Wall clock time and date at job start Mon Mar 30 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47601 * 2 1 4 4 N 1.46496 * 109.47354 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00444 * 89.99843 * 4 3 2 6 6 H 1.08004 * 120.00106 * 221.47793 * 5 4 3 7 7 C 1.38948 * 119.99952 * 41.48064 * 5 4 3 8 8 N 1.31408 * 119.99956 * 7.92700 * 7 5 4 9 9 Si 1.86805 * 120.00083 * 187.93120 * 7 5 4 10 10 H 1.48495 * 109.46934 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46982 * 119.99689 * 9 7 5 12 12 H 1.48496 * 109.47126 * 239.99840 * 9 7 5 13 13 C 1.34787 * 119.99701 * 269.99526 * 4 3 2 14 14 O 1.21294 * 119.99610 * 4.31384 * 13 4 3 15 15 C 1.50698 * 120.00000 * 184.30851 * 13 4 3 16 16 H 1.08999 * 115.54814 * 331.81398 * 15 13 4 17 17 C 1.53001 * 117.49644 * 117.47937 * 15 13 4 18 18 C 1.52997 * 117.49661 * 186.14139 * 15 13 4 19 19 H 1.08991 * 117.50158 * 0.02562 * 18 15 13 20 20 C 1.50709 * 117.49548 * 145.02603 * 18 15 13 21 21 C 1.38231 * 119.99971 * 59.72413 * 20 18 15 22 22 C 1.38238 * 119.99345 * 179.78591 * 21 20 18 23 23 C 1.38236 * 120.00225 * 0.44627 * 22 21 20 24 24 C 1.38235 * 119.99950 * 359.80262 * 23 22 21 25 25 C 1.38232 * 119.99541 * 239.99389 * 20 18 15 26 26 H 1.08994 * 109.47406 * 300.00532 * 1 2 3 27 27 H 1.09004 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46561 * 60.00120 * 1 2 3 29 29 H 1.09003 * 109.46804 * 120.00353 * 2 1 3 30 30 H 1.09004 * 109.46906 * 239.99550 * 2 1 3 31 31 H 1.09003 * 109.47331 * 300.00031 * 3 2 1 32 32 H 1.09004 * 109.47209 * 59.99293 * 3 2 1 33 33 H 0.97004 * 119.99845 * 174.99417 * 8 7 5 34 34 H 1.09002 * 117.49649 * 214.97951 * 17 15 13 35 35 H 1.09000 * 117.50079 * 0.02562 * 17 15 13 36 36 H 1.07998 * 120.00648 * 359.97438 * 21 20 18 37 37 H 1.08003 * 119.99953 * 180.27426 * 22 21 20 38 38 H 1.08005 * 120.00027 * 179.83534 * 23 22 21 39 39 H 1.07998 * 120.00036 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.00296 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1901 1.4424 -1.1881 6 1 5.0669 0.8229 -1.3058 7 6 3.7564 2.2396 -2.2403 8 7 2.7879 3.1074 -2.0513 9 14 4.5500 2.0777 -3.9236 10 1 5.6079 1.0368 -3.8740 11 1 3.5206 1.6893 -4.9209 12 1 5.1520 3.3778 -4.3142 13 6 4.1794 1.4422 1.1664 14 8 3.5758 1.3632 2.2155 15 6 5.6832 1.5402 1.1677 16 1 6.1811 1.1402 0.2844 17 6 6.3108 2.7632 1.8395 18 6 6.3997 1.3906 2.5112 19 1 5.7835 1.2208 3.3941 20 6 7.7402 0.7019 2.5120 21 6 8.7834 1.2192 1.7670 22 6 10.0142 0.5899 1.7713 23 6 10.1992 -0.5617 2.5133 24 6 9.1544 -1.0818 3.2542 25 6 7.9249 -0.4501 3.2533 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.5342 3.7141 -2.7644 34 1 7.2219 3.1675 1.3984 35 1 5.6361 3.4967 2.2808 36 1 8.6377 2.1166 1.1841 37 1 10.8306 0.9965 1.1928 38 1 11.1601 -1.0548 2.5145 39 1 9.2988 -1.9818 3.8335 40 1 7.1087 -0.8565 3.8323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066321365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:26 Heat of formation + Delta-G solvation = 6.464635 kcal Electronic energy + Delta-G solvation = -20706.972060 eV Core-core repulsion = 17680.090098 eV Total energy + Delta-G solvation = -3026.881962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61884 -38.48391 -36.11387 -34.72957 -32.74194 -31.22105 -30.80156 -30.26134 -26.17295 -24.88073 -23.57011 -22.79238 -22.10088 -20.50134 -19.94745 -18.98670 -17.13175 -16.79572 -15.95088 -14.97671 -14.83594 -14.56642 -14.33032 -14.11088 -13.75877 -13.42927 -13.28155 -13.14075 -12.69589 -12.38724 -11.90393 -11.63763 -11.40646 -11.34444 -11.27113 -11.08443 -10.93960 -10.76140 -10.65565 -10.27688 -10.26663 -10.16281 -9.77719 -9.67743 -9.10672 -8.78773 -8.52424 -8.23648 -7.43128 -6.31602 -4.14273 1.47971 1.54081 3.08856 3.19545 3.22493 3.62289 3.92664 4.09372 4.60417 4.64232 4.97827 5.04291 5.07851 5.13118 5.27303 5.47214 5.56630 5.62530 5.74302 5.80235 5.84751 5.89936 6.08386 6.11536 6.16649 6.23480 6.34267 6.48459 6.55717 6.58469 6.63146 6.66486 6.74355 6.75691 6.88688 6.92140 7.14919 7.18597 7.35754 7.62288 8.00926 8.40219 9.07799 9.52201 9.95025 10.67039 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.005449 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.815192 B = 5136.939354 C = 6140.354864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.434 5.434 5 C -0.330 4.330 6 H 0.087 0.913 7 C 0.044 3.956 8 N -0.870 5.870 9 Si 0.917 3.083 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.499 3.501 14 O -0.606 6.606 15 C -0.131 4.131 16 H 0.119 0.881 17 C -0.145 4.145 18 C -0.110 4.110 19 H 0.120 0.880 20 C -0.036 4.036 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.269 0.731 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -3.958 4.040 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.016 4.016 4 N -0.151 5.151 5 C -0.458 4.458 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.508 5.508 9 Si 0.743 3.257 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.288 3.712 14 O -0.492 6.492 15 C -0.152 4.152 16 H 0.137 0.863 17 C -0.182 4.182 18 C -0.129 4.129 19 H 0.138 0.862 20 C -0.036 4.036 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.307 -3.895 4.371 10.163 hybrid contribution 0.400 -0.040 -1.067 1.140 sum 8.707 -3.935 3.304 10.110 Atomic orbital electron populations 1.21651 0.96696 1.00305 1.01351 1.21819 0.94596 0.99660 1.01073 1.21647 0.81363 0.94560 1.03986 1.43352 1.04774 1.62729 1.04243 1.19465 1.12020 1.25125 0.89216 0.89542 1.25463 0.96105 0.94484 1.00037 1.69661 1.28035 1.19153 1.33930 0.86018 0.79184 0.78367 0.82085 1.19221 1.20555 1.20575 1.19562 0.87612 0.80085 0.83982 1.90509 1.70095 1.56530 1.32088 1.22186 0.94375 1.03103 0.95556 0.86276 1.22938 1.02065 0.90578 1.02656 1.21124 0.94339 0.99351 0.98062 0.86203 1.19291 0.93753 0.94685 0.95892 1.21140 0.92791 1.00499 0.99480 1.21095 0.97174 0.96012 0.99411 1.21070 0.98854 0.96914 0.98380 1.21085 0.93276 0.99833 0.99632 1.21015 0.97293 0.95251 0.99707 0.93242 0.93761 0.92951 0.93247 0.92414 0.86446 0.93278 0.91987 0.88447 0.88401 0.85712 0.86329 0.86549 0.86359 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.13 -2.82 6.26 -26.74 -0.17 -2.99 16 3 C 0.11 2.63 4.96 -4.05 -0.02 2.61 16 4 N -0.43 -11.07 2.52 -114.81 -0.29 -11.36 16 5 C -0.33 -8.34 8.49 -14.93 -0.13 -8.46 16 6 H 0.09 2.11 6.76 -52.48 -0.35 1.76 16 7 C 0.04 1.09 5.23 -17.47 -0.09 1.00 16 8 N -0.87 -22.73 10.95 55.50 0.61 -22.12 16 9 Si 0.92 19.32 29.56 -169.99 -5.03 14.30 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.50 12.37 7.40 -10.98 -0.08 12.29 16 14 O -0.61 -16.17 15.90 5.55 0.09 -16.08 16 15 C -0.13 -2.71 5.07 -91.77 -0.47 -3.17 16 16 H 0.12 2.44 6.67 -51.93 -0.35 2.10 16 17 C -0.14 -2.56 9.57 -26.69 -0.26 -2.82 16 18 C -0.11 -1.95 5.56 -91.73 -0.51 -2.46 16 19 H 0.12 2.25 7.68 -51.93 -0.40 1.85 16 20 C -0.04 -0.56 5.61 -104.62 -0.59 -1.15 16 21 C -0.12 -1.72 9.29 -39.58 -0.37 -2.09 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 23 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 25 C -0.11 -1.64 9.74 -39.59 -0.39 -2.02 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.12 3.03 5.27 -51.93 -0.27 2.76 16 32 H 0.05 1.24 7.49 -51.93 -0.39 0.85 16 33 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 34 H 0.10 1.47 6.18 -51.93 -0.32 1.15 16 35 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 36 H 0.13 1.66 6.03 -52.49 -0.32 1.35 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -28.77 332.96 -9.25 -38.01 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.76 Total: 9.35 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -3.88 Total: -17.12 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.32 Total: -33.48 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.77 -9.25 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066321365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.478 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds