Wall clock time and date at job start Mon Mar 30 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47484 * 2 1 4 4 C 1.50709 * 109.47239 * 119.99880 * 2 1 3 5 5 C 1.38232 * 119.99864 * 119.99517 * 4 2 1 6 6 C 1.38232 * 119.99543 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00584 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00301 * 179.97438 * 7 6 5 9 9 H 1.08997 * 115.55200 * 25.67059 * 8 7 6 10 10 C 1.53079 * 117.51344 * 171.39439 * 8 7 6 11 11 C 1.52995 * 59.98361 * 107.47301 * 10 8 7 12 12 H 1.09004 * 117.49801 * 252.49210 * 11 10 8 13 13 C 1.50706 * 117.49405 * 107.50487 * 11 10 8 14 14 O 1.21292 * 119.99870 * 291.24589 * 13 11 10 15 15 N 1.34777 * 120.00150 * 111.25301 * 13 11 10 16 16 C 1.37095 * 119.99970 * 179.97438 * 15 13 11 17 17 H 1.08004 * 120.00455 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00240 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00367 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99822 * 0.26929 * 18 16 15 21 21 H 1.48500 * 109.47088 * 269.73243 * 20 18 16 22 22 H 1.48505 * 109.47152 * 29.72720 * 20 18 16 23 23 H 1.48494 * 109.47142 * 149.72720 * 20 18 16 24 24 C 1.38246 * 119.99610 * 0.25105 * 7 6 5 25 25 C 1.38230 * 119.99726 * 359.49509 * 24 7 6 26 26 H 1.09004 * 109.46993 * 59.99810 * 1 2 3 27 27 H 1.08997 * 109.47570 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47145 * 300.00590 * 1 2 3 29 29 H 1.08998 * 109.47775 * 240.00104 * 2 1 3 30 30 H 1.08997 * 109.47633 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46910 * 299.99990 * 3 2 1 32 32 H 1.09005 * 109.46745 * 59.99654 * 3 2 1 33 33 H 1.07998 * 120.00250 * 0.02562 * 5 4 2 34 34 H 1.08004 * 119.99896 * 179.97438 * 6 5 4 35 35 H 1.09001 * 117.49087 * 359.97438 * 10 8 7 36 36 H 1.09003 * 117.51048 * 214.95780 * 10 8 7 37 37 H 0.96999 * 120.00043 * 359.97438 * 15 13 11 38 38 H 0.97005 * 120.00032 * 179.97438 * 19 18 16 39 39 H 1.07991 * 119.99798 * 179.72900 * 24 7 6 40 40 H 1.07997 * 119.99936 * 180.23051 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2873 -2.4862 2.2324 7 6 2.9526 -2.0145 3.4879 8 6 3.4540 -2.7256 4.7184 9 1 4.3763 -3.2922 4.5909 10 6 3.2220 -2.0473 6.0709 11 6 2.4092 -3.2850 5.6860 12 1 1.3591 -3.1388 5.4326 13 6 2.7341 -4.5773 6.3899 14 8 3.7907 -5.1341 6.1784 15 7 1.8505 -5.1145 7.2544 16 6 2.1459 -6.2904 7.8943 17 1 3.0864 -6.7866 7.7055 18 6 1.2348 -6.8445 8.7851 19 7 1.5177 -7.9719 9.3982 20 14 -0.3958 -5.9910 9.1051 21 1 -0.2456 -5.0465 10.2411 22 1 -0.8096 -5.2429 7.8908 23 1 -1.4284 -7.0051 9.4375 24 6 2.1532 -0.8938 3.6147 25 6 1.6972 -0.2389 2.4861 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.0881 -2.2032 0.1228 34 1 3.9078 -3.3646 2.1334 35 1 2.7070 -1.0866 6.0703 36 1 3.9918 -2.1677 6.8332 37 1 1.0056 -4.6691 7.4237 38 1 0.8818 -8.3585 10.0204 39 1 1.8881 -0.5279 4.5956 40 1 1.0757 0.6388 2.5851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076984942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:23 Heat of formation + Delta-G solvation = -3.809101 kcal Electronic energy + Delta-G solvation = -19893.076702 eV Core-core repulsion = 16865.749237 eV Total energy + Delta-G solvation = -3027.327465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00481 -38.69058 -36.62705 -34.79235 -33.86832 -31.65207 -30.91655 -29.66646 -27.39554 -25.77903 -23.97698 -23.14191 -22.44095 -20.85999 -19.82188 -19.23249 -18.15900 -17.06033 -15.92736 -15.50034 -14.98711 -14.95415 -14.39877 -14.13651 -13.84359 -13.73975 -13.57233 -13.31864 -12.93018 -12.71216 -12.66220 -12.35851 -12.25183 -11.77383 -11.53023 -11.46692 -11.37249 -11.22497 -10.86625 -10.69493 -10.59381 -10.33825 -10.10437 -9.98518 -9.57565 -8.90778 -8.62120 -8.29019 -8.19738 -6.33000 -3.83940 1.30362 1.42289 3.02665 3.07158 3.15030 3.41842 3.74975 4.09435 4.37443 4.41421 4.50275 4.60041 4.93466 4.95568 4.98812 5.01901 5.11615 5.22337 5.23930 5.33975 5.35602 5.40184 5.50342 5.56441 5.61169 5.66741 5.72386 5.81777 5.95703 5.97978 6.01473 6.07055 6.08256 6.30532 6.32092 6.51029 6.59918 6.75958 7.01735 7.55888 8.13282 8.58004 8.92718 9.41518 9.82164 10.79895 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029030 B = 0.003426 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.298617 B = 8169.882697 C = 8578.191051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.045 4.045 8 C -0.093 4.093 9 H 0.125 0.875 10 C -0.153 4.153 11 C -0.158 4.158 12 H 0.111 0.889 13 C 0.477 3.523 14 O -0.578 6.578 15 N -0.582 5.582 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.879 3.121 21 H -0.270 1.270 22 H -0.268 1.268 23 H -0.276 1.276 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.372 0.628 38 H 0.274 0.726 39 H 0.123 0.877 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 19.005 -16.008 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.088 4.088 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.045 4.045 8 C -0.111 4.111 9 H 0.143 0.857 10 C -0.191 4.191 11 C -0.180 4.180 12 H 0.129 0.871 13 C 0.263 3.737 14 O -0.462 6.462 15 N -0.219 5.219 16 C -0.435 4.435 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.519 5.519 20 Si 0.706 3.294 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.201 1.201 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.205 0.795 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.338 18.427 -15.979 24.502 hybrid contribution -1.439 0.402 0.445 1.559 sum -3.777 18.829 -15.534 24.700 Atomic orbital electron populations 1.21859 0.94447 1.02091 1.01756 1.20102 0.95871 0.95938 0.95491 1.21854 1.01238 0.95225 1.01757 1.19803 0.98365 0.96110 0.94533 1.21004 0.98369 0.95624 0.98389 1.21018 1.00174 0.99732 0.91651 1.19232 0.96886 0.94862 0.93509 1.21040 1.00567 1.01710 0.87795 0.85697 1.23082 1.02811 0.95230 0.97944 1.22319 0.97546 0.94858 1.03236 0.87094 1.18852 0.85558 0.86120 0.83159 1.90547 1.25388 1.63609 1.66624 1.42145 1.17381 1.22949 1.39443 1.19462 1.06156 0.97661 1.20216 0.86247 1.25047 0.98323 0.96102 0.96617 1.69625 1.36499 1.17997 1.27799 0.86668 0.83818 0.79922 0.79038 1.19518 1.19392 1.20101 1.21063 0.98204 0.95776 0.98703 1.20873 1.00425 0.99952 0.91869 0.92559 0.92470 0.92469 0.90652 0.92546 0.92571 0.92480 0.86291 0.85779 0.88272 0.87890 0.79477 0.91552 0.85911 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.01 37.15 0.33 -0.76 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 4 C -0.09 -0.92 4.78 -104.62 -0.50 -1.42 16 5 C -0.12 -1.31 9.67 -39.59 -0.38 -1.69 16 6 C -0.11 -1.40 9.74 -39.58 -0.39 -1.78 16 7 C -0.04 -0.62 5.61 -104.62 -0.59 -1.20 16 8 C -0.09 -1.46 5.56 -91.73 -0.51 -1.97 16 9 H 0.13 2.17 7.67 -51.93 -0.40 1.77 16 10 C -0.15 -2.23 9.57 -26.69 -0.26 -2.49 16 11 C -0.16 -2.77 5.82 -91.77 -0.53 -3.31 16 12 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 13 C 0.48 11.20 7.57 -10.98 -0.08 11.12 16 14 O -0.58 -15.85 15.83 5.55 0.09 -15.76 16 15 N -0.58 -14.28 5.09 -10.96 -0.06 -14.33 16 16 C -0.31 -8.79 10.16 -14.94 -0.15 -8.95 16 17 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 18 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 19 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 20 Si 0.88 19.58 27.74 -169.99 -4.71 14.87 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.50 6.52 56.52 0.37 -5.14 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.12 -1.44 9.29 -39.58 -0.37 -1.81 16 25 C -0.11 -1.22 8.71 -39.58 -0.34 -1.56 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 29 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 33 H 0.12 1.11 7.95 -52.49 -0.42 0.69 16 34 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 35 H 0.10 1.15 6.19 -51.93 -0.32 0.83 16 36 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.37 8.07 5.76 -40.82 -0.24 7.83 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.12 1.31 6.03 -52.49 -0.32 0.99 16 40 H 0.12 1.04 7.10 -52.49 -0.37 0.67 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -32.22 332.39 -8.46 -40.68 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.75 Total: 10.77 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.81 Total: -16.18 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.72 Total: -39.39 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.22 -8.46 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.875 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds