Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46516 * 2 1 4 4 H 1.08994 * 109.47512 * 304.90092 * 3 2 1 5 5 C 1.50708 * 109.46675 * 184.90049 * 3 2 1 6 6 H 1.08002 * 119.99789 * 245.45406 * 5 3 2 7 7 C 1.37877 * 119.99930 * 65.45756 * 5 3 2 8 8 N 1.31509 * 119.99994 * 9.46619 * 7 5 3 9 9 Si 1.86797 * 119.99708 * 189.46681 * 7 5 3 10 10 H 1.48498 * 109.47328 * 84.99554 * 9 7 5 11 11 H 1.48503 * 109.47158 * 204.99301 * 9 7 5 12 12 H 1.48497 * 109.47344 * 324.99155 * 9 7 5 13 13 N 1.46499 * 109.47244 * 64.90559 * 3 2 1 14 14 C 1.34777 * 120.00066 * 274.99694 * 13 3 2 15 15 O 1.21555 * 119.99680 * 359.97438 * 14 13 3 16 16 C 1.47843 * 120.00076 * 179.97438 * 14 13 3 17 17 C 1.39587 * 120.19088 * 0.02562 * 16 14 13 18 18 C 1.37802 * 119.79022 * 179.97438 * 17 16 14 19 19 C 1.38659 * 120.41045 * 0.02562 * 18 17 16 20 20 C 1.38374 * 120.08081 * 359.97438 * 19 18 17 21 21 C 1.38241 * 119.99162 * 359.74648 * 20 19 18 22 22 C 1.51392 * 109.74832 * 179.97438 * 20 19 18 23 23 C 1.54332 * 105.17200 * 17.22445 * 22 20 19 24 24 C 1.51427 * 130.22193 * 179.97438 * 19 18 17 25 25 H 1.08996 * 109.47370 * 299.99602 * 1 2 3 26 26 H 1.09000 * 109.47233 * 60.00062 * 1 2 3 27 27 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47141 * 240.00900 * 2 1 3 29 29 H 1.09000 * 109.47233 * 119.99938 * 2 1 3 30 30 H 0.96995 * 120.00135 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00027 * 94.99516 * 13 3 2 32 32 H 1.08006 * 120.10643 * 359.97438 * 17 16 14 33 33 H 1.08009 * 119.79330 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.94481 * 180.27744 * 21 20 19 35 35 H 1.09005 * 110.30293 * 136.14721 * 22 20 19 36 36 H 1.08999 * 110.30602 * 258.20159 * 22 20 19 37 37 H 1.09005 * 110.81652 * 91.81200 * 23 22 20 38 38 H 1.09002 * 110.82365 * 215.15588 * 23 22 20 39 39 H 1.08992 * 110.30278 * 281.70596 * 24 19 18 40 40 H 1.09007 * 110.29549 * 43.85159 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1492 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3290 -0.6063 -0.7836 11 1 6.4618 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3638 15 8 -0.3419 2.6328 0.4276 16 6 0.0394 3.3263 2.6263 17 6 0.9261 3.3662 3.7036 18 6 0.5511 3.9851 4.8763 19 6 -0.7017 4.5679 4.9929 20 6 -1.5852 4.5318 3.9286 21 6 -1.2172 3.9186 2.7455 22 6 -2.8728 5.2316 4.3086 23 6 -2.5219 6.0756 5.5522 24 6 -1.3370 5.2954 6.1592 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8310 0.3849 -3.1428 31 1 2.2686 2.1243 1.9978 32 1 1.9029 2.9134 3.6184 33 1 1.2372 4.0164 5.7099 34 1 -1.9057 3.8947 1.9137 35 1 -3.2069 5.8765 3.4958 36 1 -3.6435 4.5000 4.5513 37 1 -2.2161 7.0814 5.2640 38 1 -3.3622 6.1117 6.2456 39 1 -1.6953 4.5812 6.9005 40 1 -0.6220 5.9834 6.6104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -30.266917 kcal Electronic energy + Delta-G solvation = -20599.385452 eV Core-core repulsion = 17570.910690 eV Total energy + Delta-G solvation = -3028.474762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25625 -38.73435 -35.56581 -34.94974 -32.37100 -31.40668 -31.10396 -29.06398 -27.46189 -26.84800 -23.56445 -22.56211 -21.91950 -20.91250 -20.03020 -19.19215 -17.51540 -16.15552 -15.91822 -15.48843 -15.17601 -14.88008 -14.55220 -14.44801 -13.72547 -13.35754 -13.04648 -12.94767 -12.72292 -12.68305 -11.97520 -11.91483 -11.61638 -11.43669 -11.35878 -11.33128 -11.01389 -10.96162 -10.76900 -10.75014 -10.34169 -10.19714 -9.68532 -9.10120 -9.04342 -8.76134 -8.48966 -8.47357 -7.81891 -6.14074 -4.19540 1.06028 1.43866 3.25507 3.31031 3.32551 3.33831 4.02481 4.21165 4.31098 4.39597 4.44062 4.79705 4.93849 5.04264 5.17262 5.19012 5.36478 5.42668 5.51504 5.53177 5.62848 5.67069 5.80562 5.96366 5.99007 6.14633 6.36206 6.40998 6.41400 6.53272 6.59435 6.62354 6.96332 7.01496 7.18469 7.33339 7.42471 7.62399 7.72340 7.85227 8.07979 8.67660 8.79861 9.13344 9.46319 10.94192 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.004010 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.713478 B = 6981.017956 C = 7529.302600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.545 6.545 16 C -0.120 4.120 17 C -0.088 4.088 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.110 4.110 21 C -0.053 4.053 22 C -0.081 4.081 23 C -0.120 4.120 24 C -0.082 4.082 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 7.394 16.171 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.075 0.925 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.328 3.672 15 O -0.425 6.425 16 C -0.123 4.123 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.087 4.087 20 C -0.110 4.110 21 C -0.072 4.072 22 C -0.118 4.118 23 C -0.158 4.158 24 C -0.119 4.119 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.924 7.280 15.255 19.114 hybrid contribution 1.448 -0.282 0.237 1.495 sum -7.476 6.998 15.492 18.570 Atomic orbital electron populations 1.21851 0.98025 0.98189 1.01571 1.21851 0.93006 0.99804 1.01190 1.18831 0.94396 0.88942 0.81201 0.92470 1.21174 0.90531 1.44105 1.01841 0.92099 1.24880 0.98466 0.95134 0.94957 1.69982 1.35758 1.43688 1.02139 0.86530 0.85003 0.78712 0.77271 1.20416 1.21167 1.19905 1.46438 1.14376 1.55498 1.18548 1.18138 0.82981 0.79316 0.86784 1.90734 1.51691 1.60194 1.39867 1.20199 0.95352 1.01533 0.95214 1.21279 0.99163 0.97862 0.92415 1.20511 0.95596 0.99395 0.97895 1.20743 0.94048 0.97981 0.95927 1.20507 0.96633 1.00013 0.93888 1.20715 0.95338 0.94478 0.96651 1.21032 0.94657 0.98160 0.97938 1.22285 0.97817 0.98871 0.96818 1.21065 0.96938 0.98243 0.95687 0.93999 0.92924 0.95752 0.90178 0.94694 0.92540 0.77952 0.85214 0.85946 0.84989 0.90623 0.90240 0.90957 0.90606 0.90199 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.12 -2.90 5.50 -26.73 -0.15 -3.04 16 3 C 0.27 6.80 2.11 -69.08 -0.15 6.66 16 4 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 5 C -0.54 -14.27 8.66 -34.44 -0.30 -14.57 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.88 5.16 -17.82 -0.09 1.79 16 8 N -0.88 -24.94 12.16 55.43 0.67 -24.27 16 9 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.91 4.97 -55.88 -0.28 -15.19 16 14 C 0.54 11.33 6.34 -12.33 -0.08 11.25 16 15 O -0.54 -13.11 13.48 5.32 0.07 -13.04 16 16 C -0.12 -2.03 5.87 -105.02 -0.62 -2.65 16 17 C -0.09 -1.25 9.54 -39.24 -0.37 -1.63 16 18 C -0.12 -1.41 10.02 -39.59 -0.40 -1.80 16 19 C -0.09 -1.02 6.14 -104.06 -0.64 -1.66 16 20 C -0.11 -1.42 6.13 -104.23 -0.64 -2.06 16 21 C -0.05 -0.82 9.59 -39.14 -0.38 -1.20 16 22 C -0.08 -0.77 6.77 -26.85 -0.18 -0.96 16 23 C -0.12 -0.93 7.08 -25.35 -0.18 -1.11 16 24 C -0.08 -0.70 6.77 -26.84 -0.18 -0.88 16 25 H 0.04 0.93 5.65 -51.93 -0.29 0.63 16 26 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 27 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.08 2.12 6.80 -51.93 -0.35 1.77 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 7.16 6.57 -40.82 -0.27 6.89 16 32 H 0.13 1.65 6.41 -52.48 -0.34 1.31 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.13 2.11 7.64 -52.48 -0.40 1.71 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -30.54 323.33 -9.51 -40.05 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.80 Total: 6.66 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -4.03 Total: -14.68 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.40 Total: -39.46 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.54 -9.51 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.782 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds