Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 H 1.09002 * 109.47115 * 54.99319 * 3 2 1 5 5 C 1.50698 * 109.46977 * 174.99777 * 3 2 1 6 6 H 1.08001 * 119.99951 * 120.00276 * 5 3 2 7 7 C 1.37881 * 120.00050 * 299.99396 * 5 3 2 8 8 N 1.31510 * 119.99753 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99884 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47149 * 90.00288 * 9 7 5 11 11 H 1.48502 * 109.47002 * 210.00438 * 9 7 5 12 12 H 1.48498 * 109.47184 * 330.00487 * 9 7 5 13 13 N 1.46501 * 109.46777 * 294.99850 * 3 2 1 14 14 C 1.34776 * 120.00110 * 85.00300 * 13 3 2 15 15 O 1.21282 * 119.99827 * 355.66487 * 14 13 3 16 16 C 1.50702 * 119.99729 * 175.66799 * 14 13 3 17 17 C 1.50698 * 115.55210 * 304.89571 * 16 14 13 18 18 C 1.38228 * 120.00163 * 150.22833 * 17 16 14 19 19 C 1.38230 * 120.00436 * 179.78513 * 18 17 16 20 20 C 1.38237 * 119.99642 * 0.44485 * 19 18 17 21 21 C 1.38241 * 119.99932 * 359.80997 * 20 19 18 22 22 C 1.38229 * 120.00015 * 359.97438 * 21 20 19 23 23 C 1.53006 * 117.49530 * 159.22390 * 16 14 13 24 24 C 1.53006 * 117.49822 * 90.56595 * 16 14 13 25 25 H 1.09000 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47444 * 300.00035 * 1 2 3 27 27 H 1.09001 * 109.46736 * 60.00321 * 1 2 3 28 28 H 1.08995 * 109.47319 * 239.99189 * 2 1 3 29 29 H 1.09001 * 109.46736 * 119.99679 * 2 1 3 30 30 H 0.97002 * 119.99766 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99736 * 265.00036 * 13 3 2 32 32 H 1.08002 * 119.99934 * 359.97438 * 18 17 16 33 33 H 1.07992 * 120.00593 * 180.27143 * 19 18 17 34 34 H 1.08001 * 120.00045 * 179.82985 * 20 19 18 35 35 H 1.07998 * 120.00037 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.00038 * 180.02562 * 22 21 20 37 37 H 1.09003 * 117.49794 * 0.02562 * 23 16 14 38 38 H 1.08996 * 117.49717 * 145.01871 * 23 16 14 39 39 H 1.08998 * 117.50088 * 214.97686 * 24 16 14 40 40 H 1.08999 * 117.49667 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8785 1.2281 8 7 3.4061 0.3368 2.1730 9 14 6.0049 0.8813 1.3820 10 1 6.4416 2.1143 2.0850 11 1 6.4395 -0.3097 2.1552 12 1 6.6135 0.8417 0.0281 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3682 2.5644 -0.4640 16 6 0.0723 3.4222 -2.6181 17 6 1.0131 4.5361 -2.9991 18 6 1.1777 4.8774 -4.3285 19 6 2.0372 5.9021 -4.6777 20 6 2.7394 6.5793 -3.6983 21 6 2.5788 6.2344 -2.3692 22 6 1.7159 5.2127 -2.0197 23 6 -1.4150 3.6201 -2.9178 24 6 -0.5897 2.6375 -3.7525 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0616 2.9497 31 1 2.2720 2.1230 -1.9978 32 1 0.6322 4.3456 -5.0940 33 1 2.1625 6.1717 -5.7159 34 1 3.4131 7.3780 -3.9713 35 1 3.1270 6.7638 -1.6040 36 1 1.5901 4.9436 -0.9813 37 1 -2.1309 3.2024 -2.2099 38 1 -1.7129 4.5557 -3.3909 39 1 -0.3451 2.9271 -4.7744 40 1 -0.7624 1.5730 -3.5941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061618025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 6.231248 kcal Electronic energy + Delta-G solvation = -21280.987088 eV Core-core repulsion = 18254.095005 eV Total energy + Delta-G solvation = -3026.892083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19450 -38.46921 -36.35299 -34.81713 -32.34451 -31.11022 -30.65383 -30.35313 -27.09281 -24.57221 -23.00899 -22.74152 -22.06435 -21.49525 -19.64636 -19.03891 -17.61143 -16.65036 -15.77001 -15.39147 -14.98301 -14.66879 -14.56531 -14.28191 -14.01780 -13.47753 -13.21289 -12.78871 -12.66800 -12.41361 -11.88773 -11.61333 -11.50647 -11.28382 -11.14779 -11.02881 -10.96876 -10.84421 -10.57792 -10.38767 -10.29345 -10.11535 -9.58502 -9.04824 -8.95323 -8.82354 -8.48542 -8.46451 -7.78012 -6.11580 -4.20625 1.39368 1.50354 3.21622 3.24663 3.31591 3.33903 3.73313 3.97414 4.21776 4.38436 4.60053 4.89987 5.03007 5.05010 5.13000 5.19587 5.26434 5.39831 5.53042 5.65955 5.73097 5.88661 5.95911 6.09948 6.14318 6.22376 6.41405 6.49095 6.54184 6.62776 6.68662 6.72909 7.06608 7.08129 7.21524 7.39195 7.48153 7.64036 7.75892 7.91576 8.19468 8.70866 8.79271 9.16188 9.46968 10.93752 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.006451 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.625215 B = 4339.620056 C = 5648.982063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.539 3.461 15 O -0.544 6.544 16 C -0.123 4.123 17 C -0.038 4.038 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.099 4.099 23 C -0.136 4.136 24 C -0.158 4.158 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 8.172 -12.979 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.345 5.345 14 C 0.323 3.677 15 O -0.423 6.423 16 C -0.126 4.126 17 C -0.038 4.038 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.174 4.174 24 C -0.195 4.195 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.461 7.985 -12.098 15.167 hybrid contribution 1.438 -0.031 -0.202 1.452 sum -3.024 7.954 -12.300 14.957 Atomic orbital electron populations 1.21863 0.98296 0.97841 1.01373 1.21934 0.92657 0.99834 1.02223 1.18786 0.94162 0.89226 0.80810 0.93508 1.21235 0.90722 1.38889 1.06219 0.92106 1.24872 0.98511 0.94815 0.95414 1.69896 1.35082 1.37670 1.09356 0.86480 0.85002 0.77634 0.78197 1.20583 1.21074 1.19852 1.46425 1.14414 1.55333 1.18344 1.19071 0.82952 0.79292 0.86366 1.90670 1.49727 1.61167 1.40708 1.20372 0.95489 0.99085 0.97688 1.18843 0.96444 0.95223 0.93287 1.20983 0.99484 0.97998 0.95355 1.21035 0.97323 0.96481 0.99140 1.21125 0.99948 1.00187 0.93154 1.21148 0.98276 0.97414 0.96331 1.21115 0.95654 0.95173 0.99737 1.23013 0.91475 1.00821 1.02043 1.23125 1.02779 0.98387 0.95179 0.96048 0.93206 0.94102 0.95086 0.88340 0.92594 0.77860 0.85992 0.86282 0.86348 0.85961 0.85693 0.87339 0.88305 0.87899 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.47 37.16 0.31 -2.76 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.36 7.64 -51.93 -0.40 0.96 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.66 4.94 -54.93 -0.27 -14.93 16 14 C 0.54 10.76 4.72 -10.98 -0.05 10.70 16 15 O -0.54 -12.63 13.28 5.56 0.07 -12.56 16 16 C -0.12 -1.91 2.38 -156.81 -0.37 -2.28 16 17 C -0.04 -0.55 5.45 -104.63 -0.57 -1.12 16 18 C -0.12 -1.47 9.35 -39.59 -0.37 -1.84 16 19 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 20 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 21 C -0.11 -1.53 10.05 -39.58 -0.40 -1.92 16 22 C -0.10 -1.54 9.29 -39.58 -0.37 -1.91 16 23 C -0.14 -1.82 9.72 -26.69 -0.26 -2.08 16 24 C -0.16 -1.97 9.57 -26.69 -0.26 -2.22 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.20 7.80 -51.93 -0.41 0.79 16 27 H 0.04 0.89 5.55 -51.93 -0.29 0.60 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 7.55 8.54 -40.82 -0.35 7.20 16 32 H 0.12 1.23 5.95 -52.49 -0.31 0.91 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.13 2.22 7.33 -52.48 -0.38 1.83 16 37 H 0.11 1.57 7.82 -51.93 -0.41 1.16 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.03 6.11 -51.93 -0.32 0.71 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -29.50 326.66 -9.16 -38.67 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.67 Total: 10.63 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.82 Total: -18.31 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.35 Total: -39.02 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.50 -9.16 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061618025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.897 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds