Wall clock time and date at job start Mon Mar 30 2020 02:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 H 1.09002 * 109.46797 * 306.03663 * 3 2 1 5 5 C 1.50705 * 109.47337 * 186.03801 * 3 2 1 6 6 H 1.07992 * 120.00440 * 245.50311 * 5 3 2 7 7 C 1.37879 * 119.99806 * 65.22207 * 5 3 2 8 8 N 1.31514 * 119.99895 * 192.88562 * 7 5 3 9 9 Si 1.86802 * 120.00035 * 12.88086 * 7 5 3 10 10 H 1.48508 * 109.46925 * 85.08265 * 9 7 5 11 11 H 1.48498 * 109.47316 * 205.08291 * 9 7 5 12 12 H 1.48501 * 109.47344 * 325.08263 * 9 7 5 13 13 N 1.46897 * 109.47343 * 66.03675 * 3 2 1 14 14 C 1.46902 * 111.00066 * 255.92698 * 13 3 2 15 15 H 1.08993 * 109.46936 * 35.36057 * 14 13 3 16 16 C 1.53001 * 109.46753 * 275.36123 * 14 13 3 17 17 C 1.50700 * 109.47104 * 155.36365 * 14 13 3 18 18 C 1.33991 * 124.92389 * 219.71689 * 17 14 13 19 19 C 1.46778 * 106.18536 * 179.89748 * 18 17 14 20 20 C 1.39408 * 134.37056 * 180.11989 * 19 18 17 21 21 C 1.36741 * 119.71629 * 180.26962 * 20 19 18 22 22 C 1.38736 * 120.41735 * 359.97438 * 21 20 19 23 23 C 1.37843 * 120.68674 * 359.97438 * 22 21 20 24 24 C 1.38939 * 119.81844 * 0.02562 * 23 22 21 25 25 O 1.34452 * 124.92223 * 40.02482 * 17 14 13 26 26 H 1.09006 * 109.46964 * 299.77260 * 1 2 3 27 27 H 1.08999 * 109.47209 * 59.77304 * 1 2 3 28 28 H 1.08999 * 109.47450 * 179.77619 * 1 2 3 29 29 H 1.08998 * 109.47551 * 239.99650 * 2 1 3 30 30 H 1.08998 * 109.46886 * 119.99772 * 2 1 3 31 31 H 0.97000 * 119.99693 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00232 * 131.97228 * 13 3 2 33 33 H 1.08997 * 109.47840 * 300.00210 * 16 14 13 34 34 H 1.09003 * 109.47162 * 60.00424 * 16 14 13 35 35 H 1.09008 * 109.46735 * 179.97438 * 16 14 13 36 36 H 1.07994 * 126.90703 * 0.03209 * 18 17 14 37 37 H 1.07997 * 120.13990 * 0.28541 * 20 19 18 38 38 H 1.08001 * 119.79168 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.65453 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.09379 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9865 -0.8310 5 6 3.5396 1.4451 -0.1495 6 1 4.1620 1.8038 0.6569 7 6 4.1172 0.9842 -1.3135 8 7 5.4100 0.7467 -1.3569 9 14 3.0634 0.6970 -2.8289 10 1 2.9148 1.9711 -3.5772 11 1 3.7136 -0.3153 -3.6994 12 1 1.7241 0.2069 -2.4150 13 7 1.6729 2.0917 1.2656 14 6 0.5427 3.0109 1.0773 15 1 -0.1396 2.6002 0.3331 16 6 1.0631 4.3676 0.5983 17 6 -0.1860 3.1856 2.3848 18 6 -1.5174 3.2575 2.5172 19 6 -1.7774 3.4234 3.9523 20 6 -2.9300 3.5545 4.7254 21 6 -2.8240 3.7022 6.0807 22 6 -1.5776 3.7218 6.6897 23 6 -0.4270 3.5925 5.9417 24 6 -0.5125 3.4413 4.5632 25 8 0.4058 3.2976 3.5868 26 1 -0.3633 0.5103 0.8921 27 1 -0.3633 0.5173 -0.8879 28 1 -0.3634 -1.0276 -0.0040 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 5.8162 0.4221 -2.1757 32 1 2.4643 2.5697 1.6697 33 1 1.7455 4.7784 1.3424 34 1 1.5902 4.2413 -0.3474 35 1 0.2244 5.0496 0.4581 36 1 -2.2517 3.2022 1.7273 37 1 -3.9025 3.5392 4.2560 38 1 -3.7161 3.8035 6.6809 39 1 -1.5081 3.8395 7.7611 40 1 0.5384 3.6094 6.4257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:05 Heat of formation + Delta-G solvation = 24.953328 kcal Electronic energy + Delta-G solvation = -20865.026394 eV Core-core repulsion = 17838.946161 eV Total energy + Delta-G solvation = -3026.080233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28184 -38.00017 -37.04960 -33.74478 -32.43507 -31.83477 -30.35202 -29.62930 -28.17911 -26.60099 -23.68474 -22.67648 -22.46530 -21.39201 -20.47404 -19.69461 -17.31062 -17.21071 -16.34532 -15.94616 -15.55601 -15.23949 -14.31498 -14.02753 -13.86943 -13.54111 -13.32536 -13.08269 -12.82627 -12.72542 -12.45082 -12.24667 -11.99140 -11.90478 -11.77724 -11.39158 -11.18942 -10.89564 -10.85150 -10.65733 -10.36645 -9.99381 -9.89967 -9.35374 -9.15769 -8.56106 -8.53043 -8.02025 -7.59738 -6.17261 -4.15085 0.98302 1.40726 2.52745 2.90391 3.23084 3.32881 3.34659 3.75021 4.34998 4.41494 4.72098 4.90512 5.00457 5.15565 5.17324 5.26337 5.30022 5.38131 5.46729 5.53392 5.75565 5.88751 5.93839 6.03660 6.05867 6.09956 6.22931 6.27253 6.28265 6.41157 6.42940 6.53383 6.62056 6.72760 6.73449 6.97784 7.01038 7.38708 7.39323 7.56366 7.86325 8.24345 8.51412 8.89747 9.46843 10.95517 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033375 B = 0.004282 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.745965 B = 6537.953789 C = 6749.398291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.193 3.807 4 H 0.008 0.992 5 C -0.535 4.535 6 H 0.077 0.923 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.861 3.139 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.671 5.671 14 C 0.151 3.849 15 H 0.106 0.894 16 C -0.179 4.179 17 C 0.087 3.913 18 C -0.234 4.234 19 C -0.122 4.122 20 C -0.078 4.078 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.104 4.104 24 C 0.047 3.953 25 O -0.177 6.177 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.265 0.735 32 H 0.348 0.652 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.627 6.326 9.832 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.084 3.916 4 H 0.026 0.974 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.687 3.313 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.303 5.303 14 C 0.040 3.960 15 H 0.124 0.876 16 C -0.238 4.238 17 C 0.038 3.962 18 C -0.253 4.253 19 C -0.123 4.123 20 C -0.096 4.096 21 C -0.159 4.159 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.001 4.001 25 O -0.078 6.078 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.546 5.713 9.969 19.332 hybrid contribution -0.115 0.487 -1.403 1.489 sum -15.661 6.201 8.567 18.897 Atomic orbital electron populations 1.21863 0.98656 0.99793 1.00432 1.21955 0.92734 0.99326 1.01232 1.19478 0.95716 0.90823 0.85567 0.97402 1.21238 0.89306 1.44116 1.02595 0.90537 1.24902 0.94758 0.94085 0.98731 1.69955 1.10933 1.44095 1.27747 0.87305 0.82362 0.78315 0.83270 1.20567 1.21402 1.17015 1.60642 1.09458 1.31490 1.28670 1.20415 0.94995 0.93246 0.87388 0.87642 1.22542 1.01507 0.96877 1.02886 1.22759 0.91598 0.96556 0.85264 1.22097 0.95150 1.13540 0.94551 1.19954 0.93870 1.04861 0.93579 1.20239 0.96844 0.99225 0.93320 1.20702 0.97639 1.03052 0.94470 1.20838 0.91437 1.00507 0.99563 1.19950 0.99847 1.04016 0.88399 1.19707 0.87096 1.02738 0.90545 1.84044 1.35293 1.74343 1.14091 0.92696 0.94431 0.94499 0.92567 0.92243 0.92558 0.83243 0.91988 0.90611 0.92546 0.82885 0.85915 0.85777 0.85172 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.92 37.16 0.33 -2.39 16 2 C -0.11 -2.46 4.90 -26.73 -0.13 -2.59 16 3 C 0.19 4.30 1.52 -68.86 -0.10 4.19 16 4 H 0.01 0.19 5.93 -51.93 -0.31 -0.12 16 5 C -0.53 -14.30 9.02 -34.44 -0.31 -14.62 16 6 H 0.08 2.23 7.66 -52.49 -0.40 1.83 16 7 C 0.08 2.18 5.36 -17.82 -0.10 2.08 16 8 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 9 Si 0.86 20.38 25.84 -169.99 -4.39 15.99 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.25 -5.44 5.30 56.52 0.30 -5.14 16 13 N -0.67 -13.30 5.77 -102.17 -0.59 -13.89 16 14 C 0.15 2.50 2.08 -68.86 -0.14 2.36 16 15 H 0.11 1.69 6.49 -51.93 -0.34 1.35 16 16 C -0.18 -2.73 9.13 37.16 0.34 -2.39 16 17 C 0.09 1.42 6.09 -35.80 -0.22 1.20 16 18 C -0.23 -3.43 10.99 -37.63 -0.41 -3.84 16 19 C -0.12 -1.77 6.40 -105.16 -0.67 -2.45 16 20 C -0.08 -0.93 10.05 -39.69 -0.40 -1.33 16 21 C -0.14 -1.44 9.98 -39.94 -0.40 -1.84 16 22 C -0.11 -1.09 10.01 -39.54 -0.40 -1.49 16 23 C -0.10 -1.31 10.07 -39.47 -0.40 -1.71 16 24 C 0.05 0.73 7.42 -38.47 -0.29 0.44 16 25 O -0.18 -3.07 10.56 3.90 0.04 -3.03 16 26 H 0.05 0.97 6.87 -51.93 -0.36 0.61 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.27 4.66 -51.93 -0.24 1.03 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.35 7.16 7.63 -39.29 -0.30 6.86 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -29.68 323.88 -8.40 -38.08 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.81 Total: 8.02 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -3.29 Total: -24.36 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.18 Total: -39.57 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.39 Total: 15.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.68 -8.40 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.030 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds