Wall clock time and date at job start Mon Mar 30 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47601 * 2 1 4 4 N 1.46496 * 109.47354 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00444 * 89.99843 * 4 3 2 6 6 H 1.08004 * 120.00106 * 221.47793 * 5 4 3 7 7 C 1.38948 * 119.99952 * 41.48064 * 5 4 3 8 8 N 1.31408 * 119.99956 * 7.92700 * 7 5 4 9 9 Si 1.86805 * 120.00083 * 187.93120 * 7 5 4 10 10 H 1.48495 * 109.46934 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46982 * 119.99689 * 9 7 5 12 12 H 1.48496 * 109.47126 * 239.99840 * 9 7 5 13 13 C 1.34787 * 119.99701 * 269.99526 * 4 3 2 14 14 O 1.21294 * 119.99610 * 4.31384 * 13 4 3 15 15 C 1.50698 * 120.00000 * 184.30851 * 13 4 3 16 16 H 1.08999 * 115.54814 * 331.81398 * 15 13 4 17 17 C 1.53001 * 117.49644 * 117.47937 * 15 13 4 18 18 C 1.52997 * 117.49661 * 186.14139 * 15 13 4 19 19 H 1.08991 * 117.50158 * 0.02562 * 18 15 13 20 20 C 1.50709 * 117.49548 * 145.02603 * 18 15 13 21 21 C 1.38231 * 119.99971 * 59.72413 * 20 18 15 22 22 C 1.38238 * 119.99345 * 179.78591 * 21 20 18 23 23 C 1.38236 * 120.00225 * 0.44627 * 22 21 20 24 24 C 1.38235 * 119.99950 * 359.80262 * 23 22 21 25 25 C 1.38232 * 119.99541 * 239.99389 * 20 18 15 26 26 H 1.08994 * 109.47406 * 300.00532 * 1 2 3 27 27 H 1.09004 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46561 * 60.00120 * 1 2 3 29 29 H 1.09003 * 109.46804 * 120.00353 * 2 1 3 30 30 H 1.09004 * 109.46906 * 239.99550 * 2 1 3 31 31 H 1.09003 * 109.47331 * 300.00031 * 3 2 1 32 32 H 1.09004 * 109.47209 * 59.99293 * 3 2 1 33 33 H 0.97004 * 119.99845 * 174.99417 * 8 7 5 34 34 H 1.09002 * 117.49649 * 214.97951 * 17 15 13 35 35 H 1.09000 * 117.50079 * 0.02562 * 17 15 13 36 36 H 1.07998 * 120.00648 * 359.97438 * 21 20 18 37 37 H 1.08003 * 119.99953 * 180.27426 * 22 21 20 38 38 H 1.08005 * 120.00027 * 179.83534 * 23 22 21 39 39 H 1.07998 * 120.00036 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.00296 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1901 1.4424 -1.1881 6 1 5.0669 0.8229 -1.3058 7 6 3.7564 2.2396 -2.2403 8 7 2.7879 3.1074 -2.0513 9 14 4.5500 2.0777 -3.9236 10 1 5.6079 1.0368 -3.8740 11 1 3.5206 1.6893 -4.9209 12 1 5.1520 3.3778 -4.3142 13 6 4.1794 1.4422 1.1664 14 8 3.5758 1.3632 2.2155 15 6 5.6832 1.5402 1.1677 16 1 6.1811 1.1402 0.2844 17 6 6.3108 2.7632 1.8395 18 6 6.3997 1.3906 2.5112 19 1 5.7835 1.2208 3.3941 20 6 7.7402 0.7019 2.5120 21 6 8.7834 1.2192 1.7670 22 6 10.0142 0.5899 1.7713 23 6 10.1992 -0.5617 2.5133 24 6 9.1544 -1.0818 3.2542 25 6 7.9249 -0.4501 3.2533 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.5342 3.7141 -2.7644 34 1 7.2219 3.1675 1.3984 35 1 5.6361 3.4967 2.2808 36 1 8.6377 2.1166 1.1841 37 1 10.8306 0.9965 1.1928 38 1 11.1601 -1.0548 2.5145 39 1 9.2988 -1.9818 3.8335 40 1 7.1087 -0.8565 3.8323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066321365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:26 Heat of formation + Delta-G solvation = -6.571156 kcal Electronic energy + Delta-G solvation = -20707.537334 eV Core-core repulsion = 17680.090098 eV Total energy + Delta-G solvation = -3027.447237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08817 -39.97608 -37.67687 -36.57051 -34.50696 -33.13026 -31.80783 -31.37234 -27.93640 -26.78343 -24.78422 -24.33499 -23.21887 -22.20303 -21.28957 -20.82805 -18.75677 -18.29725 -17.53827 -16.60422 -16.38379 -15.97820 -15.74172 -15.63775 -15.45740 -14.92892 -14.82158 -14.21634 -14.05029 -13.77241 -13.52814 -13.25387 -13.16070 -12.99665 -12.78431 -12.63403 -12.42541 -12.14821 -12.01949 -11.97511 -11.85054 -11.57539 -11.46644 -11.26093 -11.01362 -10.42345 -9.77984 -9.47270 -9.37119 -8.23836 -6.13679 0.42669 0.54300 1.41224 1.47599 1.59677 1.87487 2.29625 2.71559 2.95132 3.04435 3.27379 3.74715 3.95509 3.98682 4.11090 4.16971 4.19713 4.29819 4.32213 4.36470 4.45893 4.56407 4.64797 4.73137 4.77764 4.85086 4.97095 5.08010 5.08714 5.11851 5.20463 5.21000 5.22807 5.36956 5.42916 5.63304 5.64335 5.65664 5.79008 6.07058 6.16256 6.44360 7.12108 7.56938 8.00554 8.75936 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.005449 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.815192 B = 5136.939354 C = 6140.354864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.107 3.893 4 N -0.447 5.447 5 C -0.345 4.345 6 H 0.092 0.908 7 C 0.004 3.996 8 N -0.901 5.901 9 Si 0.987 3.013 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.484 3.516 14 O -0.637 6.637 15 C -0.153 4.153 16 H 0.119 0.881 17 C -0.132 4.132 18 C -0.089 4.089 19 H 0.101 0.899 20 C -0.061 4.061 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.131 4.131 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.027 0.973 33 H 0.273 0.727 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.189 -4.900 3.074 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.016 4.016 4 N -0.163 5.163 5 C -0.473 4.473 6 H 0.109 0.891 7 C -0.198 4.198 8 N -0.539 5.539 9 Si 0.810 3.190 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.274 3.726 14 O -0.526 6.526 15 C -0.174 4.174 16 H 0.137 0.863 17 C -0.169 4.169 18 C -0.108 4.108 19 H 0.119 0.881 20 C -0.061 4.061 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.149 4.149 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.704 -4.843 3.408 12.233 hybrid contribution -0.320 0.241 -0.705 0.811 sum 10.384 -4.601 2.703 11.675 Atomic orbital electron populations 1.21600 0.93562 1.02301 1.01738 1.21709 0.97322 0.97096 1.00066 1.21618 0.81541 0.96312 1.02148 1.43628 1.05201 1.62681 1.04811 1.19726 1.12428 1.25738 0.89382 0.89063 1.26290 0.96389 0.93748 1.03375 1.69781 1.29110 1.19811 1.35165 0.84967 0.78373 0.78530 0.77144 1.18188 1.20392 1.20174 1.20287 0.89537 0.79383 0.83379 1.90464 1.71259 1.57945 1.32958 1.22030 0.91648 1.06298 0.97434 0.86284 1.23045 1.02349 0.90006 1.01535 1.21005 0.94985 0.99271 0.95506 0.88096 1.19209 0.92936 0.95821 0.98147 1.21277 0.93241 1.00972 0.99368 1.21451 0.97040 0.95999 0.99342 1.21513 0.99914 0.96359 0.96821 1.21410 0.92447 1.00419 0.99635 1.21165 0.98484 0.95303 0.99963 0.92964 0.90931 0.92467 0.94642 0.92809 0.87669 0.95408 0.91727 0.85424 0.89628 0.85267 0.83615 0.83301 0.83794 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.91 71.98 0.71 -3.90 16 2 C -0.12 -5.36 6.26 30.59 0.19 -5.17 16 3 C 0.11 5.46 4.96 86.38 0.43 5.88 16 4 N -0.45 -23.63 2.52 -635.54 -1.60 -25.23 16 5 C -0.35 -17.70 8.49 84.04 0.71 -16.99 16 6 H 0.09 4.49 6.76 -2.91 -0.02 4.47 16 7 C 0.00 0.19 5.23 84.93 0.44 0.64 16 8 N -0.90 -47.71 10.95 21.66 0.24 -47.47 16 9 Si 0.99 39.13 29.56 68.60 2.03 41.16 16 10 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 11 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 13 C 0.48 25.08 7.40 87.65 0.65 25.72 16 14 O -0.64 -35.86 15.90 -3.07 -0.05 -35.91 16 15 C -0.15 -6.50 5.07 -11.54 -0.06 -6.55 16 16 H 0.12 4.98 6.67 -2.39 -0.02 4.96 16 17 C -0.13 -4.72 9.57 30.62 0.29 -4.42 16 18 C -0.09 -3.23 5.56 -11.51 -0.06 -3.29 16 19 H 0.10 4.00 7.68 -2.39 -0.02 3.99 16 20 C -0.06 -1.88 5.61 -19.86 -0.11 -1.99 16 21 C -0.13 -3.47 9.29 22.27 0.21 -3.26 16 22 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 23 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 24 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 25 C -0.13 -3.65 9.74 22.27 0.22 -3.43 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.11 5.63 5.27 -2.39 -0.01 5.62 16 32 H 0.03 1.48 7.49 -2.39 -0.02 1.46 16 33 H 0.27 13.54 8.32 -92.71 -0.77 12.77 16 34 H 0.13 3.72 6.18 -2.39 -0.01 3.70 16 35 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.13 3.20 6.03 -2.91 -0.02 3.18 16 37 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -63.84 332.96 5.93 -57.91 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 1.02 Total: 33.45 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 4.29 Total: -23.90 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -1.36 Total: -72.71 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.05 Total: -35.91 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -63.84 5.93 -57.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066321365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.334 kcal (2) G-P(sol) polarization free energy of solvation -63.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds