Wall clock time and date at job start Mon Mar 30 2020 01:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47422 * 2 1 4 4 C 1.53004 * 109.46649 * 239.99954 * 2 1 3 5 5 C 1.50696 * 109.47336 * 120.00558 * 2 1 3 6 6 C 1.38407 * 119.82924 * 59.99339 * 5 2 1 7 7 C 1.37883 * 120.17868 * 180.02562 * 6 5 2 8 8 C 1.39870 * 119.81839 * 0.02562 * 7 6 5 9 9 C 1.47149 * 120.17022 * 179.97438 * 8 7 6 10 10 C 1.34984 * 119.99969 * 180.02562 * 9 8 7 11 11 C 1.46221 * 120.00190 * 179.97438 * 10 9 8 12 12 O 1.21762 * 119.99792 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00493 * 180.02562 * 11 10 9 14 14 C 1.36709 * 120.00372 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99997 * 359.97438 * 14 13 11 16 16 C 1.39125 * 119.99906 * 180.02562 * 14 13 11 17 17 N 1.31322 * 120.00361 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99720 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47239 * 59.99803 * 18 16 14 20 20 H 1.48505 * 109.47077 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47093 * 299.99523 * 18 16 14 22 22 C 1.39871 * 119.65771 * 0.25571 * 8 7 6 23 23 C 1.37879 * 119.82267 * 359.46648 * 22 8 7 24 24 H 1.09000 * 109.46860 * 299.99812 * 1 2 3 25 25 H 1.08997 * 109.47265 * 60.00026 * 1 2 3 26 26 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47198 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47148 * 300.00204 * 3 2 1 29 29 H 1.09000 * 109.46949 * 60.00243 * 3 2 1 30 30 H 1.08998 * 109.47309 * 299.99603 * 4 2 1 31 31 H 1.09005 * 109.47141 * 60.00273 * 4 2 1 32 32 H 1.09007 * 109.46855 * 180.02562 * 4 2 1 33 33 H 1.08006 * 119.91147 * 0.02945 * 6 5 2 34 34 H 1.07993 * 120.08895 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.00097 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.99647 * 359.73092 * 10 9 8 37 37 H 0.96999 * 119.99625 * 0.02562 * 13 11 10 38 38 H 0.96990 * 119.99908 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.09430 * 179.74161 * 22 8 7 40 40 H 1.07995 * 119.91911 * 180.27279 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6958 -2.0356 1.4458 7 6 2.1510 -2.6925 2.5694 8 6 2.9546 -2.0160 3.4929 9 6 3.4443 -2.7094 4.6948 10 6 4.2192 -2.0530 5.5841 11 6 4.7053 -2.7418 6.7788 12 8 4.4115 -3.9076 6.9712 13 7 5.4785 -2.0863 7.6669 14 6 5.9335 -2.7305 8.7836 15 1 5.6729 -3.7646 8.9544 16 6 6.7312 -2.0536 9.7007 17 7 7.0477 -0.7961 9.4934 18 14 7.3522 -2.9337 11.2269 19 1 8.1789 -4.0997 10.8241 20 1 8.1756 -1.9997 12.0363 21 1 6.1963 -3.4013 12.0334 22 6 3.2855 -0.6752 3.2709 23 6 2.8271 -0.0340 2.1396 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.1300 -0.7217 -1.2491 33 1 1.0749 -2.5565 0.7319 34 1 1.8879 -3.7266 2.7358 35 1 3.1837 -3.7434 4.8655 36 1 4.4833 -1.0201 5.4111 37 1 5.7123 -1.1574 7.5138 38 1 7.6042 -0.3244 10.1326 39 1 3.9021 -0.1448 3.9815 40 1 3.0853 0.9999 1.9645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060332181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:19 Heat of formation + Delta-G solvation = -36.561713 kcal Electronic energy + Delta-G solvation = -19596.803541 eV Core-core repulsion = 16568.055816 eV Total energy + Delta-G solvation = -3028.747725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83202 -40.09825 -37.61635 -36.13368 -34.16316 -33.34582 -32.08561 -30.01571 -28.20411 -28.05100 -27.30963 -24.90537 -23.28195 -22.36533 -20.58275 -20.08845 -19.53497 -18.32651 -17.20102 -16.77503 -16.09813 -15.89024 -15.63346 -15.39931 -15.17717 -15.10942 -14.64830 -14.52820 -14.15631 -13.79605 -13.60537 -13.23814 -13.03843 -12.96389 -12.90573 -12.60778 -12.50746 -12.50162 -12.13947 -12.10087 -11.86789 -11.61573 -11.51971 -11.30815 -10.99614 -10.51856 -10.13106 -9.84829 -9.02354 -8.56994 -6.00235 -0.32473 0.52721 1.09986 1.39697 1.46204 1.51579 2.26185 2.43172 2.95954 3.18581 3.27176 3.67657 3.78334 3.96931 4.07356 4.10825 4.16271 4.31646 4.43149 4.46852 4.53633 4.63274 4.83137 4.83540 4.94871 4.99483 5.05220 5.07963 5.09185 5.16702 5.25088 5.27739 5.31706 5.40970 5.43538 5.48676 5.61847 5.74150 5.78220 5.95719 6.08853 6.50864 7.02159 7.44706 8.02946 8.59996 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.002838 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.040669 B = 9865.422690 C =10327.401218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.067 4.067 6 C -0.119 4.119 7 C -0.106 4.106 8 C -0.083 4.083 9 C -0.049 4.049 10 C -0.186 4.186 11 C 0.451 3.549 12 O -0.649 6.649 13 N -0.552 5.552 14 C -0.339 4.339 15 H 0.082 0.918 16 C -0.010 4.010 17 N -0.910 5.910 18 Si 0.999 3.001 19 H -0.269 1.269 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.114 4.114 23 C -0.127 4.127 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.398 0.602 38 H 0.283 0.717 39 H 0.129 0.871 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 6.459 -21.080 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 C -0.203 4.203 4 C -0.195 4.195 5 C -0.067 4.067 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.083 4.083 9 C -0.070 4.070 10 C -0.207 4.207 11 C 0.243 3.757 12 O -0.540 6.540 13 N -0.185 5.185 14 C -0.469 4.469 15 H 0.100 0.900 16 C -0.211 4.211 17 N -0.550 5.550 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.132 4.132 23 C -0.144 4.144 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.233 0.767 38 H 0.093 0.907 39 H 0.147 0.853 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.634 5.884 -20.798 24.088 hybrid contribution 0.656 -0.059 1.107 1.288 sum -9.978 5.824 -19.691 22.830 Atomic orbital electron populations 1.21889 0.92936 1.02384 1.02240 1.19581 0.96228 0.95349 0.91877 1.21982 1.01243 0.94503 1.02550 1.21892 1.00896 1.00454 0.96211 1.20263 0.96276 0.94022 0.96156 1.21109 1.00597 0.94555 0.97366 1.21527 0.96579 1.00410 0.93935 1.19063 1.00049 0.94517 0.94676 1.22210 0.93945 0.98985 0.91865 1.22914 1.02103 1.00998 0.94691 1.18629 0.83771 0.87202 0.86097 1.90584 1.64445 1.19224 1.79774 1.41859 1.43207 1.13843 1.19580 1.19740 1.29734 0.97860 0.99527 0.89979 1.26216 0.96301 0.96435 1.02197 1.69621 1.36616 1.10208 1.38513 0.84906 0.78396 0.77948 0.76605 1.19452 1.18987 1.19445 1.21608 0.99651 0.93713 0.98255 1.21338 0.98337 1.01091 0.93677 0.93159 0.90951 0.92195 0.92342 0.91102 0.92339 0.92197 0.90954 0.93156 0.83888 0.84843 0.86625 0.84076 0.76731 0.90738 0.85333 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.29 71.98 0.60 -1.07 16 2 C -0.03 -0.42 0.85 -52.93 -0.05 -0.46 16 3 C -0.15 -1.78 7.13 71.98 0.51 -1.27 16 4 C -0.14 -1.66 8.28 71.98 0.60 -1.07 16 5 C -0.07 -1.28 4.77 -19.78 -0.09 -1.38 16 6 C -0.12 -2.36 8.68 22.23 0.19 -2.17 16 7 C -0.11 -2.61 9.80 22.58 0.22 -2.39 16 8 C -0.08 -2.42 5.87 -20.15 -0.12 -2.54 16 9 C -0.05 -1.77 9.46 23.86 0.23 -1.54 16 10 C -0.19 -7.51 9.41 23.60 0.22 -7.29 16 11 C 0.45 23.69 7.69 86.32 0.66 24.36 16 12 O -0.65 -38.93 15.80 -4.55 -0.07 -39.00 16 13 N -0.55 -30.11 5.27 -311.05 -1.64 -31.75 16 14 C -0.34 -19.87 9.68 84.15 0.81 -19.05 16 15 H 0.08 5.10 7.15 -2.91 -0.02 5.08 16 16 C -0.01 -0.55 5.50 84.98 0.47 -0.08 16 17 N -0.91 -49.39 13.05 21.69 0.28 -49.10 16 18 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C -0.11 -2.98 9.41 22.58 0.21 -2.77 16 23 C -0.13 -2.71 8.95 22.23 0.20 -2.51 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.70 7.37 -2.39 -0.02 0.68 16 27 H 0.06 0.74 7.51 -2.39 -0.02 0.72 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.74 7.50 -2.39 -0.02 0.72 16 30 H 0.06 0.70 7.37 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.14 2.14 7.07 -2.91 -0.02 2.12 16 34 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.12 4.47 7.52 -2.91 -0.02 4.45 16 36 H 0.14 4.81 6.08 -2.91 -0.02 4.79 16 37 H 0.40 20.47 7.87 -92.71 -0.73 19.74 16 38 H 0.28 14.22 8.31 -92.72 -0.77 13.45 16 39 H 0.13 3.22 6.17 -2.91 -0.02 3.20 16 40 H 0.14 2.48 5.87 -2.91 -0.02 2.46 16 Total: -1.00 -68.76 333.31 5.58 -63.18 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.31 Total: 32.95 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.67 Total: -21.23 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.36 Total: -80.85 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.07 Total: -39.00 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -68.76 5.58 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.621 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds