Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21551 * 120.00303 * 359.97438 * 14 13 3 16 16 C 1.47847 * 119.99752 * 180.02562 * 14 13 3 17 17 C 1.39587 * 120.19111 * 359.97438 * 16 14 13 18 18 C 1.37802 * 119.78974 * 179.97438 * 17 16 14 19 19 C 1.38668 * 120.41137 * 0.02992 * 18 17 16 20 20 C 1.38375 * 120.07720 * 359.97125 * 19 18 17 21 21 C 1.38237 * 119.99558 * 359.74695 * 20 19 18 22 22 C 1.51393 * 109.74157 * 180.02562 * 20 19 18 23 23 C 1.54326 * 105.17374 * 17.22323 * 22 20 19 24 24 C 1.51418 * 130.21814 * 179.97438 * 19 18 17 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.08006 * 120.10465 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.78993 * 179.97438 * 18 17 16 34 34 H 1.08005 * 119.94876 * 180.27627 * 21 20 19 35 35 H 1.09002 * 110.29895 * 136.15318 * 22 20 19 36 36 H 1.09004 * 110.29993 * 258.19774 * 22 20 19 37 37 H 1.09004 * 110.81980 * 91.81828 * 23 22 20 38 38 H 1.08999 * 110.82399 * 215.15576 * 23 22 20 39 39 H 1.09000 * 110.30251 * 281.70031 * 24 19 18 40 40 H 1.09005 * 110.30375 * 43.84875 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3367 2.6302 -0.4621 16 6 0.0719 3.3149 -2.6586 17 6 0.9716 3.3501 -3.7252 18 6 0.6106 3.9630 -4.9055 19 6 -0.6406 4.5455 -5.0399 20 6 -1.5370 4.5139 -3.9862 21 6 -1.1875 3.8967 -2.7997 22 6 -2.8197 5.2122 -4.3850 23 6 -2.7772 5.2862 -5.9259 24 6 -1.2615 5.2678 -6.2169 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5270 2.3971 31 1 2.2931 2.1156 -1.9978 32 1 1.9476 2.8984 -3.6258 33 1 1.3069 3.9906 -5.7306 34 1 -1.8894 3.8686 -1.9793 35 1 -3.6832 4.6329 -4.0578 36 1 -2.8535 6.2144 -3.9575 37 1 -3.2677 4.4195 -6.3691 38 1 -3.2317 6.2106 -6.2821 39 1 -0.8760 6.2853 -6.2824 40 1 -1.0610 4.7264 -7.1415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -29.344262 kcal Electronic energy + Delta-G solvation = -20679.493268 eV Core-core repulsion = 17651.058515 eV Total energy + Delta-G solvation = -3028.434753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31338 -38.87331 -35.64838 -35.07895 -32.37729 -31.55883 -31.42062 -29.15150 -27.54715 -27.29621 -23.48118 -22.53671 -21.98668 -20.94422 -20.09267 -19.40944 -17.60585 -16.47615 -15.99500 -15.74270 -15.23405 -14.90646 -14.70549 -14.37311 -13.83301 -13.43238 -13.07579 -13.01877 -12.79623 -12.72736 -12.33558 -11.97896 -11.81330 -11.77871 -11.60454 -11.38707 -11.02175 -10.93970 -10.79717 -10.68098 -10.66884 -9.96796 -9.85401 -9.23735 -9.16911 -8.80176 -8.71062 -8.53797 -7.98979 -6.23452 -4.27125 1.00757 1.40273 3.22908 3.27761 3.34819 3.42481 3.92444 4.11852 4.29522 4.33217 4.39582 4.77204 4.90628 5.00229 5.10118 5.15194 5.31781 5.38951 5.48645 5.50420 5.60106 5.62914 5.76825 5.93607 5.94766 6.07235 6.10393 6.10782 6.25538 6.38077 6.48057 6.56073 6.66902 6.79855 6.93111 6.97780 7.02644 7.30068 7.36381 7.55612 8.14083 8.56193 8.76477 8.97094 9.38603 10.88240 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.004259 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.718222 B = 6572.579046 C = 6880.783554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.238 3.762 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.286 1.286 13 N -0.696 5.696 14 C 0.543 3.457 15 O -0.550 6.550 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.085 4.085 20 C -0.111 4.111 21 C -0.052 4.052 22 C -0.081 4.081 23 C -0.120 4.120 24 C -0.083 4.083 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.268 0.732 31 H 0.392 0.608 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 6.190 -14.763 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.182 1.182 12 H -0.212 1.212 13 N -0.344 5.344 14 C 0.329 3.671 15 O -0.430 6.430 16 C -0.125 4.125 17 C -0.105 4.105 18 C -0.133 4.133 19 C -0.085 4.085 20 C -0.111 4.111 21 C -0.071 4.071 22 C -0.118 4.118 23 C -0.158 4.158 24 C -0.120 4.120 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.481 6.140 -13.931 20.335 hybrid contribution 0.076 0.100 0.539 0.554 sum -13.405 6.240 -13.392 19.949 Atomic orbital electron populations 1.21911 0.97416 0.98865 1.02080 1.22091 0.93704 0.99407 1.01273 1.19175 0.95555 0.89085 0.82650 0.93131 1.21007 0.88606 1.52372 0.95003 0.90338 1.24911 0.94877 0.93589 0.98859 1.69880 1.09618 1.48636 1.24387 0.86924 0.81327 0.79549 0.82345 1.19855 1.18221 1.21183 1.46507 1.14235 1.55437 1.18222 1.18228 0.82902 0.79114 0.86863 1.90718 1.51039 1.60395 1.40887 1.20134 0.95279 1.02016 0.95085 1.21299 0.99110 0.97798 0.92317 1.20529 0.95642 0.99300 0.97873 1.20760 0.94096 0.97504 0.96148 1.20505 0.96940 0.99680 0.93967 1.20702 0.95413 0.94508 0.96523 1.21032 0.94903 1.00200 0.95647 1.22290 0.95726 1.02386 0.95379 1.21078 0.94802 1.00038 0.96063 0.95079 0.93082 0.93135 0.92962 0.92024 0.92236 0.77321 0.85066 0.85835 0.85029 0.90657 0.90218 0.90958 0.90584 0.90114 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.53 37.16 0.32 -2.65 16 2 C -0.13 -2.76 5.54 -26.73 -0.15 -2.91 16 3 C 0.24 5.67 1.82 -69.08 -0.13 5.55 16 4 H 0.05 1.32 4.92 -51.93 -0.26 1.07 16 5 C -0.53 -14.30 9.05 -34.44 -0.31 -14.61 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 9 Si 0.87 21.63 26.69 -169.99 -4.54 17.09 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.27 6.88 56.52 0.39 -5.89 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.70 -14.30 4.98 -55.88 -0.28 -14.58 16 14 C 0.54 10.89 6.37 -12.33 -0.08 10.81 16 15 O -0.55 -12.57 13.48 5.32 0.07 -12.50 16 16 C -0.12 -2.01 5.87 -105.01 -0.62 -2.63 16 17 C -0.09 -1.20 9.54 -39.24 -0.37 -1.58 16 18 C -0.12 -1.38 10.02 -39.58 -0.40 -1.77 16 19 C -0.08 -0.98 6.14 -104.06 -0.64 -1.62 16 20 C -0.11 -1.39 6.13 -104.23 -0.64 -2.03 16 21 C -0.05 -0.79 9.59 -39.13 -0.38 -1.17 16 22 C -0.08 -0.75 6.77 -26.85 -0.18 -0.93 16 23 C -0.12 -0.89 7.08 -25.33 -0.18 -1.07 16 24 C -0.08 -0.69 6.77 -26.83 -0.18 -0.87 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.05 1.03 5.63 -51.93 -0.29 0.74 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.39 7.90 -51.93 -0.41 0.98 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 7.14 6.63 -40.82 -0.27 6.87 16 32 H 0.13 1.65 6.41 -52.48 -0.34 1.31 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.13 2.02 7.64 -52.48 -0.40 1.62 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -31.20 321.47 -8.90 -40.10 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.75 Total: 5.73 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -4.03 Total: -15.28 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.50 Total: -39.98 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.54 Total: 17.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.20 -8.90 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.761 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds