Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21551 * 120.00303 * 359.97438 * 14 13 3 16 16 C 1.47847 * 119.99752 * 180.02562 * 14 13 3 17 17 C 1.39587 * 120.19111 * 359.97438 * 16 14 13 18 18 C 1.37802 * 119.78974 * 179.97438 * 17 16 14 19 19 C 1.38668 * 120.41137 * 0.02992 * 18 17 16 20 20 C 1.38375 * 120.07720 * 359.97125 * 19 18 17 21 21 C 1.38237 * 119.99558 * 359.74695 * 20 19 18 22 22 C 1.51393 * 109.74157 * 180.02562 * 20 19 18 23 23 C 1.54326 * 105.17374 * 17.22323 * 22 20 19 24 24 C 1.51418 * 130.21814 * 179.97438 * 19 18 17 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.08006 * 120.10465 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.78993 * 179.97438 * 18 17 16 34 34 H 1.08005 * 119.94876 * 180.27627 * 21 20 19 35 35 H 1.09002 * 110.29895 * 136.15318 * 22 20 19 36 36 H 1.09004 * 110.29993 * 258.19774 * 22 20 19 37 37 H 1.09004 * 110.81980 * 91.81828 * 23 22 20 38 38 H 1.08999 * 110.82399 * 215.15576 * 23 22 20 39 39 H 1.09000 * 110.30251 * 281.70031 * 24 19 18 40 40 H 1.09005 * 110.30375 * 43.84875 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3367 2.6302 -0.4621 16 6 0.0719 3.3149 -2.6586 17 6 0.9716 3.3501 -3.7252 18 6 0.6106 3.9630 -4.9055 19 6 -0.6406 4.5455 -5.0399 20 6 -1.5370 4.5139 -3.9862 21 6 -1.1875 3.8967 -2.7997 22 6 -2.8197 5.2122 -4.3850 23 6 -2.7772 5.2862 -5.9259 24 6 -1.2615 5.2678 -6.2169 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5270 2.3971 31 1 2.2931 2.1156 -1.9978 32 1 1.9476 2.8984 -3.6258 33 1 1.3069 3.9906 -5.7306 34 1 -1.8894 3.8686 -1.9793 35 1 -3.6832 4.6329 -4.0578 36 1 -2.8535 6.2144 -3.9575 37 1 -3.2677 4.4195 -6.3691 38 1 -3.2317 6.2106 -6.2821 39 1 -0.8760 6.2853 -6.2824 40 1 -1.0610 4.7264 -7.1415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -47.692773 kcal Electronic energy + Delta-G solvation = -20680.288919 eV Core-core repulsion = 17651.058515 eV Total energy + Delta-G solvation = -3029.230404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46651 -40.25731 -37.09349 -36.40655 -34.42556 -33.21858 -32.41849 -30.32772 -29.16412 -28.27866 -25.05471 -24.05114 -23.06723 -21.73648 -21.67564 -21.00803 -19.27780 -18.12947 -17.49465 -16.70760 -16.42927 -16.22111 -16.11772 -15.87822 -15.39301 -14.81065 -14.56395 -14.22872 -14.07274 -13.80382 -13.72031 -13.69472 -13.41143 -12.95336 -12.80003 -12.61391 -12.46878 -12.38411 -12.00850 -11.87797 -11.81606 -11.74141 -11.63300 -11.23596 -10.88771 -10.80576 -9.89089 -9.77284 -9.45990 -8.40942 -6.46814 -0.11962 0.38147 1.27325 1.31785 1.43018 1.92905 2.25344 2.39112 2.87091 3.00488 3.45483 3.62297 3.87543 4.05343 4.16665 4.21767 4.27986 4.31940 4.38147 4.39819 4.51281 4.69322 4.73321 4.80513 4.89239 4.97980 5.04230 5.06951 5.13715 5.20577 5.21793 5.24006 5.34464 5.36324 5.39975 5.44937 5.52546 5.59045 5.71632 5.94015 6.11799 6.57141 6.85493 7.18516 7.39914 8.74009 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030704 B = 0.004259 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.718222 B = 6572.579046 C = 6880.783554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.243 3.757 4 H 0.029 0.971 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.036 3.964 8 N -0.928 5.928 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.253 1.253 12 H -0.275 1.275 13 N -0.697 5.697 14 C 0.543 3.457 15 O -0.584 6.584 16 C -0.150 4.150 17 C -0.090 4.090 18 C -0.115 4.115 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.068 4.068 22 C -0.084 4.084 23 C -0.114 4.114 24 C -0.082 4.082 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.271 0.729 31 H 0.403 0.597 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 6.997 -17.172 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.139 3.861 4 H 0.047 0.953 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.177 1.177 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.332 3.668 15 O -0.467 6.467 16 C -0.153 4.153 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.121 4.121 23 C -0.151 4.151 24 C -0.119 4.119 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.239 0.761 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.065 6.947 -16.369 23.305 hybrid contribution 0.537 -0.092 1.141 1.264 sum -14.528 6.856 -15.228 22.135 Atomic orbital electron populations 1.21775 0.95970 1.00357 1.01046 1.22004 0.94907 0.97910 1.01423 1.18929 0.93430 0.90286 0.83478 0.95338 1.21200 0.90097 1.51180 0.94213 0.92424 1.25548 0.95755 0.93757 1.01407 1.69968 1.11014 1.50523 1.25181 0.86118 0.80120 0.79179 0.79856 1.20254 1.17731 1.20056 1.46258 1.15064 1.55766 1.17487 1.18738 0.81959 0.78274 0.87859 1.90684 1.51868 1.61665 1.42496 1.19868 0.96862 1.04342 0.94213 1.21433 0.98958 0.98080 0.92430 1.20870 0.96469 0.98135 0.97747 1.21313 0.93524 0.96017 0.97045 1.20891 0.98849 0.99023 0.93105 1.20710 0.94864 0.95628 0.97500 1.21167 0.93290 1.00199 0.97402 1.22329 0.95355 1.03949 0.93488 1.21214 0.94994 1.00528 0.95120 0.92213 0.94737 0.93563 0.91862 0.92788 0.91979 0.76087 0.84373 0.82777 0.86467 0.90298 0.89378 0.90413 0.88225 0.88580 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.53 71.98 0.61 -4.80 16 2 C -0.12 -5.41 5.54 30.59 0.17 -5.24 16 3 C 0.24 11.74 1.82 44.25 0.08 11.82 16 4 H 0.03 1.52 4.92 -2.39 -0.01 1.51 16 5 C -0.53 -29.00 9.05 25.60 0.23 -28.77 16 6 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 7 C 0.04 2.05 5.47 84.65 0.46 2.51 16 8 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 9 Si 0.92 45.25 26.69 68.60 1.83 47.08 16 10 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.25 -12.13 6.88 99.48 0.68 -11.44 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.70 -29.14 4.98 -448.97 -2.24 -31.37 16 14 C 0.54 22.30 6.37 86.79 0.55 22.85 16 15 O -0.58 -27.55 13.48 -3.88 -0.05 -27.60 16 16 C -0.15 -4.98 5.87 -20.12 -0.12 -5.09 16 17 C -0.09 -2.42 9.54 22.49 0.21 -2.21 16 18 C -0.11 -2.43 10.02 22.27 0.22 -2.21 16 19 C -0.08 -1.59 6.14 -19.50 -0.12 -1.71 16 20 C -0.12 -2.78 6.13 -19.61 -0.12 -2.90 16 21 C -0.07 -2.07 9.59 22.56 0.22 -1.85 16 22 C -0.08 -1.34 6.77 30.52 0.21 -1.13 16 23 C -0.11 -1.23 7.08 31.50 0.22 -1.00 16 24 C -0.08 -1.00 6.77 30.53 0.21 -0.80 16 25 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.03 1.48 7.88 -2.39 -0.02 1.46 16 27 H 0.05 1.89 5.63 -2.39 -0.01 1.87 16 28 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.05 2.42 7.90 -2.38 -0.02 2.41 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.40 14.89 6.63 -92.71 -0.61 14.27 16 32 H 0.14 3.38 6.41 -2.91 -0.02 3.36 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.12 3.78 7.64 -2.91 -0.02 3.76 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -68.72 321.47 3.29 -65.42 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.41 Total: 22.37 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.04 Total: -20.52 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -1.94 Total: -86.76 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.83 Total: 47.08 kcal Total: -68.72 3.29 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.732 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds