Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46810 * 2 1 4 4 H 1.08997 * 109.47668 * 306.00444 * 3 2 1 5 5 C 1.50699 * 109.47352 * 186.00669 * 3 2 1 6 6 H 1.07999 * 120.00631 * 245.64214 * 5 3 2 7 7 C 1.37883 * 119.99776 * 65.63192 * 5 3 2 8 8 N 1.31515 * 119.99850 * 196.01325 * 7 5 3 9 9 Si 1.86796 * 120.00082 * 16.01421 * 7 5 3 10 10 H 1.48494 * 109.47361 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47279 * 299.99932 * 9 7 5 12 12 H 1.48511 * 109.46716 * 59.99715 * 9 7 5 13 13 N 1.46503 * 109.47501 * 66.00782 * 3 2 1 14 14 C 1.34773 * 120.00033 * 274.99859 * 13 3 2 15 15 O 1.21289 * 119.99878 * 4.12251 * 14 13 3 16 16 C 1.50700 * 120.00284 * 184.11676 * 14 13 3 17 17 C 1.50696 * 115.55125 * 303.46642 * 16 14 13 18 18 C 1.38235 * 120.00212 * 147.97152 * 17 16 14 19 19 C 1.38240 * 120.00234 * 179.79145 * 18 17 16 20 20 C 1.38237 * 119.99484 * 0.43620 * 19 18 17 21 21 C 1.38228 * 120.00440 * 359.81707 * 20 19 18 22 22 C 1.38237 * 120.00038 * 359.97438 * 21 20 19 23 23 C 1.52999 * 117.50082 * 157.79171 * 16 14 13 24 24 C 1.52994 * 117.49540 * 89.13359 * 16 14 13 25 25 H 1.09000 * 109.47247 * 60.00063 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47178 * 299.99588 * 1 2 3 28 28 H 1.09001 * 109.46890 * 239.99880 * 2 1 3 29 29 H 1.09000 * 109.47247 * 119.99937 * 2 1 3 30 30 H 0.97004 * 120.00241 * 354.94968 * 8 7 5 31 31 H 0.97002 * 120.00171 * 94.99329 * 13 3 2 32 32 H 1.08002 * 119.99785 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.99985 * 180.27883 * 19 18 17 34 34 H 1.08003 * 119.99631 * 179.83644 * 20 19 18 35 35 H 1.07996 * 120.00148 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00152 * 179.97438 * 22 21 20 37 37 H 1.09004 * 117.49466 * 0.02562 * 23 16 14 38 38 H 1.09002 * 117.50000 * 145.01932 * 23 16 14 39 39 H 1.09002 * 117.50122 * 214.98027 * 24 16 14 40 40 H 1.09003 * 117.50636 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9864 -0.8313 5 6 3.5396 1.4452 -0.1487 6 1 4.1617 1.8019 0.6588 7 6 4.1175 0.9920 -1.3157 8 7 5.3984 0.6953 -1.3430 9 14 3.0810 0.7994 -2.8577 10 1 3.9325 0.3009 -3.9674 11 1 1.9855 -0.1696 -2.6000 12 1 2.5009 2.1144 -3.2316 13 7 1.6732 2.0901 1.2619 14 6 0.4581 2.6563 1.4005 15 8 -0.3589 2.5648 0.5087 16 6 0.1142 3.4029 2.6636 17 6 0.2534 2.6167 3.9417 18 6 0.6191 3.2571 5.1108 19 6 0.7425 2.5366 6.2842 20 6 0.5090 1.1741 6.2863 21 6 0.1484 0.5328 5.1162 22 6 0.0207 1.2540 3.9437 23 6 -1.0112 4.4366 2.5891 24 6 0.4436 4.8961 2.7134 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.9522 0.8642 -0.5647 31 1 2.3050 2.1114 1.9977 32 1 0.8055 4.3209 5.1082 33 1 1.0239 3.0378 7.1985 34 1 0.6080 0.6108 7.2025 35 1 -0.0337 -0.5317 5.1178 36 1 -0.2606 0.7528 3.0294 37 1 -1.5032 4.5764 1.6265 38 1 -1.6508 4.5483 3.4646 39 1 0.7605 5.3100 3.6707 40 1 0.9094 5.3385 1.8328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061618026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = 6.458588 kcal Electronic energy + Delta-G solvation = -21387.233649 eV Core-core repulsion = 18360.351424 eV Total energy + Delta-G solvation = -3026.882225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32998 -38.61453 -36.52430 -35.00077 -32.41530 -31.41674 -30.93536 -30.51389 -27.33512 -24.61602 -22.87250 -22.51890 -22.08670 -21.67178 -19.84175 -19.28161 -17.91717 -17.19610 -16.23921 -15.53274 -15.17376 -14.75784 -14.67163 -14.35465 -13.83532 -13.44243 -13.28179 -12.91692 -12.76045 -12.45253 -12.43001 -12.21144 -11.71607 -11.67165 -11.26811 -11.11886 -10.92025 -10.68492 -10.61906 -10.47049 -10.38663 -9.88522 -9.55307 -9.18254 -9.01977 -8.93498 -8.58323 -8.34412 -8.04727 -6.57664 -4.21544 1.28849 1.38865 3.07774 3.38134 3.43757 3.57881 3.61914 3.82850 4.14163 4.41525 4.50826 4.80309 4.94058 4.95263 5.04142 5.12986 5.17166 5.25577 5.41656 5.56119 5.64829 5.77344 5.89119 6.00263 6.00812 6.10132 6.12178 6.15312 6.29184 6.44561 6.50226 6.59511 6.71069 6.80853 6.95670 6.97287 7.08218 7.37756 7.42887 7.66474 8.23958 8.50327 8.71088 8.99491 9.47663 10.82952 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.005699 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.854234 B = 4912.094595 C = 5191.603412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.040 0.960 5 C -0.615 4.615 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.899 5.899 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.281 1.281 13 N -0.691 5.691 14 C 0.540 3.460 15 O -0.546 6.546 16 C -0.124 4.124 17 C -0.038 4.038 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.156 4.156 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.269 0.731 31 H 0.394 0.606 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 4.222 13.609 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.653 4.653 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.532 5.532 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.338 5.338 14 C 0.324 3.676 15 O -0.425 6.425 16 C -0.128 4.128 17 C -0.038 4.038 18 C -0.137 4.137 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.173 4.173 24 C -0.193 4.193 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.969 3.622 11.353 16.196 hybrid contribution 0.436 0.461 2.073 2.167 sum -10.533 4.082 13.426 17.546 Atomic orbital electron populations 1.21937 0.97326 0.98727 1.02156 1.22363 0.93833 0.99775 1.01812 1.19064 0.95882 0.88648 0.81955 0.94268 1.22099 0.89733 1.49541 1.03942 0.92077 1.25670 0.97641 0.92395 1.01039 1.70875 1.06699 1.41083 1.34550 0.84122 0.75497 0.77706 0.75908 1.20928 1.19463 1.20672 1.46182 1.14257 1.55429 1.17913 1.19144 0.82779 0.79234 0.86394 1.90660 1.48776 1.60805 1.42245 1.20312 1.07852 0.91432 0.93183 1.18851 0.99269 0.93382 0.92308 1.21024 1.00344 1.00123 0.92159 1.21073 1.00513 0.94372 0.97790 1.21134 1.00298 0.94791 0.98102 1.21131 0.99593 0.99912 0.92601 1.21099 0.99146 0.93460 0.98588 1.23025 0.91081 0.98993 1.04157 1.23144 0.99030 0.93138 1.03970 0.93060 0.95214 0.93009 0.91332 0.93110 0.92129 0.77329 0.85836 0.86125 0.86232 0.85988 0.85902 0.87306 0.88217 0.87783 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.49 37.16 0.32 -2.64 16 2 C -0.14 -3.13 5.27 -26.73 -0.14 -3.28 16 3 C 0.25 5.94 1.81 -69.09 -0.13 5.82 16 4 H 0.04 1.02 6.32 -51.93 -0.33 0.70 16 5 C -0.62 -16.70 9.01 -34.44 -0.31 -17.01 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -26.85 13.70 55.43 0.76 -26.09 16 9 Si 1.04 25.19 26.26 -169.99 -4.46 20.73 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.08 5.66 56.52 0.32 -5.76 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -14.23 5.01 -54.94 -0.28 -14.51 16 14 C 0.54 10.39 4.81 -10.99 -0.05 10.34 16 15 O -0.55 -12.00 13.33 5.55 0.07 -11.92 16 16 C -0.12 -1.87 2.37 -156.82 -0.37 -2.24 16 17 C -0.04 -0.53 5.38 -104.62 -0.56 -1.09 16 18 C -0.12 -1.40 9.38 -39.58 -0.37 -1.77 16 19 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 20 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 21 C -0.11 -1.41 10.05 -39.59 -0.40 -1.81 16 22 C -0.10 -1.51 9.32 -39.58 -0.37 -1.88 16 23 C -0.14 -1.74 9.73 -26.70 -0.26 -2.00 16 24 C -0.16 -1.94 9.58 -26.70 -0.26 -2.20 16 25 H 0.05 1.09 7.86 -51.93 -0.41 0.68 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.05 4.60 -51.93 -0.24 0.81 16 28 H 0.07 1.61 4.72 -51.93 -0.25 1.37 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 31 H 0.39 7.70 8.46 -40.82 -0.35 7.35 16 32 H 0.12 1.22 5.93 -52.49 -0.31 0.90 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.95 6.47 -52.49 -0.34 1.61 16 37 H 0.11 1.51 7.85 -51.93 -0.41 1.10 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.04 6.08 -51.93 -0.32 0.72 16 40 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -30.59 320.50 -8.42 -39.01 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.55 Total: 10.15 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.79 Total: -22.19 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.48 Total: -40.60 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.46 Total: 20.73 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.59 -8.42 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061618026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.472 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds