Wall clock time and date at job start Mon Mar 30 2020 01:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47422 * 2 1 4 4 C 1.53004 * 109.46649 * 239.99954 * 2 1 3 5 5 C 1.50696 * 109.47336 * 120.00558 * 2 1 3 6 6 C 1.38407 * 119.82924 * 59.99339 * 5 2 1 7 7 C 1.37883 * 120.17868 * 180.02562 * 6 5 2 8 8 C 1.39870 * 119.81839 * 0.02562 * 7 6 5 9 9 C 1.47149 * 120.17022 * 179.97438 * 8 7 6 10 10 C 1.34984 * 119.99969 * 180.02562 * 9 8 7 11 11 C 1.46221 * 120.00190 * 179.97438 * 10 9 8 12 12 O 1.21762 * 119.99792 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00493 * 180.02562 * 11 10 9 14 14 C 1.36709 * 120.00372 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99997 * 359.97438 * 14 13 11 16 16 C 1.39125 * 119.99906 * 180.02562 * 14 13 11 17 17 N 1.31322 * 120.00361 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47239 * 59.99803 * 18 16 14 20 20 H 1.48505 * 109.47077 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47093 * 299.99523 * 18 16 14 22 22 C 1.39871 * 119.65771 * 0.25571 * 8 7 6 23 23 C 1.37879 * 119.82267 * 359.46648 * 22 8 7 24 24 H 1.09000 * 109.46860 * 299.99812 * 1 2 3 25 25 H 1.08997 * 109.47265 * 60.00026 * 1 2 3 26 26 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47198 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47148 * 300.00204 * 3 2 1 29 29 H 1.09000 * 109.46949 * 60.00243 * 3 2 1 30 30 H 1.08998 * 109.47309 * 299.99603 * 4 2 1 31 31 H 1.09005 * 109.47141 * 60.00273 * 4 2 1 32 32 H 1.09007 * 109.46855 * 180.02562 * 4 2 1 33 33 H 1.08006 * 119.91147 * 0.02945 * 6 5 2 34 34 H 1.07993 * 120.08895 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.00097 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.99647 * 359.73092 * 10 9 8 37 37 H 0.96999 * 119.99625 * 0.02562 * 13 11 10 38 38 H 0.96990 * 119.99908 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.09430 * 179.74161 * 22 8 7 40 40 H 1.07995 * 119.91911 * 180.27279 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6958 -2.0356 1.4458 7 6 2.1510 -2.6925 2.5694 8 6 2.9546 -2.0160 3.4929 9 6 3.4443 -2.7094 4.6948 10 6 4.2192 -2.0530 5.5841 11 6 4.7053 -2.7418 6.7788 12 8 4.4115 -3.9076 6.9712 13 7 5.4785 -2.0863 7.6669 14 6 5.9335 -2.7305 8.7836 15 1 5.6729 -3.7646 8.9544 16 6 6.7312 -2.0536 9.7007 17 7 7.0477 -0.7961 9.4934 18 14 7.3522 -2.9337 11.2269 19 1 8.1789 -4.0997 10.8241 20 1 8.1756 -1.9997 12.0363 21 1 6.1963 -3.4013 12.0334 22 6 3.2855 -0.6752 3.2709 23 6 2.8271 -0.0340 2.1396 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7217 -1.2491 33 1 1.0749 -2.5565 0.7319 34 1 1.8879 -3.7266 2.7358 35 1 3.1837 -3.7434 4.8655 36 1 4.4833 -1.0201 5.4111 37 1 5.7123 -1.1574 7.5138 38 1 7.6042 -0.3244 10.1326 39 1 3.9021 -0.1448 3.9815 40 1 3.0853 0.9999 1.9645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060332181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:20 Heat of formation + Delta-G solvation = -19.494729 kcal Electronic energy + Delta-G solvation = -19596.063461 eV Core-core repulsion = 16568.055816 eV Total energy + Delta-G solvation = -3028.007645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86003 -38.18348 -36.66905 -34.15044 -32.77811 -31.32499 -31.10496 -28.76775 -27.55916 -27.46133 -25.45629 -23.55841 -22.26242 -20.95899 -19.32999 -18.57085 -17.77484 -16.90592 -15.95823 -15.11337 -14.87042 -14.59998 -14.46806 -14.18016 -13.87717 -13.71804 -13.39026 -13.34359 -12.90279 -12.78772 -12.28917 -12.28113 -11.99843 -11.90486 -11.68832 -11.52319 -11.20330 -11.14160 -11.09500 -10.68756 -10.50865 -10.47124 -10.31096 -9.82918 -9.53198 -8.85254 -8.45589 -8.09089 -7.77085 -6.57033 -3.87203 0.92482 1.52334 2.46864 3.18960 3.20113 3.24815 3.93866 4.09248 4.41428 4.43611 4.56304 4.79965 4.86360 5.02117 5.06128 5.10887 5.29562 5.33147 5.39067 5.41145 5.49462 5.53914 5.60201 5.63709 5.65049 5.71447 5.80550 5.85280 6.04323 6.08809 6.08947 6.14830 6.32657 6.47582 6.54247 6.66807 7.00210 7.06694 7.12670 7.41706 7.97511 8.52428 9.06861 9.44279 10.02300 10.59667 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.002838 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.040669 B = 9865.422690 C =10327.401218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.081 4.081 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.047 4.047 9 C -0.092 4.092 10 C -0.152 4.152 11 C 0.451 3.549 12 O -0.606 6.606 13 N -0.541 5.541 14 C -0.294 4.294 15 H 0.107 0.893 16 C 0.023 3.977 17 N -0.889 5.889 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.114 4.114 23 C -0.119 4.119 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.394 0.606 38 H 0.276 0.724 39 H 0.126 0.874 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 5.357 -18.818 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.134 4.134 7 C -0.127 4.127 8 C -0.047 4.047 9 C -0.113 4.113 10 C -0.173 4.173 11 C 0.241 3.759 12 O -0.494 6.494 13 N -0.174 5.174 14 C -0.424 4.424 15 H 0.125 0.875 16 C -0.181 4.181 17 N -0.528 5.528 18 Si 0.761 3.239 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.132 4.132 23 C -0.137 4.137 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.144 0.856 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.635 4.751 -18.511 21.402 hybrid contribution 0.553 0.264 0.753 0.971 sum -9.082 5.014 -17.758 20.566 Atomic orbital electron populations 1.21887 0.93852 1.02023 1.01741 1.19482 0.95571 0.95000 0.92851 1.21964 1.01290 0.95047 1.01828 1.21890 1.01322 1.00176 0.96120 1.19816 0.98313 0.94112 0.95896 1.20819 1.00661 0.94267 0.97614 1.21306 0.97595 0.99814 0.93992 1.19155 0.97239 0.93553 0.94731 1.22039 0.97401 0.99861 0.91997 1.23187 0.98923 0.99580 0.95647 1.17799 0.85184 0.87651 0.85281 1.90637 1.63136 1.17155 1.78503 1.41883 1.42367 1.13683 1.19453 1.19796 1.26944 0.98212 0.97426 0.87510 1.25410 0.97028 0.95729 0.99911 1.69566 1.36368 1.09393 1.37472 0.85840 0.78914 0.78833 0.80267 1.19629 1.20768 1.19626 1.21456 0.99954 0.94208 0.97558 1.21067 0.98371 1.00042 0.94237 0.92464 0.92547 0.92454 0.92200 0.92563 0.92197 0.92457 0.92550 0.92461 0.86414 0.85852 0.85248 0.86817 0.77214 0.91370 0.85597 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.12 7.13 37.16 0.26 -0.85 16 4 C -0.14 -1.08 8.28 37.16 0.31 -0.77 16 5 C -0.08 -0.90 4.77 -104.49 -0.50 -1.40 16 6 C -0.12 -1.32 8.68 -39.65 -0.34 -1.67 16 7 C -0.11 -1.44 9.80 -39.10 -0.38 -1.82 16 8 C -0.05 -0.71 5.87 -105.06 -0.62 -1.32 16 9 C -0.09 -1.64 9.46 -37.12 -0.35 -1.99 16 10 C -0.15 -2.99 9.41 -37.53 -0.35 -3.35 16 11 C 0.45 11.31 7.69 -13.06 -0.10 11.21 16 12 O -0.61 -17.29 15.80 5.13 0.08 -17.21 16 13 N -0.54 -14.11 5.27 -12.31 -0.06 -14.17 16 14 C -0.29 -8.23 9.68 -15.05 -0.15 -8.38 16 15 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 16 C 0.02 0.60 5.50 -17.44 -0.10 0.51 16 17 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 18 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C -0.11 -1.57 9.41 -39.10 -0.37 -1.94 16 23 C -0.12 -1.42 8.95 -39.65 -0.36 -1.78 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 27 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 7.50 -51.93 -0.39 0.08 16 30 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.12 1.10 7.07 -52.48 -0.37 0.73 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.13 2.44 7.52 -52.49 -0.39 2.04 16 36 H 0.11 1.92 6.08 -52.48 -0.32 1.60 16 37 H 0.39 9.71 7.87 -40.82 -0.32 9.39 16 38 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.13 1.65 6.17 -52.48 -0.32 1.33 16 40 H 0.12 1.24 5.87 -52.49 -0.31 0.94 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -30.84 333.31 -7.75 -38.59 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.63 Total: 9.87 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.86 Total: -14.70 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.66 Total: -37.26 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.08 Total: -17.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.84 -7.75 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.100 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds