Wall clock time and date at job start Mon Mar 30 2020 02:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 H 1.09002 * 109.46797 * 306.03663 * 3 2 1 5 5 C 1.50705 * 109.47337 * 186.03801 * 3 2 1 6 6 H 1.07992 * 120.00440 * 245.50311 * 5 3 2 7 7 C 1.37879 * 119.99806 * 65.22207 * 5 3 2 8 8 N 1.31514 * 119.99895 * 192.88562 * 7 5 3 9 9 Si 1.86802 * 120.00035 * 12.88086 * 7 5 3 10 10 H 1.48508 * 109.46925 * 85.08265 * 9 7 5 11 11 H 1.48498 * 109.47316 * 205.08291 * 9 7 5 12 12 H 1.48501 * 109.47344 * 325.08263 * 9 7 5 13 13 N 1.46897 * 109.47343 * 66.03675 * 3 2 1 14 14 C 1.46902 * 111.00066 * 255.92698 * 13 3 2 15 15 H 1.08993 * 109.46936 * 35.36057 * 14 13 3 16 16 C 1.53001 * 109.46753 * 275.36123 * 14 13 3 17 17 C 1.50700 * 109.47104 * 155.36365 * 14 13 3 18 18 C 1.33991 * 124.92389 * 219.71689 * 17 14 13 19 19 C 1.46778 * 106.18536 * 179.89748 * 18 17 14 20 20 C 1.39408 * 134.37056 * 180.11989 * 19 18 17 21 21 C 1.36741 * 119.71629 * 180.26962 * 20 19 18 22 22 C 1.38736 * 120.41735 * 359.97438 * 21 20 19 23 23 C 1.37843 * 120.68674 * 359.97438 * 22 21 20 24 24 C 1.38939 * 119.81844 * 0.02562 * 23 22 21 25 25 O 1.34452 * 124.92223 * 40.02482 * 17 14 13 26 26 H 1.09006 * 109.46964 * 299.77260 * 1 2 3 27 27 H 1.08999 * 109.47209 * 59.77304 * 1 2 3 28 28 H 1.08999 * 109.47450 * 179.77619 * 1 2 3 29 29 H 1.08998 * 109.47551 * 239.99650 * 2 1 3 30 30 H 1.08998 * 109.46886 * 119.99772 * 2 1 3 31 31 H 0.97000 * 119.99693 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00232 * 131.97228 * 13 3 2 33 33 H 1.08997 * 109.47840 * 300.00210 * 16 14 13 34 34 H 1.09003 * 109.47162 * 60.00424 * 16 14 13 35 35 H 1.09008 * 109.46735 * 179.97438 * 16 14 13 36 36 H 1.07994 * 126.90703 * 0.03209 * 18 17 14 37 37 H 1.07997 * 120.13990 * 0.28541 * 20 19 18 38 38 H 1.08001 * 119.79168 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.65453 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.09379 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9865 -0.8310 5 6 3.5396 1.4451 -0.1495 6 1 4.1620 1.8038 0.6569 7 6 4.1172 0.9842 -1.3135 8 7 5.4100 0.7467 -1.3569 9 14 3.0634 0.6970 -2.8289 10 1 2.9148 1.9711 -3.5772 11 1 3.7136 -0.3153 -3.6994 12 1 1.7241 0.2069 -2.4150 13 7 1.6729 2.0917 1.2656 14 6 0.5427 3.0109 1.0773 15 1 -0.1396 2.6002 0.3331 16 6 1.0631 4.3676 0.5983 17 6 -0.1860 3.1856 2.3848 18 6 -1.5174 3.2575 2.5172 19 6 -1.7774 3.4234 3.9523 20 6 -2.9300 3.5545 4.7254 21 6 -2.8240 3.7022 6.0807 22 6 -1.5776 3.7218 6.6897 23 6 -0.4270 3.5925 5.9417 24 6 -0.5125 3.4413 4.5632 25 8 0.4058 3.2976 3.5868 26 1 -0.3633 0.5103 0.8921 27 1 -0.3633 0.5173 -0.8879 28 1 -0.3634 -1.0276 -0.0040 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 5.8162 0.4221 -2.1757 32 1 2.4643 2.5697 1.6697 33 1 1.7455 4.7784 1.3424 34 1 1.5902 4.2413 -0.3474 35 1 0.2244 5.0496 0.4581 36 1 -2.2517 3.2022 1.7273 37 1 -3.9025 3.5392 4.2560 38 1 -3.7161 3.8035 6.6809 39 1 -1.5081 3.8395 7.7611 40 1 0.5384 3.6094 6.4257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:05 Heat of formation + Delta-G solvation = 6.919564 kcal Electronic energy + Delta-G solvation = -20865.808397 eV Core-core repulsion = 17838.946161 eV Total energy + Delta-G solvation = -3026.862235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.36119 -39.12257 -38.42884 -35.34416 -33.94900 -33.36537 -31.27839 -31.02026 -29.37063 -28.35008 -24.95056 -24.16677 -23.64110 -22.46127 -21.63873 -21.39802 -19.12878 -18.23711 -17.51363 -17.29291 -17.04784 -16.40543 -15.84220 -15.25688 -15.15313 -14.91379 -14.74617 -14.48730 -14.20545 -13.95188 -13.82584 -13.58702 -13.40190 -13.13175 -12.92745 -12.74413 -12.64400 -12.54960 -12.30647 -11.99675 -11.79911 -11.69850 -11.20287 -11.05743 -10.99298 -10.60990 -9.52369 -9.23369 -8.99739 -8.31848 -6.34151 0.02522 0.46682 1.35981 1.38699 1.43891 1.48373 1.84954 2.35065 2.83408 3.02719 3.23386 3.65208 3.80046 4.03074 4.12997 4.19384 4.21455 4.33611 4.45393 4.47198 4.52718 4.56613 4.61015 4.72011 4.81215 4.85006 4.89537 4.99049 5.15893 5.20689 5.27064 5.33840 5.39184 5.41127 5.52307 5.55545 5.55968 5.78146 5.84311 5.99532 6.32354 6.42012 6.61371 6.80087 7.32081 8.84616 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033375 B = 0.004282 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.745965 B = 6537.953789 C = 6749.398291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.201 3.799 4 H 0.017 0.983 5 C -0.537 4.537 6 H 0.033 0.967 7 C 0.021 3.979 8 N -0.943 5.943 9 Si 0.925 3.075 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.216 1.216 13 N -0.676 5.676 14 C 0.154 3.846 15 H 0.117 0.883 16 C -0.173 4.173 17 C 0.057 3.943 18 C -0.220 4.220 19 C -0.146 4.146 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.093 4.093 23 C -0.126 4.126 24 C 0.014 3.986 25 O -0.206 6.206 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.337 0.663 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.178 0.822 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.789 6.670 10.285 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.092 3.908 4 H 0.035 0.965 5 C -0.576 4.576 6 H 0.051 0.949 7 C -0.178 4.178 8 N -0.582 5.582 9 Si 0.748 3.252 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.139 1.139 13 N -0.307 5.307 14 C 0.044 3.956 15 H 0.135 0.865 16 C -0.232 4.232 17 C 0.009 3.991 18 C -0.240 4.240 19 C -0.147 4.147 20 C -0.101 4.101 21 C -0.153 4.153 22 C -0.111 4.111 23 C -0.144 4.144 24 C -0.033 4.033 25 O -0.108 6.108 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.195 0.805 37 H 0.165 0.835 38 H 0.179 0.821 39 H 0.183 0.817 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.746 6.069 10.440 23.146 hybrid contribution 1.163 0.444 -1.296 1.797 sum -18.582 6.513 9.144 21.710 Atomic orbital electron populations 1.21758 0.95351 1.01373 1.01325 1.21880 0.95662 0.97983 0.99850 1.19317 0.92541 0.91989 0.86982 0.96516 1.21545 0.91730 1.42974 1.01311 0.94868 1.25799 0.95923 0.93929 1.02145 1.70108 1.13227 1.46158 1.28718 0.86271 0.81793 0.78415 0.78723 1.19758 1.21729 1.13883 1.60596 1.09903 1.32872 1.27283 1.20434 0.93747 0.92977 0.88461 0.86497 1.22463 1.02115 0.96947 1.01684 1.22624 0.92194 0.99376 0.84896 1.22433 0.94777 1.11320 0.95433 1.20250 0.94503 1.06233 0.93692 1.20639 0.96977 0.98410 0.94032 1.21199 0.98896 1.00980 0.94240 1.21337 0.90701 0.97887 1.01150 1.20320 1.01410 1.04949 0.87723 1.20262 0.87480 1.04228 0.91376 1.83973 1.36655 1.75289 1.14901 0.92449 0.92849 0.92633 0.93544 0.94135 0.92567 0.84440 0.92978 0.91921 0.89904 0.80488 0.83477 0.82093 0.81704 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 8.92 71.98 0.64 -4.06 16 2 C -0.12 -4.88 4.90 30.59 0.15 -4.73 16 3 C 0.20 9.00 1.52 44.17 0.07 9.06 16 4 H 0.02 0.74 5.93 -2.39 -0.01 0.73 16 5 C -0.54 -29.96 9.02 25.60 0.23 -29.73 16 6 H 0.03 2.08 7.66 -2.91 -0.02 2.06 16 7 C 0.02 1.17 5.36 84.66 0.45 1.62 16 8 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 9 Si 0.92 42.02 25.84 68.60 1.77 43.79 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.22 -8.73 5.30 99.48 0.53 -8.20 16 13 N -0.68 -27.43 5.77 -477.16 -2.75 -30.19 16 14 C 0.15 5.04 2.08 44.17 0.09 5.13 16 15 H 0.12 3.50 6.49 -2.39 -0.02 3.49 16 16 C -0.17 -5.25 9.13 71.98 0.66 -4.59 16 17 C 0.06 1.85 6.09 24.72 0.15 2.00 16 18 C -0.22 -6.10 10.99 23.54 0.26 -5.84 16 19 C -0.15 -4.03 6.40 -20.21 -0.13 -4.16 16 20 C -0.08 -1.70 10.05 22.20 0.22 -1.47 16 21 C -0.14 -2.23 9.98 22.04 0.22 -2.01 16 22 C -0.09 -1.64 10.01 22.30 0.22 -1.41 16 23 C -0.13 -3.06 10.07 22.34 0.23 -2.84 16 24 C 0.01 0.42 7.42 22.99 0.17 0.59 16 25 O -0.21 -7.37 10.56 -8.97 -0.09 -7.46 16 26 H 0.06 1.89 6.87 -2.38 -0.02 1.87 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.03 4.66 -2.39 -0.01 2.02 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.34 14.79 7.63 -89.69 -0.68 14.11 16 33 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 34 H 0.06 2.04 7.76 -2.39 -0.02 2.02 16 35 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -67.83 323.88 3.03 -64.80 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.17 Total: 29.52 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 3.63 Total: -42.42 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.45 Total: -88.23 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.09 Total: -7.46 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.77 Total: 43.79 kcal Total: -67.83 3.03 -64.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.716 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds