1 5.3106 1.5139 1.0620 15 6 3.8401 0.4188 2.1930 16 6 3.9083 2.8813 1.9095 17 6 4.7819 3.6494 2.5748 18 6 4.0306 4.8269 3.0258 19 6 4.3562 5.9719 3.7512 20 6 3.3929 6.9075 4.0095 21 6 2.0954 6.7240 3.5538 22 6 1.7548 5.5981 2.8350 23 6 2.7186 4.6353 2.5616 24 8 2.6949 3.4601 1.9015 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6781 1.9558 0.8909 31 1 1.6750 1.9569 -0.8891 32 1 7.2002 1.7475 -2.2551 33 1 4.0798 -0.5349 1.7226 34 1 4.3865 0.5085 3.1319 35 1 2.7692 0.4677 2.3902 36 1 5.8283 3.4434 2.7449 37 1 5.3649 6.1195 4.1078 38 1 3.6439 7.7952 4.5710 39 1 1.3444 7.4709 3.7645 40 1 0.7418 5.4648 2.4852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053643413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = 54.747972 kcal Electronic energy + Delta-G solvation = -21743.350235 eV Core-core repulsion = 18718.561995 eV Total energy + Delta-G solvation = -3024.788240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12994 -37.90654 -36.82211 -33.45332 -32.59901 -31.72900 -30.20992 -29.95897 -28.19513 -25.99310 -24.02066 -22.64488 -22.27448 -21.15447 -20.71008 -19.90278 -17.34028 -17.08455 -16.07795 -15.93335 -15.46313 -14.95274 -14.48731 -14.04093 -13.82048 -13.59626 -13.16438 -13.07383 -12.85723 -12.56945 -12.28118 -11.98671 -11.92014 -11.75372 -11.62502 -11.55114 -11.07362 -10.79020 -10.70039 -10.57965 -10.53318 -10.01911 -9.86612 -9.64958 -9.41293 -8.60782 -8.37588 -7.70816 -7.13010 -6.04854 -3.38915 1.15958 1.58128 2.74421 3.09452 3.23084 3.48034 3.59126 3.92186 4.45992 4.67613 4.81271 4.92266 5.04799 5.27766 5.35606 5.44671 5.51946 5.56716 5.61495 5.63805 5.82671 5.88074 5.95563 5.99875 6.07442 6.17097 6.20728 6.37729 6.42781 6.44533 6.44971 6.50333 6.57596 6.59978 6.70093 6.80597 6.85644 6.93386 7.10353 7.58228 7.89119 8.26320 8.86395 9.62867 9.96767 11.08668 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.008194 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.549919 B = 3416.254485 C = 4534.415571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.145 3.855 4 N -0.589 5.589 5 C -0.269 4.269 6 H 0.091 0.909 7 C 0.029 3.971 8 N -0.894 5.894 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.303 1.303 12 H -0.267 1.267 13 C 0.218 3.782 14 H 0.115 0.885 15 C -0.157 4.157 16 C 0.063 3.937 17 C -0.247 4.247 18 C -0.118 4.118 19 C -0.079 4.079 20 C -0.141 4.141 21 C -0.109 4.109 22 C -0.104 4.104 23 C 0.040 3.960 24 O -0.175 6.175 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.155 0.845 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 5.212 11.974 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.019 3.981 4 N -0.308 5.308 5 C -0.396 4.396 6 H 0.108 0.892 7 C -0.171 4.171 8 N -0.535 5.535 9 Si 0.691 3.309 10 H -0.208 1.208 11 H -0.231 1.231 12 H -0.192 1.192 13 C 0.109 3.891 14 H 0.132 0.868 15 C -0.216 4.216 16 C 0.012 3.988 17 C -0.267 4.267 18 C -0.119 4.119 19 C -0.097 4.097 20 C -0.160 4.160 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.007 4.007 24 O -0.075 6.075 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.669 5.098 11.690 14.881 hybrid contribution 0.672 1.095 0.496 1.378 sum -6.997 6.194 12.186 15.356 Atomic orbital electron populations 1.21723 0.97182 1.00554 1.01081 1.22162 0.93907 1.00165 1.02178 1.21019 0.83193 0.93866 0.99984 1.44308 1.00967 1.84088 1.01447 1.18880 0.98548 1.31035 0.91180 0.89164 1.25297 0.96326 0.98445 0.97041 1.69915 1.05483 1.39785 1.38290 0.87527 0.78459 0.85913 0.78968 1.20793 1.23089 1.19181 1.19669 0.98591 0.84883 0.85987 0.86793 1.22348 1.01427 0.99319 0.98526 1.24143 0.81687 0.97248 0.95674 1.22357 1.00788 0.95400 1.08107 1.19983 0.93665 0.96622 1.01639 1.20241 0.99555 0.92327 0.97615 1.20661 0.93277 0.99585 1.02436 1.20795 0.96727 0.96630 0.98541 1.19898 0.97949 0.92463 1.01937 1.19831 0.95659 0.88061 0.97177 1.84137 1.32584 1.28900 1.61888 0.93592 0.93462 0.93159 0.91868 0.92406 0.93023 0.93170 0.92632 0.90948 0.93058 0.92490 0.82745 0.86004 0.85864 0.85303 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.15 0.37 -1.72 16 2 C -0.14 -2.51 6.02 -26.73 -0.16 -2.67 16 3 C 0.14 2.91 4.66 -4.04 -0.02 2.89 16 4 N -0.59 -13.71 2.15 -166.98 -0.36 -14.07 16 5 C -0.27 -7.33 9.98 -15.06 -0.15 -7.48 16 6 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 7 C 0.03 0.82 5.09 -17.43 -0.09 0.73 16 8 N -0.89 -26.84 13.97 55.49 0.78 -26.06 16 9 Si 0.86 22.15 22.13 -169.99 -3.76 18.39 16 10 H -0.28 -6.61 4.92 56.52 0.28 -6.34 16 11 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 12 H -0.27 -7.15 6.11 56.52 0.35 -6.80 16 13 C 0.22 4.68 2.11 -69.08 -0.15 4.53 16 14 H 0.11 2.67 4.29 -51.93 -0.22 2.45 16 15 C -0.16 -2.77 8.14 37.16 0.30 -2.47 16 16 C 0.06 1.34 3.87 -35.80 -0.14 1.20 16 17 C -0.25 -4.96 8.19 -37.62 -0.31 -5.27 16 18 C -0.12 -2.21 6.40 -105.16 -0.67 -2.88 16 19 C -0.08 -1.21 10.05 -39.69 -0.40 -1.61 16 20 C -0.14 -1.82 9.98 -39.94 -0.40 -2.22 16 21 C -0.11 -1.38 10.01 -39.54 -0.40 -1.78 16 22 C -0.10 -1.57 10.07 -39.46 -0.40 -1.96 16 23 C 0.04 0.76 7.42 -38.47 -0.29 0.48 16 24 O -0.17 -3.62 8.02 3.93 0.03 -3.59 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.06 0.98 6.07 -51.93 -0.32 0.66 16 30 H 0.05 1.01 5.65 -51.93 -0.29 0.71 16 31 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.95 6.61 -51.93 -0.34 0.61 16 36 H 0.15 2.93 6.91 -52.49 -0.36 2.56 16 37 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -30.68 311.35 -7.43 -38.11 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.92 Total: 2.75 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.89 Total: -20.23 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.42 Total: -40.13 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: 0.03 Total: -3.59 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -3.76 Total: 18.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.68 -7.43 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053643413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.862 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds