Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46810 * 2 1 4 4 H 1.08997 * 109.47668 * 306.00444 * 3 2 1 5 5 C 1.50699 * 109.47352 * 186.00669 * 3 2 1 6 6 H 1.07999 * 120.00631 * 245.64214 * 5 3 2 7 7 C 1.37883 * 119.99776 * 65.63192 * 5 3 2 8 8 N 1.31515 * 119.99850 * 196.01325 * 7 5 3 9 9 Si 1.86796 * 120.00082 * 16.01421 * 7 5 3 10 10 H 1.48494 * 109.47361 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47279 * 299.99932 * 9 7 5 12 12 H 1.48511 * 109.46716 * 59.99715 * 9 7 5 13 13 N 1.46503 * 109.47501 * 66.00782 * 3 2 1 14 14 C 1.34773 * 120.00033 * 274.99859 * 13 3 2 15 15 O 1.21289 * 119.99878 * 4.12251 * 14 13 3 16 16 C 1.50700 * 120.00284 * 184.11676 * 14 13 3 17 17 C 1.50696 * 115.55125 * 303.46642 * 16 14 13 18 18 C 1.38235 * 120.00212 * 147.97152 * 17 16 14 19 19 C 1.38240 * 120.00234 * 179.79145 * 18 17 16 20 20 C 1.38237 * 119.99484 * 0.43620 * 19 18 17 21 21 C 1.38228 * 120.00440 * 359.81707 * 20 19 18 22 22 C 1.38237 * 120.00038 * 359.97438 * 21 20 19 23 23 C 1.52999 * 117.50082 * 157.79171 * 16 14 13 24 24 C 1.52994 * 117.49540 * 89.13359 * 16 14 13 25 25 H 1.09000 * 109.47247 * 60.00063 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47178 * 299.99588 * 1 2 3 28 28 H 1.09001 * 109.46890 * 239.99880 * 2 1 3 29 29 H 1.09000 * 109.47247 * 119.99937 * 2 1 3 30 30 H 0.97004 * 120.00241 * 354.94968 * 8 7 5 31 31 H 0.97002 * 120.00171 * 94.99329 * 13 3 2 32 32 H 1.08002 * 119.99785 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.99985 * 180.27883 * 19 18 17 34 34 H 1.08003 * 119.99631 * 179.83644 * 20 19 18 35 35 H 1.07996 * 120.00148 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00152 * 179.97438 * 22 21 20 37 37 H 1.09004 * 117.49466 * 0.02562 * 23 16 14 38 38 H 1.09002 * 117.50000 * 145.01932 * 23 16 14 39 39 H 1.09002 * 117.50122 * 214.98027 * 24 16 14 40 40 H 1.09003 * 117.50636 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9864 -0.8313 5 6 3.5396 1.4452 -0.1487 6 1 4.1617 1.8019 0.6588 7 6 4.1175 0.9920 -1.3157 8 7 5.3984 0.6953 -1.3430 9 14 3.0810 0.7994 -2.8577 10 1 3.9325 0.3009 -3.9674 11 1 1.9855 -0.1696 -2.6000 12 1 2.5009 2.1144 -3.2316 13 7 1.6732 2.0901 1.2619 14 6 0.4581 2.6563 1.4005 15 8 -0.3589 2.5648 0.5087 16 6 0.1142 3.4029 2.6636 17 6 0.2534 2.6167 3.9417 18 6 0.6191 3.2571 5.1108 19 6 0.7425 2.5366 6.2842 20 6 0.5090 1.1741 6.2863 21 6 0.1484 0.5328 5.1162 22 6 0.0207 1.2540 3.9437 23 6 -1.0112 4.4366 2.5891 24 6 0.4436 4.8961 2.7134 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.9522 0.8642 -0.5647 31 1 2.3050 2.1114 1.9977 32 1 0.8055 4.3209 5.1082 33 1 1.0239 3.0378 7.1985 34 1 0.6080 0.6108 7.2025 35 1 -0.0337 -0.5317 5.1178 36 1 -0.2606 0.7528 3.0294 37 1 -1.5032 4.5764 1.6265 38 1 -1.6508 4.5483 3.4646 39 1 0.7605 5.3100 3.6707 40 1 0.9094 5.3385 1.8328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061618026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = -11.819847 kcal Electronic energy + Delta-G solvation = -21388.026261 eV Core-core repulsion = 18360.351424 eV Total energy + Delta-G solvation = -3027.674837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59186 -39.84689 -37.80965 -36.68552 -34.47609 -33.13624 -31.88227 -31.43881 -29.24324 -25.90955 -24.27260 -23.82676 -23.35653 -22.75394 -21.57441 -20.85694 -19.62451 -18.53988 -17.49592 -17.24723 -16.38564 -16.01118 -15.84689 -15.51895 -15.32151 -15.06337 -14.53228 -14.49720 -14.25982 -14.05086 -13.80651 -13.59599 -13.56604 -12.72334 -12.65671 -12.51052 -12.33620 -12.23545 -12.03287 -11.80770 -11.66595 -11.50780 -11.38225 -11.13060 -10.67369 -10.51735 -9.86315 -9.80976 -9.51280 -8.82411 -6.47228 0.37553 0.48383 1.42482 1.47006 1.63178 1.66736 2.34996 2.39299 2.65076 2.98200 3.06682 3.47542 3.76090 3.81709 3.96381 4.10049 4.14905 4.25356 4.29717 4.38133 4.48696 4.53178 4.64286 4.70522 4.74658 4.84181 4.92378 5.04497 5.08489 5.11109 5.17506 5.18054 5.30121 5.50807 5.56437 5.61140 5.62654 5.65027 5.68546 5.97747 6.09021 6.49670 6.81601 7.25408 7.40180 8.56941 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.005699 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.854234 B = 4912.094595 C = 5191.603412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.253 3.747 4 H 0.021 0.979 5 C -0.612 4.612 6 H 0.037 0.963 7 C -0.004 4.004 8 N -0.927 5.927 9 Si 1.071 2.929 10 H -0.281 1.281 11 H -0.245 1.245 12 H -0.274 1.274 13 N -0.694 5.694 14 C 0.541 3.459 15 O -0.577 6.577 16 C -0.142 4.142 17 C -0.050 4.050 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.140 4.140 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.257 0.743 31 H 0.398 0.602 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 4.904 15.747 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.650 4.650 6 H 0.055 0.945 7 C -0.204 4.204 8 N -0.562 5.562 9 Si 0.893 3.107 10 H -0.207 1.207 11 H -0.169 1.169 12 H -0.199 1.199 13 N -0.341 5.341 14 C 0.328 3.672 15 O -0.458 6.458 16 C -0.145 4.145 17 C -0.050 4.050 18 C -0.137 4.137 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.164 4.164 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.232 0.768 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.272 4.313 13.527 18.767 hybrid contribution 0.851 0.284 1.511 1.757 sum -11.421 4.597 15.037 19.434 Atomic orbital electron populations 1.21811 0.95513 1.00202 1.01563 1.22243 0.95358 0.98377 1.01359 1.18762 0.93551 0.89731 0.83094 0.96117 1.22263 0.91448 1.48288 1.03008 0.94490 1.26810 0.97835 0.92034 1.03763 1.70978 1.07630 1.43382 1.34223 0.83734 0.75119 0.78673 0.73189 1.20651 1.16916 1.19949 1.46028 1.15246 1.55943 1.16854 1.19808 0.81520 0.78365 0.87546 1.90631 1.49401 1.61808 1.43957 1.20183 1.10349 0.92348 0.91592 1.18820 1.00607 0.93096 0.92497 1.21277 0.99576 1.01321 0.91571 1.21490 0.98968 0.94322 0.98563 1.21499 0.98988 0.95358 0.98413 1.21328 0.99690 1.00570 0.92598 1.21040 1.01245 0.94179 0.98488 1.23108 0.91420 0.97295 1.04536 1.23290 0.98490 0.90646 1.05213 0.94105 0.92642 0.93170 0.92221 0.93055 0.93336 0.76844 0.83606 0.82952 0.83528 0.85003 0.88540 0.88812 0.85628 0.84471 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.49 71.98 0.61 -4.79 16 2 C -0.13 -6.06 5.27 30.59 0.16 -5.90 16 3 C 0.25 12.31 1.81 44.24 0.08 12.39 16 4 H 0.02 1.10 6.32 -2.39 -0.02 1.09 16 5 C -0.61 -34.03 9.01 25.60 0.23 -33.80 16 6 H 0.04 2.19 7.96 -2.91 -0.02 2.16 16 7 C 0.00 -0.21 5.32 84.66 0.45 0.24 16 8 N -0.93 -56.63 13.70 21.45 0.29 -56.34 16 9 Si 1.07 50.95 26.26 68.60 1.80 52.75 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.24 -10.63 5.66 99.48 0.56 -10.07 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.69 -29.04 5.01 -446.11 -2.23 -31.27 16 14 C 0.54 20.96 4.81 87.66 0.42 21.38 16 15 O -0.58 -25.72 13.33 -3.06 -0.04 -25.76 16 16 C -0.14 -4.11 2.37 -53.68 -0.13 -4.24 16 17 C -0.05 -1.31 5.38 -19.87 -0.11 -1.42 16 18 C -0.12 -2.42 9.38 22.27 0.21 -2.21 16 19 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 20 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 21 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 22 C -0.13 -3.73 9.32 22.27 0.21 -3.52 16 23 C -0.13 -3.03 9.73 30.62 0.30 -2.73 16 24 C -0.14 -3.17 9.58 30.61 0.29 -2.88 16 25 H 0.04 1.71 7.86 -2.39 -0.02 1.69 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 2.04 4.60 -2.39 -0.01 2.03 16 28 H 0.06 2.77 4.72 -2.39 -0.01 2.76 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.26 15.78 8.73 -92.71 -0.81 14.97 16 31 H 0.40 15.87 8.46 -92.71 -0.78 15.09 16 32 H 0.15 2.20 5.93 -2.91 -0.02 2.18 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.10 3.17 6.47 -2.91 -0.02 3.15 16 37 H 0.09 2.54 7.85 -2.39 -0.02 2.52 16 38 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.14 2.18 6.08 -2.39 -0.01 2.17 16 40 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -67.71 320.50 3.31 -64.40 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.09 Total: 30.26 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 3.40 Total: -34.03 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.94 Total: -87.61 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.76 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.80 Total: 52.75 kcal Total: -67.71 3.31 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061618026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.582 kcal (2) G-P(sol) polarization free energy of solvation -67.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds