Wall clock time and date at job start Mon Mar 30 2020 02:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46516 * 2 1 4 4 H 1.08994 * 109.47512 * 304.90092 * 3 2 1 5 5 C 1.50708 * 109.46675 * 184.90049 * 3 2 1 6 6 H 1.08002 * 119.99789 * 245.45406 * 5 3 2 7 7 C 1.37877 * 119.99930 * 65.45756 * 5 3 2 8 8 N 1.31509 * 119.99994 * 9.46619 * 7 5 3 9 9 Si 1.86797 * 119.99708 * 189.46681 * 7 5 3 10 10 H 1.48498 * 109.47328 * 84.99554 * 9 7 5 11 11 H 1.48503 * 109.47158 * 204.99301 * 9 7 5 12 12 H 1.48497 * 109.47344 * 324.99155 * 9 7 5 13 13 N 1.46499 * 109.47244 * 64.90559 * 3 2 1 14 14 C 1.34777 * 120.00066 * 274.99694 * 13 3 2 15 15 O 1.21555 * 119.99680 * 359.97438 * 14 13 3 16 16 C 1.47843 * 120.00076 * 179.97438 * 14 13 3 17 17 C 1.39587 * 120.19088 * 0.02562 * 16 14 13 18 18 C 1.37802 * 119.79022 * 179.97438 * 17 16 14 19 19 C 1.38659 * 120.41045 * 0.02562 * 18 17 16 20 20 C 1.38374 * 120.08081 * 359.97438 * 19 18 17 21 21 C 1.38241 * 119.99162 * 359.74648 * 20 19 18 22 22 C 1.51392 * 109.74832 * 179.97438 * 20 19 18 23 23 C 1.54332 * 105.17200 * 17.22445 * 22 20 19 24 24 C 1.51427 * 130.22193 * 179.97438 * 19 18 17 25 25 H 1.08996 * 109.47370 * 299.99602 * 1 2 3 26 26 H 1.09000 * 109.47233 * 60.00062 * 1 2 3 27 27 H 1.09008 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47141 * 240.00900 * 2 1 3 29 29 H 1.09000 * 109.47233 * 119.99938 * 2 1 3 30 30 H 0.96995 * 120.00135 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00027 * 94.99516 * 13 3 2 32 32 H 1.08006 * 120.10643 * 359.97438 * 17 16 14 33 33 H 1.08009 * 119.79330 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.94481 * 180.27744 * 21 20 19 35 35 H 1.09005 * 110.30293 * 136.14721 * 22 20 19 36 36 H 1.08999 * 110.30602 * 258.20159 * 22 20 19 37 37 H 1.09005 * 110.81652 * 91.81200 * 23 22 20 38 38 H 1.09002 * 110.82365 * 215.15588 * 23 22 20 39 39 H 1.08992 * 110.30278 * 281.70596 * 24 19 18 40 40 H 1.09007 * 110.29549 * 43.85159 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1492 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3290 -0.6063 -0.7836 11 1 6.4618 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3638 15 8 -0.3419 2.6328 0.4276 16 6 0.0394 3.3263 2.6263 17 6 0.9261 3.3662 3.7036 18 6 0.5511 3.9851 4.8763 19 6 -0.7017 4.5679 4.9929 20 6 -1.5852 4.5318 3.9286 21 6 -1.2172 3.9186 2.7455 22 6 -2.8728 5.2316 4.3086 23 6 -2.5219 6.0756 5.5522 24 6 -1.3370 5.2954 6.1592 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8310 0.3849 -3.1428 31 1 2.2686 2.1243 1.9978 32 1 1.9029 2.9134 3.6184 33 1 1.2372 4.0164 5.7099 34 1 -1.9057 3.8947 1.9137 35 1 -3.2069 5.8765 3.4958 36 1 -3.6435 4.5000 4.5513 37 1 -2.2161 7.0814 5.2640 38 1 -3.3622 6.1117 6.2456 39 1 -1.6953 4.5812 6.9005 40 1 -0.6220 5.9834 6.6104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:27 Heat of formation + Delta-G solvation = -47.697748 kcal Electronic energy + Delta-G solvation = -20600.141310 eV Core-core repulsion = 17570.910690 eV Total energy + Delta-G solvation = -3029.230620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43281 -40.20087 -37.03000 -36.39415 -34.31784 -32.96430 -32.40516 -30.24040 -28.78562 -28.25348 -25.28612 -24.04351 -23.04740 -21.79082 -21.67314 -20.85910 -19.08777 -17.77612 -17.39250 -16.59152 -16.43003 -16.28230 -16.18759 -15.84400 -15.24633 -14.62193 -14.55560 -14.23427 -13.98654 -13.69422 -13.53044 -13.33403 -13.29955 -12.93909 -12.78592 -12.63479 -12.45148 -12.21204 -12.10371 -12.00654 -11.80926 -11.67679 -11.62423 -11.12399 -10.77032 -10.54615 -9.86398 -9.73128 -9.43942 -8.20601 -6.34306 -0.10106 0.38854 1.44154 1.45500 1.55048 1.97015 2.33853 2.57833 2.89365 3.11069 3.46532 3.62936 3.90915 4.06865 4.17851 4.22129 4.32448 4.40429 4.43133 4.49527 4.67068 4.71637 4.74118 4.89418 4.98435 5.02105 5.05155 5.13792 5.19385 5.22631 5.34342 5.36910 5.39806 5.43536 5.50369 5.58673 5.59864 5.71514 5.88294 5.96863 6.04171 6.73365 6.93526 7.30940 7.51211 8.88349 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.004010 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.713478 B = 6981.017956 C = 7529.302600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.552 4.552 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.540 3.460 15 O -0.588 6.588 16 C -0.149 4.149 17 C -0.090 4.090 18 C -0.113 4.113 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.071 4.071 22 C -0.084 4.084 23 C -0.114 4.114 24 C -0.081 4.081 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 8.206 19.908 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.172 3.828 4 H 0.020 0.980 5 C -0.590 4.590 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.328 3.672 15 O -0.471 6.471 16 C -0.152 4.152 17 C -0.108 4.108 18 C -0.130 4.130 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.090 4.090 22 C -0.121 4.121 23 C -0.152 4.152 24 C -0.117 4.117 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.159 0.841 33 H 0.175 0.825 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.292 8.104 19.038 22.291 hybrid contribution 1.160 -0.457 -0.867 1.519 sum -7.132 7.648 18.172 20.965 Atomic orbital electron populations 1.21689 0.96860 0.99407 1.00307 1.21702 0.93956 0.98921 1.00509 1.18436 0.93967 0.89104 0.81271 0.97954 1.21530 0.91122 1.44045 1.02328 0.90912 1.25794 1.03377 0.94666 0.94448 1.70136 1.37899 1.44585 1.02788 0.85398 0.78946 0.79100 0.77151 1.19427 1.21358 1.18752 1.46184 1.15131 1.55610 1.17719 1.18781 0.82092 0.78489 0.87834 1.90699 1.52783 1.61751 1.41854 1.19886 0.97030 1.03974 0.94280 1.21433 0.99055 0.98020 0.92314 1.20879 0.96350 0.98003 0.97813 1.21319 0.93493 0.96413 0.96713 1.20884 0.98611 0.99370 0.93016 1.20703 0.94863 0.95804 0.97616 1.21173 0.93272 0.98524 0.99148 1.22327 0.98441 0.98400 0.95982 1.21201 0.97324 0.98660 0.94545 0.93940 0.95510 0.93094 0.92727 0.93181 0.92559 0.76212 0.84116 0.82497 0.86903 0.90554 0.89253 0.90571 0.88113 0.88391 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.51 71.98 0.61 -5.23 16 2 C -0.11 -5.60 5.50 30.59 0.17 -5.43 16 3 C 0.28 14.61 2.11 44.25 0.09 14.70 16 4 H 0.00 0.16 7.52 -2.39 -0.02 0.14 16 5 C -0.55 -29.77 8.66 25.60 0.22 -29.55 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.02 0.97 5.16 84.66 0.44 1.41 16 8 N -0.92 -53.82 12.16 21.45 0.26 -53.56 16 9 Si 0.97 42.40 29.55 68.60 2.03 44.43 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 13 N -0.70 -30.68 4.97 -448.97 -2.23 -32.91 16 14 C 0.54 23.70 6.34 86.79 0.55 24.25 16 15 O -0.59 -30.39 13.48 -3.89 -0.05 -30.45 16 16 C -0.15 -5.16 5.87 -20.12 -0.12 -5.28 16 17 C -0.09 -2.42 9.54 22.49 0.21 -2.21 16 18 C -0.11 -2.38 10.02 22.27 0.22 -2.16 16 19 C -0.08 -1.62 6.14 -19.50 -0.12 -1.74 16 20 C -0.12 -2.90 6.13 -19.61 -0.12 -3.02 16 21 C -0.07 -2.27 9.59 22.56 0.22 -2.06 16 22 C -0.08 -1.43 6.77 30.52 0.21 -1.22 16 23 C -0.11 -1.30 7.08 31.49 0.22 -1.07 16 24 C -0.08 -1.00 6.77 30.52 0.21 -0.79 16 25 H 0.04 1.95 5.65 -2.39 -0.01 1.93 16 26 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 3.00 6.80 -2.39 -0.02 2.99 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.40 14.94 6.57 -92.71 -0.61 14.34 16 32 H 0.14 3.36 6.41 -2.91 -0.02 3.35 16 33 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.11 3.93 7.64 -2.91 -0.02 3.90 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -70.08 323.33 3.45 -66.63 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.43 Total: 25.26 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.01 Total: -19.41 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.97 Total: -86.46 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -70.08 3.45 -66.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.936 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds