Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 H 1.09002 * 109.47115 * 54.99319 * 3 2 1 5 5 C 1.50698 * 109.46977 * 174.99777 * 3 2 1 6 6 H 1.08001 * 119.99951 * 120.00276 * 5 3 2 7 7 C 1.37881 * 120.00050 * 299.99396 * 5 3 2 8 8 N 1.31510 * 119.99753 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99884 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47149 * 90.00288 * 9 7 5 11 11 H 1.48502 * 109.47002 * 210.00438 * 9 7 5 12 12 H 1.48498 * 109.47184 * 330.00487 * 9 7 5 13 13 N 1.46501 * 109.46777 * 294.99850 * 3 2 1 14 14 C 1.34776 * 120.00110 * 85.00300 * 13 3 2 15 15 O 1.21282 * 119.99827 * 355.66487 * 14 13 3 16 16 C 1.50702 * 119.99729 * 175.66799 * 14 13 3 17 17 C 1.50698 * 115.55210 * 304.89571 * 16 14 13 18 18 C 1.38228 * 120.00163 * 150.22833 * 17 16 14 19 19 C 1.38230 * 120.00436 * 179.78513 * 18 17 16 20 20 C 1.38237 * 119.99642 * 0.44485 * 19 18 17 21 21 C 1.38241 * 119.99932 * 359.80997 * 20 19 18 22 22 C 1.38229 * 120.00015 * 359.97438 * 21 20 19 23 23 C 1.53006 * 117.49530 * 159.22390 * 16 14 13 24 24 C 1.53006 * 117.49822 * 90.56595 * 16 14 13 25 25 H 1.09000 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47444 * 300.00035 * 1 2 3 27 27 H 1.09001 * 109.46736 * 60.00321 * 1 2 3 28 28 H 1.08995 * 109.47319 * 239.99189 * 2 1 3 29 29 H 1.09001 * 109.46736 * 119.99679 * 2 1 3 30 30 H 0.97002 * 119.99766 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99736 * 265.00036 * 13 3 2 32 32 H 1.08002 * 119.99934 * 359.97438 * 18 17 16 33 33 H 1.07992 * 120.00593 * 180.27143 * 19 18 17 34 34 H 1.08001 * 120.00045 * 179.82985 * 20 19 18 35 35 H 1.07998 * 120.00037 * 180.02562 * 21 20 19 36 36 H 1.08005 * 120.00038 * 180.02562 * 22 21 20 37 37 H 1.09003 * 117.49794 * 0.02562 * 23 16 14 38 38 H 1.08996 * 117.49717 * 145.01871 * 23 16 14 39 39 H 1.08998 * 117.50088 * 214.97686 * 24 16 14 40 40 H 1.08999 * 117.49667 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8785 1.2281 8 7 3.4061 0.3368 2.1730 9 14 6.0049 0.8813 1.3820 10 1 6.4416 2.1143 2.0850 11 1 6.4395 -0.3097 2.1552 12 1 6.6135 0.8417 0.0281 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3682 2.5644 -0.4640 16 6 0.0723 3.4222 -2.6181 17 6 1.0131 4.5361 -2.9991 18 6 1.1777 4.8774 -4.3285 19 6 2.0372 5.9021 -4.6777 20 6 2.7394 6.5793 -3.6983 21 6 2.5788 6.2344 -2.3692 22 6 1.7159 5.2127 -2.0197 23 6 -1.4150 3.6201 -2.9178 24 6 -0.5897 2.6375 -3.7525 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0616 2.9497 31 1 2.2720 2.1230 -1.9978 32 1 0.6322 4.3456 -5.0940 33 1 2.1625 6.1717 -5.7159 34 1 3.4131 7.3780 -3.9713 35 1 3.1270 6.7638 -1.6040 36 1 1.5901 4.9436 -0.9813 37 1 -2.1309 3.2024 -2.2099 38 1 -1.7129 4.5557 -3.3909 39 1 -0.3451 2.9271 -4.7744 40 1 -0.7624 1.5730 -3.5941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061618025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -10.369818 kcal Electronic energy + Delta-G solvation = -21281.706964 eV Core-core repulsion = 18254.095005 eV Total energy + Delta-G solvation = -3027.611959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50581 -39.78368 -37.67941 -36.59805 -34.29614 -32.83953 -31.77920 -31.38088 -29.06913 -25.99887 -24.77526 -23.76034 -23.26405 -22.68540 -21.48058 -20.62366 -18.97236 -18.15161 -17.26511 -17.20387 -16.32500 -16.21370 -15.86867 -15.57074 -15.29034 -14.99656 -14.62177 -14.26235 -13.79433 -13.75982 -13.61165 -13.43108 -13.18719 -12.94123 -12.72264 -12.59368 -12.24636 -12.17745 -12.10471 -11.97336 -11.67238 -11.53656 -11.44431 -11.08570 -10.62233 -10.50286 -9.80987 -9.64878 -9.45909 -8.18458 -6.35761 0.41495 0.52012 1.41851 1.41984 1.52949 1.72636 2.32958 2.55894 2.69654 3.10641 3.11189 3.52144 3.84978 3.87599 4.02843 4.15594 4.21217 4.30384 4.46537 4.55145 4.55827 4.68471 4.72754 4.75291 4.81705 4.95418 5.05054 5.11747 5.15202 5.22377 5.23772 5.42431 5.53739 5.59995 5.60677 5.65273 5.70442 5.77467 5.90951 6.12772 6.15066 6.71825 6.97833 7.30984 7.55484 8.86973 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.006451 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.625215 B = 4339.620056 C = 5648.982063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.262 1.262 13 N -0.696 5.696 14 C 0.537 3.463 15 O -0.586 6.586 16 C -0.143 4.143 17 C -0.047 4.047 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.130 4.130 25 H 0.045 0.955 26 H 0.023 0.977 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.398 0.602 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 8.971 -16.760 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.186 1.186 13 N -0.342 5.342 14 C 0.324 3.676 15 O -0.467 6.467 16 C -0.146 4.146 17 C -0.048 4.048 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.169 4.169 24 C -0.167 4.167 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.621 8.795 -15.914 18.540 hybrid contribution 1.138 -0.219 0.989 1.523 sum -2.483 8.576 -14.926 17.392 Atomic orbital electron populations 1.21693 0.96875 0.98991 1.00353 1.21781 0.93839 0.99093 1.01235 1.18351 0.93575 0.89196 0.81058 0.98831 1.21533 0.91403 1.38923 1.06636 0.91528 1.25743 1.03258 0.94309 0.94967 1.70045 1.37048 1.38315 1.09856 0.85409 0.79210 0.77541 0.78595 1.20403 1.20687 1.18570 1.46179 1.15305 1.55552 1.17211 1.19854 0.81757 0.78395 0.87584 1.90640 1.50782 1.62526 1.42764 1.20199 0.97303 1.00302 0.96828 1.18811 0.96548 0.95051 0.94354 1.21270 0.99524 0.98231 0.94351 1.21498 0.95677 0.95149 1.00787 1.21480 0.99993 1.00597 0.92104 1.21291 0.98113 0.97071 0.97928 1.20966 0.98304 0.97465 0.98240 1.23102 0.89622 1.02332 1.01881 1.23306 0.99755 0.97852 0.95798 0.93620 0.95746 0.93582 0.94134 0.90983 0.92548 0.76765 0.83067 0.82582 0.83500 0.85611 0.89812 0.89196 0.85719 0.84122 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.47 71.98 0.61 -5.06 16 2 C -0.12 -6.11 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.90 2.24 44.24 0.10 14.99 16 4 H -0.01 -0.39 7.64 -2.39 -0.02 -0.41 16 5 C -0.55 -29.74 8.73 25.60 0.22 -29.52 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -53.10 11.29 21.45 0.24 -52.86 16 9 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.70 -30.35 4.94 -446.09 -2.21 -32.55 16 14 C 0.54 22.32 4.72 87.66 0.41 22.74 16 15 O -0.59 -28.93 13.28 -3.03 -0.04 -28.97 16 16 C -0.14 -4.35 2.38 -53.67 -0.13 -4.48 16 17 C -0.05 -1.33 5.45 -19.87 -0.11 -1.44 16 18 C -0.12 -2.37 9.35 22.27 0.21 -2.16 16 19 C -0.11 -2.01 10.05 22.27 0.22 -1.79 16 20 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 21 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 22 C -0.13 -4.24 9.29 22.27 0.21 -4.03 16 23 C -0.13 -3.33 9.72 30.62 0.30 -3.03 16 24 C -0.13 -2.87 9.57 30.62 0.29 -2.58 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.02 1.21 7.80 -2.39 -0.02 1.20 16 27 H 0.05 2.06 5.55 -2.39 -0.01 2.05 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 30 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.40 15.74 8.54 -92.71 -0.79 14.95 16 32 H 0.15 2.14 5.95 -2.91 -0.02 2.13 16 33 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.08 3.30 7.33 -2.91 -0.02 3.28 16 37 H 0.09 2.61 7.82 -2.39 -0.02 2.59 16 38 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.14 2.04 6.11 -2.39 -0.01 2.03 16 40 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.47 326.66 3.68 -64.79 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.25 Total: 31.02 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 3.40 Total: -26.28 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.96 Total: -85.42 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.04 Total: -28.97 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -68.47 3.68 -64.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061618025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.420 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds